BAC Information

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BAC

Clone NameB6Ng01-125E11
Chromosome7 (Build37)
Map Location 11,161,234 - 11,300,514
singlet/doubletdoublet
Overlap geneV1re9, V1rl1, EG628596, Nlrp4b
Upstream geneLOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580
Downstream geneLOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125E11.bB6Ng01-125E11.g
ACCDH927959DH927960
length1,069954
definitionDH927959|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E11, 5' end.DH927960|Mus musculus domesticus DNA, BAC clone: B6Ng01-125E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,299,436 - 11,300,514)(11,161,234 - 11,162,136)
sequence
gaattccaatatccagcagtgtggggatgtcagaatccatgatcccattt
ctccttagagcctcctcattaaacacagatatatcagtccacatgccctc
tacagctagaaaacacaagttatccagcaggtcttcgctattgttacttg
gattttgggcattgtggggaatgaacaaatttaagatgtgagtggtatac
agggaggtggtacgtcggcagatggagactgggtcttttccactctctat
ctcatttttaagacaagtagccaccatgtagcagaccacaggggcctgac
atacagtgaacagctgctcattttctcttatcaaactgaaggcctcctgg
gcaatgttcctatcttggaacaagctgtggaaacacatattaatattgtt
ttccttgaatccggttattgttctcacatttgtgtactcaatccagtcct
tcaaatccttaaaagtctcacaactagtggagatgaggagagatgattca
gggagtatcttcttcctgagcaaactgctcagcaatacatttactggctg
cttctccatgcaattgtaacacagctgcgaatcctgttgggtaacattcc
attccatcccttctaagctgtcaatgatgaataagagtttctcaggttgg
gataggatctcctccatgggagctgaggggctaggccactctctggagat
cagatcagccaggcttgctgtctgcaattgcttcacatcatgacagcaga
agtagaagatataagagaatttgttctgaaataccaggccttctgaccag
acaatcattaaattttttaacagaatagtcttgccaattccagctacacc
ttgcaggacaaccatctttggattgttttcagttccatttggtacaagaa
gttctcaagatgatcatattcatcctggaagaaattctgaatactgatgt
tgaactttctagaacatcatgggtcagcttctctttaatgagctcgatat
attgttgagtgtgctgtcagagagtgggaaaaagccacaatatatcaagt
cagtaacatttactcatat
gaattcttcgctcctaatgtcttggactcttttttttttttctggtttgc
tttgtccaactttgatgtgattttttttaacctgttgtatctaattttgt
tttgtttggtgttatgtctttgaaacatgttcttcactgatgacaaaaag
ggagtggatctgcaacaaaactgaggaattgggaggaaaagaaagaaggg
aagctgtaatcagtacatattttatgagaatagaatctcttttcaataaa
attttacaaaaagaaaaatatcacatcaaatatgataatcaataaattcc
tgtcggattccatctgtgtggttcatttcatttactgatgagtttaggtg
gaaccgtctctaaatttttggaaatattatgatccaactcttttaaactg
aaataagtttctttctttctttctttctttctttctttctttctttcttt
ctttctttcttcctttctttctttctttatttattgagacagtgcttctc
tgtataatcctggctgtcctggaactcactttgtagaccaggctggcctc
gaactcagaaatctgccttcctctgcctcccgagtgctgggattaatggt
gtgcaccaccacgcccagcgtctgaaataagttttaactggctgtctgta
cgtagaaaaatggaatagacccatatttgtcaccttgcacaaatctcaag
tccaagtgaatcaaggacctcaacataaaacctgatacgctcaatctaac
tgaagaggaagtaggaaagagccttgagctcattggcacagggggaaatt
tcctaaacagaactccatgactcaccctctaagatcaagaattgataaat
gggacctcatgaaactggaaagcttctgtagacaaagacatagtcagtaa
gacaaatcagcacctacagatttgagaaaatctcactaactcacatctga
taga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11299436_11300514
seq2: B6Ng01-125E11.b_48_1116 (reverse)

seq1  ATATGAGTAAATGTTTAACTTAACTTTGATATATTGTGGCCTTTTTTCCC  50
      |||||||||||||||  ||| |   |||||||||||||||  ||||||||
seq2  ATATGAGTAAATGTT--ACTGA--CTTGATATATTGTGGC--TTTTTCCC  44

