BAC Information

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BAC

Clone NameB6Ng01-125O12
Chromosome7 (Build37)
Map Location 89,079,276 - 89,232,285
singlet/doubletdoublet
Overlap geneHdgfrp3, Bnc1
Upstream geneSec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125O12.bB6Ng01-125O12.g
ACCDH928412DH928413
length7531,036
definitionDH928412|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O12, 5' end.DH928413|Mus musculus domesticus DNA, BAC clone: B6Ng01-125O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,079,276 - 89,080,036)(89,231,236 - 89,232,285)
sequence
gaattcctcctcgggcagcgaccgcaaacacgatcttattattgttctcg
cgcgcgctcagcattccccccctccacccctcgcccgccccgcttccctc
ccctcgcgcgccggccggttaattcctaggtgcacggccggctttctcgg
agaaaccgcgcgcgccgcctggcttgctccgcgggctgctggtgggcgcg
tcctcccgcagcagcgaagccggtgccccgcgggtgggagcgcctactcc
aaagacgcccgccgcctgctctcttttgttcttggccgggagctgcctgg
tgaagcccagccaatcaccacccggccgcccctctttcccctcctgctcg
cgcccaccccctgcggactgcaccccctttctgactgccccctacccgtg
ggccacttcctcgggtgctctctggtgagttgggggagaggggggacaaa
ggcttcccaggcatgggggatagctgcgcaggggactcgctgcctggtca
gtaggtacctggaaagaacaagggcaaggttcttgccccaggtctgcctt
taatgatgcagtgtgacccacctagggcaagcgacttcactggagtcaag
gccagtcctcaccgacaggatggcacagtcgggctttgaacattggatct
atatggttcagtgcccatagcctaagtttgcttctctgtgtggggtcttc
attggcctatatttttggggcataggactttaccctgacaagtcaattca
att
gaattcagactttctgggttcattttctccccaccagaagatggtgtttc
cctgaaagtggggcagtgtgctcgctcagctctgagtctgaagtgcccag
cttcataggggaagagtctgccctgctctgtgggggaagagtctgtcttt
ctggtactcagatgataccatttcctctccaaccaaggctgtggctttag
ttgaagctagtgccatccagctcttccatggtcaaacaaactagggtttg
gctcgtttgggtcccaaatgagggagatggcaaagggcttggggaggaga
gagacttttagaatataattagaaatgaagcaataggaccacaccaccat
gtagaattaaataataataaattctcagtggtgggtttgctacctgcccc
aatggtttatgttcccgaatgaaagacagatacacaccctttatatttta
atatgacttaaacagcacactagctgggccactggctaacatccatgctg
ttaatccgagctattatttgcaaaatctatgctctaccttggcttctctg
tacccacatgggcagccctcactcagggcctgcccccccccttcacatgg
aggctatgtgtgctctctgtcctccactcttattagacatggtgtctctc
ctctcctccacctcccacagcatagggggatctcctccttcctcctcctc
caagtcccaaatccaagaatcctaaaatcccacctctgtctgccctctct
agctattggctgttgtcatctttatttatcaatcagaacccaattggggg
caagttcccagatgctatgggcagacaaccattctccttctaacaggttt
ttggggaacataattagcattagaatataagcaactacattcccactcaa
cccccctttcacctccaggtagagatggagtagatgtgagacaggggatg
tgagacctcctcatttcttagatcttcaggtcaattcctttgtcagagct
atgagctttcagtcagctcctaatgcccacaaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89079276_89080036
seq2: B6Ng01-125O12.b_50_802

seq1  GAATTCCTCCTCGGGCAGCGACCGCAAACACGATCTTATTATTGTTCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCGGGCAGCGACCGCAAACACGATCTTATTATTGTTCTCG  50

seq1  CGCGCGCTCAGCATTCCCCCCCTCCACCCCTCGCCCGCCCCGCTTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGCTCAGCATTCCCCCCCTCCACCCCTCGCCCGCCCCGCTTCCCTC  100

seq1  CCCTCGCGCGCCGGCCGGTTAATTCCTAGGTGCACGGCCGGCTTTCTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGCGCGCCGGCCGGTTAATTCCTAGGTGCACGGCCGGCTTTCTCGG  150

