BAC Information

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BAC

Clone NameB6Ng01-123M21
Chromosome7 (Build37)11 (Build37)
Map Location 109,306,186 - 109,307,248106,909,679 - 106,911,374
singlet/doubletsingletsinglet
Overlap geneNup98
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123M21.bB6Ng01-123M21.g
ACCDH926874DH926875
length1,064232
definitionDH926874|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M21, 5' end.DH926875|Mus musculus domesticus DNA, BAC clone: B6Ng01-123M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,306,186 - 109,307,248)(106,909,679 - 106,911,374)
sequence
gaattctttgttggtaaatgataagttcattacagctccttttcttacaa
ataaatacgggttgggaaaagctgagtgttggtgcacacctttgttccag
cacggagggagcagaagcaggtggctctctgtgtgcccagttccaggaca
ggacagccagggctacacagagaaatctttttttgaaaaaacaaaataaa
aaaggggtcagggtgtgactatagtaggctcagtggtttagtgcactctt
tgctcttgaagaggatctaagcagtttcacagctgtctctagctatagtt
gcagaggatccagattcatcttctgactttctttggacatcaggcatgca
cagacaaaacatacacataaaataaagctaacaaaactcttaaaattatg
ggttgagaactctggtgatggttcactggttaagaccatatgtacaggcc
tgggaacctgaattcaaagcccaagcacccacataacaagccattcaaag
ccacatacatgtctatagtattgtagtggtagagacagaaagattgctgg
cattttcttgtctgtttgcttacctccaagacaaatgaaagaccttgtct
gaacaaagtaaattggaaaatgatccagcaggatacctaaggcccacatc
ttgcttctacatttgctgatgcaccaatattctcacatgtgcatacttcg
cgcacatatccctataagtaaattgctttgtcacaaaaaatagaagtgtg
attttatatttttattgtgtaatttgtttttaaggaaggataatatgtat
tcatttgtatttcatagcattttttccaagtagttaaacatacttgatgc
tgttttgctttccattttgttactgtggtaaacacttgatcgaaggcagc
ttaggaaggaaaagatttatttgtcttatacttcctgcataatacttctg
tcatttcagaagtcaggcagaaatgcaaggtaggaacttgaagtagaaat
catagtgaatactgcttcctggctcactcctcaggctttcttgtttagac
aggcctttgaaatg
aacatgaataataaagccttgtgaaggacttaaaagtcttttgaagaaaa
caaaaatttaactaattcaaaataagttctagtgggtgggtgggtgagca
ccctgatagaagccgatggcttcaagggggtatggagtaggggatttgta
gaggggaaactgctgggcggtggtggcgcacacctttaatcccggcactt
ggaaggcataggcaggcagatttctgatttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109306186_109307248
seq2: B6Ng01-123M21.b_49_1112 (reverse)

seq1  CACTTCAAA-GCCTGTCTAAACA--GAAGCCTGA-GAGTGAGCCAGGAAG  46
      || |||||| |||||||||||||   |||||||| |||||||||||||||
seq2  CATTTCAAAGGCCTGTCTAAACAAGAAAGCCTGAGGAGTGAGCCAGGAAG  50

seq1  CAGTATTTCACTATGATTTCTACTTCAAGTTCCTACCTTGCATTTCTGCC  96
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGTA-TTCACTATGATTTCTACTTCAAGTTCCTACCTTGCATTTCTG-C  98

seq1  CTGACTTCCTGAAATGACAGAAGTA-TATGCAGGAAGTATAAGACAAATA  145
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGACTT-CTGAAATGACAGAAGTATTATGCAGGAAGTATAAGACAAATA  147

seq1  AATCTTTTCCTTCCTAAGCTGCCTTCGATCAAGTGTTTTACCACAGTAAC  195
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATCTTTTCCTTCCTAAGCTGCCTTCGATCAAGTG-TTTACCACAGTAAC  196

seq1  AAAATGGAAAGCAAAACAGCATCAAGTATGTTTAACTACTTGGAAAAAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAAGCAAAACAGCATCAAGTATGTTTAACTACTTGGAAAAAAT  246

seq1  GCTATGAAATACAAATGAATACATATTATCCTTCCTTAAAAACAAATTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAAATACAAATGAATACATATTATCCTTCCTTAAAAACAAATTAC  296

seq1  ACAATAAAAATATAAAATCACACTTCTATTTTTTGTGACAAAGCAATTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAATATAAAATCACACTTCTATTTTTTGTGACAAAGCAATTTA  346

