BAC Information

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BAC

Clone NameB6Ng01-123K20
Chromosome7 (Build37)
Map Location 88,586,316 - 88,586,936
singlet/doubletsinglet
Overlap geneCpeb1
Upstream geneBlm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17
Downstream geneLOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K20.b
ACCDH926780
length645
definitionDH926780|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgagacgagagctgtttggtcgatactgtgatgacaattgt
tgaccattctttttttttacttttgaaattttgagctgtgggaaatttct
atttttcggttaaaatgacttgctgtaattacctaaaatagtcagtatta
ctaattttagatgtaccaaaataaaattttattccttatattttttcgga
cactacttttttcttttttttaattagatattttctttatttaaatttca
aatattattccttttcctagtttcccctccccacttcccctgctccccaa
cccacccgctctttcttcctggccctggcattcccctatgatggggcata
gaaccttcacaggaccaagggcatctcctctcgttgatgactgactaagt
catcctctcctacatattcagctagagccatgagtcccaccatgtgtttt
cgttggctggtggtttagtcccacggagctctccgggctacttgatagtg
catgtggttgttccgccgatggggctgcaaaccccttcagctccttggtt
actttctctagctccttcattggggatcctgtgctcattccaatggatgg
ctgtgagcatccacttctgtatttggcaggcacgggcataacctc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88586316_88586936
seq2: B6Ng01-123K20.b_48_667 (reverse)

seq1  ACAGAAGTGGATGCTCACAGCCATCCATTGGACTGAGCACAGGATCCCCA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAGAAGTGGATGCTCACAGCCATCCATTGGAATGAGCACAGGATCCCCA  50

seq1  ATGAAGGAGCTAGAGAAAGTAACCAAGGAGCTGAAGGGGTTTGCAGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGCTAGAGAAAGTAACCAAGGAGCTGAAGGGGTTTGCAGCCCC  100

seq1  ATAGGAGGAACAACAACATGAACTAACAAGTAGCCCCGAGAGCTCCCTGG  150
      || || |||||||| ||||| |||| |||||||||| ||||||||| |||
seq2  ATCGGCGGAACAACCACATGCACTATCAAGTAGCCCGGAGAGCTCCGTGG  150

seq1  GACTAAACCACCAGCCAACGAAAACACATGGTGGGACTCATGGCTCTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAACCACCAGCCAACGAAAACACATGGTGGGACTCATGGCTCTAGC  200

seq1  TGAATATGTAGGAGAGGATGACCTAGTCAGTCATCAACGAGAGGAGATGC  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGAATATGTAGGAGAGGATGACTTAGTCAGTCATCAACGAGAGGAGATGC  250

seq1  CCTTGGTCCTGTGAAGGTTCTATGCCCCATCATAGGGGAATGCCAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCCTGTGAAGGTTCTATGCCCCATCATAGGGGAATGCCAGGGCC  300

seq1  AGGAAGAAAGAGTGGGTGGGTTGGGGAGCAGGGGAAGTGGGGAGGGGAAA  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGAGCGGGTGGGTTGGGGAGCAGGGGAAGTGGGGAGGGGAAA  350

seq1  CTAGGAAAAGGAATAATATTTGAAATTTAAATAAAGAAAATATCTAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAAAGGAATAATATTTGAAATTTAAATAAAGAAAATATCTAATTA  400

seq1  AAAAAAAGAAAAAAGTAGTCTCTGAAAAAATATAATGAATAAAATTTTAT  450
      ||||||||||||||||||| || |||||||||||| ||||||||||||||
seq2  AAAAAAAGAAAAAAGTAGTGTCCGAAAAAATATAAGGAATAAAATTTTAT  450

seq1  TTTGGTACATATAAAATTAGTAATACTAACTATTTTAGCTAATAACAACA  500
      |||||||||| |||||||||||||||| |||||||||| |||| ||| ||
seq2  TTTGGTACATCTAAAATTAGTAATACTGACTATTTTAGGTAATTACAGCA  500

seq1  AGTCATTTTAACCAAAAAATAGAAATTTCACACAGCTCAATATTTCATGA  550
      ||||||||||||| ||||||||||||||| |||||||||| ||||||  |
seq2  AGTCATTTTAACCGAAAAATAGAAATTTCCCACAGCTCAAAATTTCAAAA  550

seq1  GTACTGAAAAACTGCTGGTCAGAAATTGAGATCACAGAATAGATAAAACA  600
      |||   |||||    ||||||  |||||  ||||||| || ||  |||||
seq2  GTA-AAAAAAAAGAATGGTCAACAATTGTCATCACAGTATCGACCAAACA  599

seq1  GCTCATGTCTCAGAAGAATTC  621
      ||||  |||||||||||||||
seq2  GCTCTCGTCTCAGAAGAATTC  620