seq1  AGAAACCGCGCGCGCCGCCTGGCTTGCTCCGCGGGCTGCTGGTGGGCGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCGCGCGCGCCGCCTGGCTTGCTCCGCGGGCTGCTGGTGGGCGCG  200

seq1  TCCTCCCGCAGCAGCGAAGCCGGTGCCCCGCGGGTGGGAGCGCCTACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCGCAGCAGCGAAGCCGGTGCCCCGCGGGTGGGAGCGCCTACTCC  250

seq1  AAAGACGCCCGCCGCCTGCTCTCTTTTGTTCTTGGCCGGGAGCTGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGCCCGCCGCCTGCTCTCTTTTGTTCTTGGCCGGGAGCTGCCTGG  300

seq1  TGAAGCCCAGCCAATCACCACCCGGCCGCCCCTCTTTCCCCTCCTGCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCCAGCCAATCACCACCCGGCCGCCCCTCTTTCCCCTCCTGCTCG  350

seq1  CGCCCACCCCCTGCGGACTGCACCCCCTTTCTGACTGCCCCCTACCCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACCCCCTGCGGACTGCACCCCCTTTCTGACTGCCCCCTACCCGTG  400

seq1  GGCCACTTCCTCGGGTGCTCTCTGGTGAGTTGGGGGAGAGGGGGGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTTCCTCGGGTGCTCTCTGGTGAGTTGGGGGAGAGGGGGGACAAA  450

seq1  GGCTTCCCAGGCATGGGGGATAGCTGCGCAGGGGACTCGCTGCCTGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCAGGCATGGGGGATAGCTGCGCAGGGGACTCGCTGCCTGGTCA  500

seq1  GTAGGTACCTGGAAAGAACAAGGGCAAGGTTCTTGCCCCAGGTCTGCC-T  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTAGGTACCTGGAAAGAACAAGGGCAAGGTTCTTGCCCCAGGTCTGCCTT  550

seq1  TAATGATGCAGTGTGACCCACCTAGGGCAAGCGACTTCACTGGAGTCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGCAGTGTGACCCACCTAGGGCAAGCGACTTCACTGGAGTCAAG  600

seq1  GCCAGTCCTCACCGACAGGATGGCACAGTCGGGCTTTGAACA-TGGATCT  648
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAGTCCTCACCGACAGGATGGCACAGTCGGGCTTTGAACATTGGATCT  650

seq1  ATATGGTTCAGTGCCCATAGCCTAAGTTATGCTTCTCTGTGTGGGGCCTT  698
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ATATGGTTCAGTGCCCATAGCCTAAGTT-TGCTTCTCTGTGTGGGGTCTT  699

seq1  CATGGGCCAATAATTTTGGGGCAAAGGAC-TTACCCTGACAAGTCAAATC  747
      ||| |||| ||| |||||||||| ||||| ||||||||||||||||| ||
seq2  CATTGGCCTATATTTTTGGGGCATAGGACTTTACCCTGACAAGTCAATTC  749

seq1  AGTTGTTTTCAATT  761
      | ||          
seq2  AATT----------  753

seq1: chr7_89231236_89232285
seq2: B6Ng01-125O12.g_69_1104 (reverse)

seq1  AAGTTTGTGGGGCAATTAGGAGCCTGACTAGAAAGCTCATAAGCTCTGAC  50
      |||||||||||   |||||||| |||||| |||||||||| |||||||||
seq2  AAGTTTGTGGG--CATTAGGAG-CTGACT-GAAAGCTCAT-AGCTCTGAC  45

seq1  AAAAGGAATTTGACTTGAAGATTCTAAAGAAAATGA-GAGGTCTTCACCA  99
       ||||||| ||||| |||||| |||||   |||||| |||||| ||| ||
seq2  -AAAGGAA-TTGACCTGAAGA-TCTAA--GAAATGAGGAGGTC-TCA-CA  88

seq1  TCCCCCTGTCTCACATCTACTCCATCTCCTTACCTGGAGGGTGAAAGGGG  149
      | ||||||||||||||||||||||||||  |||||||| |||||||||||
seq2  T-CCCCTGTCTCACATCTACTCCATCTC--TACCTGGA-GGTGAAAGGGG  134