seq1  CTTATAGGGATATGTGCGCGAAGTATGCACATGTGAGAATATTGGTGCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGGATATGTGCGCGAAGTATGCACATGTGAGAATATTGGTGCAT  396

seq1  CAGCAAATGTAGAAGCAAGATGTGGGCCTTAGGTATCCTGCTGGATCATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGTAGAAGCAAGATGTGGGCCTTAGGTATCCTGCTGGATCATT  446

seq1  TTCCAATTTACTTTGTTCAGACAAGGTCTTTCATTTGTCTTGGAGGTAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTACTTTGTTCAGACAAGGTCTTTCATTTGTCTTGGAGGTAAG  496

seq1  CAAACAGACAAGAAAATGCCAGCAATCTTTCTGTCTCTACCACTACAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGACAAGAAAATGCCAGCAATCTTTCTGTCTCTACCACTACAATA  546

seq1  CTATAGACATGTATGTGGCTTTGAATGGCTTGTTATGTGGGTGCTTGGGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACATGTATGTGGCTTTGAATGGCTTGTTATGTGGGTGCTTGGGC  596

seq1  TTTGAATTCAGGTTCCCAGGCCTGTACATATGGTCTTAACCAGTGAACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCAGGTTCCCAGGCCTGTACATATGGTCTTAACCAGTGAACCA  646

seq1  TCACCAGAGTTCTCAACCCATAATTTTAAGAGTTTTGTTAGCTTTATTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGTTCTCAACCCATAATTTTAAGAGTTTTGTTAGCTTTATTTT  696

seq1  ATGTGTATGTTTTGTCTGTGCATGCCTGATGTCCAAAGAAAGTCAGAAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGTTTTGTCTGTGCATGCCTGATGTCCAAAGAAAGTCAGAAGA  746

seq1  TGAATCTGGATCCTCTGCAACTATAGCTAGAGACAGCTGTGAAACTGCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGGATCCTCTGCAACTATAGCTAGAGACAGCTGTGAAACTGCTT  796

seq1  AGATCCTCTTCAAGAGCAAAGAGTGCACTAAACCACTGAGCCTACTATAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCTTCAAGAGCAAAGAGTGCACTAAACCACTGAGCCTACTATAG  846

seq1  TCACACCCTGACCCCTTTTTTATTTTGTTTTTTCAAAAAAAGATTTCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCTGACCCCTTTTTTATTTTGTTTTTTCAAAAAAAGATTTCTCT  896

seq1  GTGTAGCCCTGGCTGTCCTGTCCTGGAACTGGGCACACAGAGAGCCACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCCCTGGCTGTCCTGTCCTGGAACTGGGCACACAGAGAGCCACCT  946

seq1  GCTTCTGCTCCCTCCGTGCTGGAACAAAGGTGTGCACCAACACTCAGCTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCTCCCTCCGTGCTGGAACAAAGGTGTGCACCAACACTCAGCTT  996

seq1  TTCCCAACCCGTATTTATTTGTAAGAAAAGGAGCTGTAATGAACTTATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACCCGTATTTATTTGTAAGAAAAGGAGCTGTAATGAACTTATCA  1046

seq1  TTTACCAACAAAGAATTC  1063
      ||||||||||||||||||
seq2  TTTACCAACAAAGAATTC  1064

seq1: chr11_106909679_106911374
seq2: B6Ng01-123M21.g_236_305 (reverse)

seq1  GAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGG  50
      |||| ||||||||   ||||||| ||||| |||||| | |||||||||||
seq2  GAAA-TCAGAAATCTGCCTGCCTATGCCTTCCAAGTGCCGGGATTAAAGG  49

seq1  CGTGCGCCACCACTGCCCAGCGTGAAGAACTGTATTAAAGGGTCACATAA  100
       |||||||||||| |||||||                             
seq2  TGTGCGCCACCACCGCCCAGC-----------------------------  70

