This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-125B19
Chromosome
7 (Build37)
Map Location
143,878,256 - 144,034,504
singlet/doublet
doublet
Overlap gene
EG621677
,
EG668771
Upstream gene
Mki67
,
LOC668764
,
LOC546009
Downstream gene
Mgmt
,
EG621804
,
Ebf3
,
9430038I01Rik
,
Txnl2
Link
Open Mouse BAC browser
Click to get alignment info.
name
Mki67
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17345
MGI:106035
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 294 ESTs, 1 Protein
name
LOC668764
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668764
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 Proteins
pseudo
: _no_value
name
LOC546009
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:546009
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 95 ESTs, 4 Proteins
pseudo
: _no_value
name
EG621677
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:621677
MGI:3644248
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
EG668771
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668771
MGI:3648409
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 698 ESTs, 4 Proteins
pseudo
: _no_value
name
Mgmt
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17314
MGI:96977
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG621804
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:621804
MGI:3645889
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
name
Ebf3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13593
MGI:894289
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
9430038I01Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:77252
MGI:1924502
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs
name
Txnl2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:30926
MGI:1353653
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Mki67
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149257741
GeneID:17345
MGI:106035
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 294 ESTs, 1 Protein
product
: antigen identified by monoclonal antibody Ki 67
transcript_id
: XM_001479849.1
name
EG621677
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94381081
GeneID:621677
MGI:3644248
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: predicted gene, EG621677
transcript_id
: XM_896571.2
name
Mgmt
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:114326520
GeneID:17314
MGI:96977
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: O-6-methylguanine-DNA methyltransferase
transcript_id
: NM_008598.2
name
EG621804
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94381083
GeneID:621804
MGI:3645889
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
product
: predicted gene, EG621804
transcript_id
: XM_886207.2
name
Ebf3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:83816925
GeneID:13593
MGI:894289
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: early B-cell factor 3
transcript_id
: NM_010096.2
name
9430038I01Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149257744
GeneID:77252
MGI:1924502
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs
product
: RIKEN cDNA 9430038I01 gene, transcript variant 1
transcript_id
: XM_133909.7
name
Txnl2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142348626
GeneID:30926
MGI:1353653
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: thioredoxin-like 2
transcript_id
: NM_023140.4
name
Mki67
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149257742
GeneID:17345
MGI:106035
definition
codon_start
: 1
product
: antigen identified by monoclonal antibody Ki 67
protein_id
: XP_001479899.1
name
EG621677
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82915324
GeneID:621677
MGI:3644248
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_901664.1
name
Mgmt
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678878
CCDS:CCDS21945.1
GeneID:17314
MGI:96977
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0006307 - DNA dealkylation [Evidence IDA]; GO:0006281 - DNA repair [Evidence IMP]; GO:0043281 - regulation of caspase activity [Evidence IMP]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
note
: O-6-alkylguanine-DNA alkyltransferase
product
: O-6-methylguanine-DNA methyltransferase
protein_id
: NP_032624.1
name
EG621804
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94381084
GeneID:621804
MGI:3645889
definition
codon_start
: 1
product
: similar to acidic ribosomal phosphoprotein P1
protein_id
: XP_891300.2
name
Ebf3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753706
CCDS:CCDS21946.1
GeneID:13593
MGI:894289
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence IEA]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: Olf-1/EBF-like 2
product
: early B-cell factor 3
protein_id
: NP_034226.1
name
9430038I01Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149257745
GeneID:77252
MGI:1924502
definition
codon_start
: 1
product
: hypothetical protein LOC77252 isoform 1
protein_id
: XP_133909.5
name
Txnl2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31981269
CCDS:CCDS21948.1
GeneID:30926
MGI:1353653
definition
GO_function
: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]
GO_process
: GO:0045454 - cell redox homeostasis [Evidence IEA]
codon_start
: 1
note
: PKC interacting cousin of thioredoxin
product
: thioredoxin-like 2
protein_id
: NP_075629.2
name
LOC668764
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668764
definition
number
: 1
pseudo
: _no_value
name
LOC546009
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149257743
GeneID:546009
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 95 ESTs, 4 Proteins
product
: similar to CDNA sequence BC005624
pseudo
: _no_value
transcript_id
: XR_034426.1
name
EG668771
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:149257820
GeneID:668771
MGI:3648409
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 698 ESTs, 4 Proteins
product
: predicted gene, EG668771
pseudo
: _no_value
transcript_id
: XR_034862.1
clone name
MSMg01-324J13
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-161A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342J14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-181L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-375E20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-291D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-101K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-141J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-442K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348P20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498D07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321D07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-073M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-431E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-103F19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-535F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-389G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-428O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-147E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415C10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-190P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-181M15
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-289N21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-429K20
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-382A18
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-377B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182H04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-517D24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-441N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376D21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447E16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152M08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-136H04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-213I04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319E23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-289I17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-109N09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-002K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-025B01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187C20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180D09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-021C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-107L12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-348L18
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