BAC Information

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BAC

Clone NameB6Ng01-123J15
Chromosome7 (Build37)
Map Location 100,768,509 - 100,827,950
singlet/doubletdoublet
Overlap genenone
Upstream geneAnkrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123J15.bB6Ng01-123J15.g
ACCDH926722DH926723
length1,1981,089
definitionDH926722|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J15, 5' end.DH926723|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,768,509 - 100,769,712)(100,826,866 - 100,827,950)
sequence
gaattcaatgaatgttttctgtgtctctaaaatgtgccaatatctgcaca
agtttctgaaactgaaggtgcaatagccatagctcctgaatcagaaaaac
ttgtaagttttgtggaatagaagatgtcttaaaagtgaaaaacataacat
ttcatatactatttttataccagaatgcatttttgtctatattttcagga
atagccatcaaaataacaaaagtaattacatgaacttctcttttaaacac
tacaccaactggcttacttatttctgctcagatccacatcatatggcaga
atttgccatccaaatagtataaactatgcagtttgctatatacagtacct
ccttcttcctacagctcctgtccactcactagtattgtttaattgcccag
tcttcagttggatctcatcttctccatatagccatgctgatcatgtcttt
ggctccttgaacttcagcagtcatgcattcctttgcttttccacagtgcg
atattagcttctgctatagaaccggaacgtcttaagttatatgactcttc
aattcaggcatgctaagatccctgagaataaagtcaaggtttgagttctc
actatattcagtgttttgagaagggttttgtatggcattttgatgaataa
ttggaagggaaaaaatttgactgatttgccagattacctctttgctccta
ttttctgacataactgaaagtcacacaaataataagcactttccatctct
acctttctagtgataggttattttcattattctccttctgttgctttgtc
tctgataaggtaatactaaccagtttattaaaattactggcatctggtac
ttttcactttctcatatacctgtgaattgaacttagaataattaaatgta
tacctttatctattacttggatttaatggtcttcaacaactttaaataga
gaggcaaagaaaccactgcagctgataatatgattcttattttgttttaa
taaaataagcagcctagtaaatgagatcatttagccctatgaagtaattt
gggtttagattcatatgggaaatcaattgacaaagagtagccaaagcaac
atttttttttctggattgaaattgtcttccgaggttaagaatcagaagaa
caggagcctaattgtgcactctttgatcaaatctgaacttaatgggaa
gaattccattttcaatctcaggaactgtcaaattcattgaggttaaaaat
cttaatactgtagtcagaaagttttgagttaaaattctgcacatttgctt
ttgtcctcattaatgccttcctggtctatagcctaaataagaaggtaaat
aaagtcataaggtttgagaaactgggctgagacaaagatggtggtatggg
aaggaagacaagggcttatagaaagacatcaatttcactcaataggatat
tcttccaatgaaagatactacttgagaactatgtcttactgatagaaaat
gaagacaattatatattcactgcagttgacatcagaaactacagcatgta
agtataaaaagaagaatcagcttttgcatttcaaatcctattttgctgat
ctgtttaaaaatattttgttaatatcatagtgagtcttattttgtgccca
caactgatgctcaccagattggggattgaagtctggaactcaatgagagt
ggagcattctggagactgtattccaactagaaatgtgctttcatccctgg
cagcataaatgcaattgagccactcactcaatctgccacaaccaaaggca
gaacctcagttgactagacacaagaatggaccatgtaccattgactgacc
tacactttccctcaacctctctgtcacccacaagcgtttatctgtgaatc
gttgttgctgtggttcacctagcattatgttttggacaatatctgagttt
actaagtaaaaaatgtttgtcttggtctattcacaatacgtagagcaaaa
ccaatctgattattaaatatatattatctgaatataagctccagaatacc
ttttgactttagacattgtattatcttcctcctctaaaagtagaaggact
tctaattgagtatgagtggggatatatagcttagtgattatttaaaagca
atattcacacttggtcattttaaacaagatgaaaaggagatagctgacgg
cacctggcaggtactcagctcccagacggctggcttaattaggttataac
acattccgtgtcaattataggaggttgacaggtaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_100768509_100769712
seq2: B6Ng01-123J15.b_46_1243

seq1  GAATTCAATGAATGTTTTCTGTGTCTCTAAAATGTGCCAATATCTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAATGTTTTCTGTGTCTCTAAAATGTGCCAATATCTGCACA  50

seq1  AGTTTCTGAAACTGAAGGTGCAATAGCCATAGCTCCTGAATCAGAAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGAAACTGAAGGTGCAATAGCCATAGCTCCTGAATCAGAAAAAC  100

seq1  TTGTAAGTTTTGTGGAATAGAAGATGTCTTAAAAGTGAAAAACATAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTTTTGTGGAATAGAAGATGTCTTAAAAGTGAAAAACATAACAT  150

seq1  TTCATATACTATTTTTATACCAGAATGCATTTTTGTCTATATTTTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATACTATTTTTATACCAGAATGCATTTTTGTCTATATTTTCAGGA  200