seq1  ACTCTCTGACAGCACACTCAACAATATATCGAGCTCATTTAAAGGAGAAG  100
      |||||||||||||||||||||||||||||||||||||||  || ||||||
seq2  ACTCTCTGACAGCACACTCAACAATATATCGAGCTCATT--AAAGAGAAG  92

seq1  CTGACCCATGATTGTTCTAGAAAGTTCAACATCAGTATTCAGAATTTCTT  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCATGA-TGTTCTAGAAAGTTCAACATCAGTATTCAGAATTTCTT  141

seq1  CCAGGATGAATATGATCATCTTGAGAACCTTCTTGTACCAAATGGAACTG  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAGGATGAATATGATCATCTTGAGAA-CTTCTTGTACCAAATGGAACTG  190

seq1  AAAACAATCCAAAGATGGTTGTCCTGCAAGGTGTAGCTGGAATTGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCCAAAGATGGTTGTCCTGCAAGGTGTAGCTGGAATTGGCAAG  240

seq1  ACTATTCTGTTAAAAAATTTAATGATTGTCTGGTCAGAAGGCCTGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTGTTAAAAAATTTAATGATTGTCTGGTCAGAAGGCCTGGTATT  290

seq1  TCAGAACAAATTCTCTTATATCTTCTACTTCTGCTGTCATGATGTGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAAATTCTCTTATATCTTCTACTTCTGCTGTCATGATGTGAAGC  340

seq1  AATTGCAGACAGCAAGCCTGGCTGATCTGATCTCCAGAGAGTGGCCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGACAGCAAGCCTGGCTGATCTGATCTCCAGAGAGTGGCCTAGC  390

seq1  CCCTCAGCTCCCATGGAGGAGATCCTATCCCAACCTGAGAAACTCTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTCCCATGGAGGAGATCCTATCCCAACCTGAGAAACTCTTATT  440

seq1  CATCATTGACAGCTTAGAAGGGATGGAATGGAATGTTACCCAACAGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGACAGCTTAGAAGGGATGGAATGGAATGTTACCCAACAGGATT  490

seq1  CGCAGCTGTGTTACAATTGCATGGAGAAGCAGCCAGTAAATGTATTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTGTGTTACAATTGCATGGAGAAGCAGCCAGTAAATGTATTGCTG  540

seq1  AGCAGTTTGCTCAGGAAGAAGATACTCCCTGAATCATCTCTCCTCATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTGCTCAGGAAGAAGATACTCCCTGAATCATCTCTCCTCATCTC  590

seq1  CACTAGTTGTGAGACTTTTAAGGATTTGAAGGACTGGATTGAGTACACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTTGTGAGACTTTTAAGGATTTGAAGGACTGGATTGAGTACACAA  640

seq1  ATGTGAGAACAATAACCGGATTCAAGGAAAACAATATTAATATGTGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAACAATAACCGGATTCAAGGAAAACAATATTAATATGTGTTTC  690

seq1  CACAGCTTGTTCCAAGATAGGAACATTGCCCAGGAGGCCTTCAGTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGTTCCAAGATAGGAACATTGCCCAGGAGGCCTTCAGTTTGAT  740

seq1  AAGAGAAAATGAGCAGCTGTTCACTGTATGTCAGGCCCCTGTGGTCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAATGAGCAGCTGTTCACTGTATGTCAGGCCCCTGTGGTCTGCT  790

seq1  ACATGGTGGCTACTTGTCTTAAAAATGAGATAGAGAGTGGAAAAGACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCTACTTGTCTTAAAAATGAGATAGAGAGTGGAAAAGACCCA  840

seq1  GTCTCCATCTGCCGACGTACCACCTCCCTGTATACCACTCACATCTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCTGCCGACGTACCACCTCCCTGTATACCACTCACATCTTAAA  890

seq1  TTTGTTCATTCCCCACAATGCCCAAAATCCAAGTAACAATAGCGAAGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCATTCCCCACAATGCCCAAAATCCAAGTAACAATAGCGAAGACC  940

seq1  TGCTGGATAACTTGTGTTTTCTAGCTGTAGAGGGCATGTGGACTGATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATAACTTGTGTTTTCTAGCTGTAGAGGGCATGTGGACTGATATA  990