seq1  AGGCGTGCACCACCACTGCCCAGTGTGAAGAACTGTATTAAAGGGTCACA  150
                                                        
seq2  --------------------------------------------------  70

seq1  TAAAGGTGTGCACCACTGCCCAGCGTAAAGAACTGTATTAAAGGGTCACA  200
                                                        
seq2  --------------------------------------------------  70

seq1  TAAAGGCGTGCACCACCACTGCCCAGTGTGAAGAACTGTATTAAAGGGTC  250
                                                        
seq2  --------------------------------------------------  70

seq1  ACATAAAGGTGTGCACCACTGCCCAGCGTAAAGAACTGTATTAAATGTCA  300
                                                        
seq2  --------------------------------------------------  70

seq1  CATAAAGGCGTGCACCACCACTGCCCAGCGTGAAGAACTGTATTAAAGGG  350
                                                        
seq2  --------------------------------------------------  70

seq1  TCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAACTGTATTAAA  400
                                                        
seq2  --------------------------------------------------  70

seq1  TGTCACATAAAGGCGTGCGCCACCACCGCCCAGCGTGAAGAACTGTATTA  450
                                                        
seq2  --------------------------------------------------  70

seq1  AAGGGTCACATAAAGGCGTGCGCCACCACTGCCCAGCGTGAAGAACTGTA  500
                                                        
seq2  --------------------------------------------------  70

seq1  TTAAATGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAACTG  550
                                                        
seq2  --------------------------------------------------  70

seq1  TATTAAAGGGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAA  600
                                                        
seq2  --------------------------------------------------  70

seq1  CTGTATTAAAGGGTCACATAAAGGCGTGCGCCACCACCGCCCAGCGTGAA  650
                                                        
seq2  --------------------------------------------------  70

seq1  GAACTGTATTAAAGGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTG  700
                                                        
seq2  --------------------------------------------------  70

seq1  AAGAACTGTATTAAAGGGTCACATAAAGGTGTGCGCCACCACCGCCCAGC  750
                                                        
seq2  --------------------------------------------------  70

seq1  GTGAAGAACTGTATTAAAGGGTCACATAAAGGCGTGCGCCACCACTGCCC  800
                                                        
seq2  --------------------------------------------------  70

seq1  AGCGTGAAGAACTGTATTAAATGTCACATAAAGGCGTGCGCCACCACCGC  850
                                                        
seq2  --------------------------------------------------  70

seq1  CCAGCGTGAAGAACTGTATTAAATGTCACATAAAGGCGTGCACCACCACC  900
                                                        
seq2  --------------------------------------------------  70

seq1  GCCCAGCGTGAAGAACTGTATTAAAGGGTCACATAAAGGCGTGCACCACC  950
                                                        
seq2  --------------------------------------------------  70

seq1  ACCGCCCAGCGTGAAGAACTGTATTAAAGGGTCACATAAAGGCGTGCACC  1000
                                                        
seq2  --------------------------------------------------  70

seq1  ACCACCGCCCAGCGTGAAGAACTGTATTAAAGGGTCACATAAAGGCGTGC  1050
                                                        
seq2  --------------------------------------------------  70

seq1  ACCACCACCGCCCAGCGTGAAGAACTGTATTAAATGTCACATAAAGGCGT  1100
                                                        
seq2  --------------------------------------------------  70

seq1  GCACCACCACCGCCCAGCGTGAAGAACTGTATTAAAGGGTGACATAAAGG  1150
                                                        
seq2  --------------------------------------------------  70

seq1  CGTGCACCACCACCGCCCAGCGTGAAGAACTGTATTAAATGTCACATAAA  1200
                                                        
seq2  --------------------------------------------------  70

seq1  GGCGTGCACCACCACCGCCCAGCGTGAAGAACTGTATTAAAGGGTCACAT  1250
                                                        
seq2  --------------------------------------------------  70

seq1  AAAGGCATGCACCACCACCGCACAGCGTGAAGAACTGTATTAAAGGGTCA  1300
                                                        
seq2  --------------------------------------------------  70

seq1  CATAAAGGCGTGTGCCACCACCGCCCAGCGTGAAGAACTGTATTAAAGGG  1350
                                                        
seq2  --------------------------------------------------  70

seq1  TCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAACTGTATTAAA  1400
                                                        
seq2  --------------------------------------------------  70

seq1  TGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAACTGTATTA  1450
                                                        
seq2  --------------------------------------------------  70

seq1  AAGGGTGACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAACTGTA  1500
                                                        
seq2  --------------------------------------------------  70

seq1  TTAAATGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAACTG  1550
                                                        
seq2  --------------------------------------------------  70

seq1  TATTAAATGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGAAC  1600
                                                        
seq2  --------------------------------------------------  70

seq1  TGTATTAAATGTCACATAAAGGCGTGCACCACCACCGCCCAGCGTGAAGA  1650
                                                        
seq2  --------------------------------------------------  70

seq1  ACTGTATTAAAGGGTCACATAAAGGTGTGCGCCACCACCGCCCAGC  1696
                                                    
seq2  ----------------------------------------------  70