seq1  ATAGCCATCAAAATAACAAAAGTAATTACATGAACTTCTCTTTTAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATCAAAATAACAAAAGTAATTACATGAACTTCTCTTTTAAACAC  250

seq1  TACACCAACTGGCTTACTTATTTCTGCTCAGATCCACATCATATGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAACTGGCTTACTTATTTCTGCTCAGATCCACATCATATGGCAGA  300

seq1  ATTTGCCATCCAAATAGTATAAACTATGCAGTTTGCTATATACAGTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCATCCAAATAGTATAAACTATGCAGTTTGCTATATACAGTACCT  350

seq1  CCTTCTTCCTACAGCTCCTGTCCACTCACTAGTATTGTTTAATTGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCCTACAGCTCCTGTCCACTCACTAGTATTGTTTAATTGCCCAG  400

seq1  TCTTCAGTTGGATCTCATCTTCTCCATATAGCCATGCTGATCATGTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTTGGATCTCATCTTCTCCATATAGCCATGCTGATCATGTCTTT  450

seq1  GGCTCCTTGAACTTCAGCAGTCATGCATTCCTTTGCTTTTCCACAGTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTGAACTTCAGCAGTCATGCATTCCTTTGCTTTTCCACAGTGCG  500

seq1  ATATTAGCTTCTGCTATAGAACCGGAACGTCTTAAGTTATATGACTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCTTCTGCTATAGAACCGGAACGTCTTAAGTTATATGACTCTTC  550

seq1  AATTCAGGCATGCTAAGATCCCTGAGAATAAAGTCAAGGTTTGAGTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGCATGCTAAGATCCCTGAGAATAAAGTCAAGGTTTGAGTTCTC  600

seq1  ACTATATTCAGTGTTTTGAGAAGGGTTTTGTATGGCATTTTGATGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTCAGTGTTTTGAGAAGGGTTTTGTATGGCATTTTGATGAATAA  650

seq1  TTGGAAGGGAAAAAATTTGACTGATTTGCCAGATTACCTCTTTGCTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGGAAAAAATTTGACTGATTTGCCAGATTACCTCTTTGCTCCTA  700

seq1  TTTTCTGACATAACTGAAAGTCACACAAATAATAAGCACTTTCCATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGACATAACTGAAAGTCACACAAATAATAAGCACTTTCCATCTCT  750

seq1  ACCTTTCTAGTGATAGGTTATTTTCATTATTCTCCTTCTGTTGCTTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTAGTGATAGGTTATTTTCATTATTCTCCTTCTGTTGCTTTGTC  800

seq1  TCTGATAAGGTAATACTAACCAGTTTATTAAAATTACTGGCATCTGGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAGGTAATACTAACCAGTTTATTAAAATTACTGGCATCTGGTAC  850

seq1  TTTTCAC-TTCTCATATACCTGTGAATTGAACTTAGAATAATTAAATGTA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTCTCATATACCTGTGAATTGAACTTAGAATAATTAAATGTA  900

seq1  TACCTTTATCTATTACTTGGATTTAATGGTCTTCAACAACTTTAAAATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TACCTTTATCTATTACTTGGATTTAATGGTCTTCAACAACTTTAAA--TA  948

seq1  GAGAGGCAAAGAAACCACTGCAGCTGATATATATGATTCTTATTTTGTTT  999
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GAGAGGCAAAGAAACCACTGCAGCTGATA-ATATGATTCTTATTTTG-TT  996

seq1  TTAATAAAATAAGGCAGCCTAGTAAATGAGATCATTTTAGGCCCTAATGA  1049
      |||||||||||| ||||||||||||||||||||||||   ||||| ||||
seq2  TTAATAAAATAA-GCAGCCTAGTAAATGAGATCATTT--AGCCCT-ATGA  1042

seq1  AGTAATTTGGGGTTTAAGATTCATATGGGAAATCAATTGACAAAGAGTAG  1099
      |||||||||||  || ||||||||||||||||||||||||||||||||||
seq2  AGTAATTTGGG--TTTAGATTCATATGGGAAATCAATTGACAAAGAGTAG  1090

seq1  CCAAAGCAACATTTTTTTTTCT-GATGGAAATTGTCTTCAGA-GTTAAAG  1147
      |||||||||||||||||||||| ||| |||||||||||| || |||||  
seq2  CCAAAGCAACATTTTTTTTTCTGGATTGAAATTGTCTTCCGAGGTTAAGA  1140

seq1  ATCAGAAG-ACAGAAGCATAATTGTGCATCTTTTGATCAATACTGTACTT  1196
      |||||||| |||| ||| ||||||||||   |||||||||  ||| ||||
seq2  ATCAGAAGAACAGGAGCCTAATTGTGCACTCTTTGATCAAATCTGAACTT  1190

seq1  AATAGGAA  1204
      ||| ||||
seq2  AATGGGAA  1198

seq1: chr7_100826866_100827950
seq2: B6Ng01-123J15.g_68_1156 (reverse)

seq1  TTTATTACATATTCAACTTCTATAATTGA-ACAGAATGTG-TATAACCTA  48
      |||||||| | |  | || |||||||||| || ||||||| |||||||||
seq2  TTTATTACCTGTCAACCTCCTATAATTGACACGGAATGTGTTATAACCTA  50