seq1  GGTTGGAGTGGGAATGTAGTTGCTTATATTCTAATGCTAATTATGTTCCC  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTT-GAGTGGGAATGTAGTTGCTTATATTCTAATGCTAATTATGTTCCC  183

seq1  CAAAAACCTGTTAGAAGGAGAATGGTTGTCTGCCCATAGCATCTGGGAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCTGTTAGAAGGAGAATGGTTGTCTGCCCATAGCATCTGGGAAC  233

seq1  TTGCCCCCAATT-GGTTCTGATTGATAAATAAAGATGACAACAGCCAATA  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCAATTGGGTTCTGATTGATAAATAAAGATGACAACAGCCAATA  283

seq1  GCTAGAGAGGGCAGACAGAGGTGGGATTTTAGGATTCTTGGATTTGGGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAGGGCAGACAGAGGTGGGATTTTAGGATTCTTGGATTTGGGAC  333

seq1  TTGGAGGAGGAGGAAGGAGGAGAT-CCCCTATGCTGTGGGAGGTGGAGGA  397
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGGAGGAGGAGGAAGGAGGAGATCCCCCTATGCTGTGGGAGGTGGAGGA  383

seq1  GAGGAGAGACACCATGTCTAATAAGAGTGGAGGACAGAGAGCACACATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGACACCATGTCTAATAAGAGTGGAGGACAGAGAGCACACATAG  433

seq1  CCTCCATGTGAAGGGGGGGGGCAGGCCCTGAGTGAGGGCTGCCCATGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGTGAAGGGGGGGGGCAGGCCCTGAGTGAGGGCTGCCCATGTGG  483

seq1  GTACAGAGAAGCCAAGGTAGAGCATAGATTTTGCAAATAATAGCTCGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGAAGCCAAGGTAGAGCATAGATTTTGCAAATAATAGCTCGGAT  533

seq1  TAACAGCATGGATGTTAGCCAGTGGCCCAGCTAGTGTGCTGTTTAAGTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATGGATGTTAGCCAGTGGCCCAGCTAGTGTGCTGTTTAAGTCA  583

seq1  TATTAAAATATAAAGGGTGTGTATCTGTCTTTCATTCGGGAACATAAACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATATAAAGGGTGTGTATCTGTCTTTCATTCGGGAACATAAACC  633

seq1  ATTGGGGCAGGTAGCAAACCCACCACTGAGAATTTATTATTATTTAATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGCAGGTAGCAAACCCACCACTGAGAATTTATTATTATTTAATTC  683

seq1  TACATGGTGGTGTGGTCCTATTGCTTCATTTCTAATTATATTCTAAAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTGGTGTGGTCCTATTGCTTCATTTCTAATTATATTCTAAAAGT  733

seq1  CTCTCTCCTCCCCAAGCCCTTTGCCATCTCCCTCATTTGGGACCCAAACG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCCCCAAGCCCTTTGCCATCTCCCTCATTTGGGACCCAAACG  783

seq1  AGCCAAACCCTAGTTTGTTTGACCATGGAAGAGCTGGATGGCACTAGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACCCTAGTTTGTTTGACCATGGAAGAGCTGGATGGCACTAGCTT  833

seq1  CAACTAAAGCCACAGCCTTGGTTGGAGAGGAAATGGTATCATCTGAGTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAAGCCACAGCCTTGGTTGGAGAGGAAATGGTATCATCTGAGTAC  883

seq1  CAGAAAGACAGACTCTTCCCCCACAGAGCAGGGCAGACTCTTCCCCTATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGACAGACTCTTCCCCCACAGAGCAGGGCAGACTCTTCCCCTATG  933

seq1  AAGCTGGGCACTTCAGACTCAGAGCTGAGCGAGCACACTGCCCCACTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGCACTTCAGACTCAGAGCTGAGCGAGCACACTGCCCCACTTTC  983

seq1  AGGGAAACACCATCTTCTGGTGGGGAGAAAATGAACCCAGAAAGTCTGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACACCATCTTCTGGTGGGGAGAAAATGAACCCAGAAAGTCTGAA  1033

seq1  TTC  1050
      |||
seq2  TTC  1036