seq1  TCTGTGTTTAATGAGGAGGCTCTAAGGAGAAATGGGATCATGGATTCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTAATGAGGAGGCTCTAAGGAGAAATGGGATCATGGATTCTGA  1040

seq1  CATCCCCACACTGCTGGATATTGGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  CATCCCCACACTGCTGGATATTGGAATTC  1069

seq1: chr7_11161234_11162136
seq2: B6Ng01-125E11.g_68_968

seq1  GAATTCTTCGCTCCTAATGTCTTGGACTC-TTTTTTTTTTTCTGGTTTGC  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCTTCGCTCCTAATGTCTTGGACTCTTTTTTTTTTTTCTGGTTTGC  50

seq1  TTTGTCCAACTTTGATGTGATTTTTTTTAACCTGTTGTATCTAATTTTGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAACTTTGATGTGATTTTTTTTAACCTGTTGTATCTAATTTTGT  100

seq1  TTTGTTTGGTGTTATGTCTTTGAAACATGTTCTTCACTGATGACAAAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTGTTATGTCTTTGAAACATGTTCTTCACTGATGACAAAAAG  150

seq1  GGAGTGGATCTGCAACAAAACTGAGGAATTGGGAGGAAAAGAAAGAAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGATCTGCAACAAAACTGAGGAATTGGGAGGAAAAGAAAGAAGGG  200

seq1  AAGCTGTAATCAGTACATATTTTATGAGAATAGAATCTCTTTTCAATAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAATCAGTACATATTTTATGAGAATAGAATCTCTTTTCAATAAA  250

seq1  ATTTTACAAAAAGAAAAATATCACATCAAATATGATAATCAATAAATTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAAAAAGAAAAATATCACATCAAATATGATAATCAATAAATTCC  300

seq1  TGTCGGATTCCATCTGTGTGGTTCATTTCATTTACTGATGAGTTTAGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGATTCCATCTGTGTGGTTCATTTCATTTACTGATGAGTTTAGGTG  350

seq1  GAACCGTCTCTAAATTTTTGGAAATATTATGATCCAACTCTTTTAAACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGTCTCTAAATTTTTGGAAATATTATGATCCAACTCTTTTAAACTG  400

seq1  AAATAAGTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  450

seq1  CTTTCTTTCTTCCTTTCTTTCTTTCTTTATTTATTGAGACAGTGCTTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTCCTTTCTTTCTTTCTTTATTTATTGAGACAGTGCTTCTC  500

seq1  TGTATAATCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  550

seq1  GAACTCAGAAATCTGCCTTCCTCTGCCTCCCGAGTGCTGGGATTAATGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGCCTTCCTCTGCCTCCCGAGTGCTGGGATTAATGGT  600

seq1  GTGCACCACCACGCCCAGCGTCTGAAATAAGTTTTAACTGGCTGTCTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACCACGCCCAGCGTCTGAAATAAGTTTTAACTGGCTGTCTGTA  650

seq1  CGTAGAAAAATGGAATAGACCCATATTTGTCACCTTGCACAAATCTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAAAAATGGAATAGACCCATATTTGTCACCTTGCACAAATCTCAAG  700

seq1  TCCAAGTGAATCAAGGACCTCAACATAAAACCTGATACGCTCAATCTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGAATCAAGGACCTCAACATAAAACCTGATACGCTCAATCTAAC  750

seq1  TGAAGAGGAAGTAGGAAAGAGCCTTGAGCTCATTGGCACAGGGGGAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGAAGTAGGAAAGAGCCTTGAGCTCATTGGCACAGGGGGAAATT  800

seq1  TCCTAAACAGAACTCCAATGACTCACCCTCTAAGATCAAGAATTGATAAA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTAAACAGAACTCC-ATGACTCACCCTCTAAGATCAAGAATTGATAAA  849

seq1  TGGGACCTCATGAAACTGGAAAGCTTCTGTAAGACAAAGGACATAGTCAG  899
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TGGGACCTCATGAAACTGGAAAGCTTCTGT-AGACAAA-GACATAGTCAG  897

seq1  TAAG  903
      ||||
seq2  TAAG  901