seq1  ATATAG-CAGCTGTCTGGGAGCTGAGGTACTTGCAAGGTGCTGTCAGCTA  97
      ||  || |||| ||||||||||||| |||| ||| |||||| ||||||||
seq2  ATTAAGCCAGCCGTCTGGGAGCTGA-GTACCTGCCAGGTGCCGTCAGCTA  99

seq1  TCT-CTTTTCATC-TGTATAAAATGAACAAGTGTGAATATTTGCTTTTTA  145
      ||| ||||||||| ||| |||||||| |||||||||||| |||| |||||
seq2  TCTCCTTTTCATCTTGTTTAAAATGACCAAGTGTGAATA-TTGC-TTTTA  147

seq1  AATAATCACTAAGCTATATAT-CACACTCATACTCAATTAGAAGTCTTCT  194
      ||||||||||||||||||||| | |||||||||||||||||||||| |  
seq2  AATAATCACTAAGCTATATATCCCCACTCATACTCAATTAGAAGTCCTTC  197

seq1  TACTTCTTAGAGAAGGAAGATAATACAATGTCTAAAGTCAAAAGGTA-TC  243
      ||||| |||||| |||||||||||||||||||||||||||||||||| ||
seq2  TACTT-TTAGAGGAGGAAGATAATACAATGTCTAAAGTCAAAAGGTATTC  246

seq1  TGGAGC-TATATTCAGATAATATATATTTAATAATCAGATTGGTTATGCT  292
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGAGCTTATATTCAGATAATATATATTTAATAATCAGATTGGTTTTGCT  296

seq1  CTACGTATTGTGAATAGACCAAGACAAACATTTTTTACTTAGTAAACTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTATTGTGAATAGACCAAGACAAACATTTTTTACTTAGTAAACTCA  346

seq1  GATATTGTCCAAAACATAATGCTAGGTGAACCACAGCAACAACGATTCAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTCCAAAACATAATGCTAGGTGAACCACAGCAACAACGATTCAC  396

seq1  AGATAAACGCTTGTGGGTGACAGAGAGGTTGAGGGAAAGTGTAGGTCAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACGCTTGTGGGTGACAGAGAGGTTGAGGGAAAGTGTAGGTCAGT  446

seq1  CAATGGTACATGGTCCATTCTTGTGTCTAGTCAACTGAGGTTCTGCCTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTACATGGTCCATTCTTGTGTCTAGTCAACTGAGGTTCTGCCTTT  496

seq1  GGTTGTGGCAGATTGAGTGAGTGGCTCAATTGCATTTATGCTGCCAGGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGCAGATTGAGTGAGTGGCTCAATTGCATTTATGCTGCCAGGGA  546

seq1  TGAAAGCACATTTCTAGTTGGAATACAGTCTCCAGAATGCTCCACTCTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACATTTCTAGTTGGAATACAGTCTCCAGAATGCTCCACTCTCA  596

seq1  TTGAGTTCCAGACTTCAATCCCCAATCTGGTGAGCATCAGTTGTGGGCAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCCAGACTTCAATCCCCAATCTGGTGAGCATCAGTTGTGGGCAC  646

seq1  AAAATAAGACTCACTATGATATTAACAAAATATTTTTAAACAGATCAGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGACTCACTATGATATTAACAAAATATTTTTAAACAGATCAGCA  696

seq1  AAATAGGATTTGAAATGCAAAAGCTGATTCTTCTTTTTATACTTACATGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGATTTGAAATGCAAAAGCTGATTCTTCTTTTTATACTTACATGC  746

seq1  TGTAGTTTCTGATGTCAACTGCAGTGAATATATAATTGTCTTCATTTTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTCTGATGTCAACTGCAGTGAATATATAATTGTCTTCATTTTCT  796

seq1  ATCAGTAAGACATAGTTCTCAAGTAGTATCTTTCATTGGAAGAATATCCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAGACATAGTTCTCAAGTAGTATCTTTCATTGGAAGAATATCCT  846

seq1  ATTGAGTGAAATTGATGTCTTTCTATAAGCCCTTGTCTTCCTTCCCATAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGAAATTGATGTCTTTCTATAAGCCCTTGTCTTCCTTCCCATAC  896

seq1  CACCATCTTTGTCTCAGCCCAGTTTCTCAAACCTTATGACTTTATTTACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTTTGTCTCAGCCCAGTTTCTCAAACCTTATGACTTTATTTACC  946

seq1  TTCTTATTTAGGCTATAGACCAGGAAGGCATTAATGAGGACAAAAGCAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTAGGCTATAGACCAGGAAGGCATTAATGAGGACAAAAGCAAA  996

seq1  TGTGCAGAATTTTAACTCAAAACTTTCTGACTACAGTATTAAGATTTTTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAATTTTAACTCAAAACTTTCTGACTACAGTATTAAGATTTTTA  1046

seq1  ACCTCAATGAATTTGACAGTTCCTGAGATTGAAAATGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAATGAATTTGACAGTTCCTGAGATTGAAAATGGAATTC  1089