BAC Information

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BAC

Clone NameB6Ng01-128D17
Chromosome7 (Build37)
Map Location 11,194,578 - 11,195,695
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9
Downstream geneV1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D17.bB6Ng01-128D17.g
ACCDH930141DH930142
length1,0191,112
definitionDH930141|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D17, 5' end.DH930142|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ggaattcacagaaactgaacaacttagtattgaatgaagactgcttaaaa
aaatactaataaataaattagaaacattcatcatttactgaaaatctata
taaaccatatccaaacttatgaggcacaatgatggtagttttgagaggca
cgtctccagcactaagtgccaatgttaaagaaaaaataacaaaacaaatg
agaccatcttgtattagtaacttaataggacgcatggaagacctagaaca
atatggagaaatcacagtcaaaatgagtagaaagtaagaaatattcactc
tcagttctgatagtaataaaaaagaacaataaatcaacaataaaagatac
accaaatcaatgagacaaaatattggttccttaagaaaaattaataaaat
taacaaacctttaaccaatgaaataaagggcagagagagaagagtatcca
aatttacagaattagaactaaatggtacataacagcagaaccatggtaaa
tcagagagtcttagggatataccttaagagatataagggaaacaagcctt
tcacaggattttcaaataatacaaaatatcttaactctaacaaaacaggt
aaaagtcttctgtgataaaagaaggagaagaaaatatcagaagatgtcaa
gatctatgtttgtggatcagtaggaataacacagtataaatgctcatcct
accaaaagaaatgtaagaatcaacacaacccccaccaaatctaacacttt
tcttcacagatgaggaaaggacactttttcagctctatatggaaaaagga
aaaaaatctgaatagtaaaagaactgatgaaagtataaacatatccaatt
tcaggctgtattacagaagaatagtgacagaaacagcaaagtattgacac
aaaaacagagacactaatcaaataattaaattgaaaactcatatatacac
ataatcaccaccctttctgaatacttactctttgaataagaagaaagagg
gaggaggggaggggagaga
gaattcataccttagtcagggtcagagttcagaaatattggaatatattt
gatggcatgatggcctcaaattgtgattctatgagggttacatatggaca
tcagctgccatttaacaagaaaaataaaaccaaactcatttcctttcttc
cttcattctgtttttccttcactccttcattccttccttttgttcgtgac
atctactttttcaattaatgaaacaaaaattaaaaccatacacttcaagg
gaatttcacaaataaagttcaatttgtaacagtgaatagagtaaaaacag
tactaaaaaaaatctcaaaagttccctctaagtaaacaaaacagatccct
gcttcattgttgaaaagattagacctattggtaaacatttcagaggttag
accatatcttacttgtgaagagcatttataaatttataagtatatcagtg
actagtatgaatttggatgttttaattagtcactatgattgtgtggatgc
attattttcttcctcagcactggtatttggaaatatcattttaaaaaatg
atctatattcaatagttagaaaaatgcttgtgagtaacttgccagaatgc
tagagggaaaacaaccaatttggaatgcattttgtaccactcactaatat
ttcctacataaagattttcaagagacaattttaatttttaaattctatct
tattgtttgttttgtttcatgttatagaaaactttatgagagaaacctca
taaacctatctgatttagagaagggacaaatagcatgtgctgatttgtaa
agttgttataattcagaacctatggatccatcactgtgggaactggtgtt
tgagatggcctgtcaatcttagaatattttgctcatcagtctcttgactt
tgagtacattgacttagctgattttgcttccattcacggtcatgtttttc
tttcctaataatgatttttcactgttttgcacttttgtaaacttggtttt
cttcagtcacctgttattcagcaactttcaaagtttttcttgcatatttt
atgcatttagcatcataccactcctgaccctgtggttgtagtagagcagc
tttcgttgtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11194578_11195695
seq2: B6Ng01-128D17.g_70_1181 (reverse)

seq1  GTGACAAAGGAAGCTGCCTCTACTACAACCACAGGGTTCAGGAGTGGTAT  50
      ||||||| | |||||| ||||||||||||||||||| |||||||||||||
seq2  GTGACAACGAAAGCTG-CTCTACTACAACCACAGGG-TCAGGAGTGGTAT  48

seq1  GATGCTAAAATTGCATAAATATTGCAAGAAAAACTTTTGAAAGTTTGCTG  100
      |||||||||  ||||||||   |||||||||||| |||||||| ||||||
seq2  GATGCTAAA--TGCATAAAATATGCAAGAAAAAC-TTTGAAAG-TTGCTG  94

seq1  AATAACAGGTGACTGAAGAAAACCAAGTTTACAAAAGTGCAAAACAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGGTGACTGAAGAAAACCAAGTTTACAAAAGTGCAAAACAGTGA  144

seq1  AAAATCATTATTAGGAAAGAAAAACATGACCCTGAATGGAAGCAAAATCA  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAATCATTATTAGGAAAGAAAAACATGACCGTGAATGGAAGCAAAATCA  194

seq1  GCTAAGTCAATGTACTCAAAGTCAAGAGACTGATGAGCAAAATATTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCAATGTACTCAAAGTCAAGAGACTGATGAGCAAAATATTCTAA  244

seq1  GATTGACAGGCCATCTCAAACACCAGTTCCCACAGTGATGGATCCATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACAGGCCATCTCAAACACCAGTTCCCACAGTGATGGATCCATAGG  294

seq1  TTCTGAATTATAACAACTTTACAAATCAGCACATGCTATTTGTCCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTATAACAACTTTACAAATCAGCACATGCTATTTGTCCCTTCT  344

seq1  CTAAATCAGATAGGTTTATGAGGTTTCTCTCATAAAGTTTTCTATAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGATAGGTTTATGAGGTTTCTCTCATAAAGTTTTCTATAACAT  394

seq1  GAAACAAAACAAACAATAAGATAGAATTTAAAAATTAAAATTGTCTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAACAAACAATAAGATAGAATTTAAAAATTAAAATTGTCTCTTG  444

seq1  AAAATCTTTATGTAGGAAATATTAGTGAGTGGTACAAAATGCATTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTATGTAGGAAATATTAGTGAGTGGTACAAAATGCATTCCAAA  494

seq1  TTGGTTGTTTTCCCTCTAGCATTCTGGCAAGTTACTCACAAGCATTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTTTCCCTCTAGCATTCTGGCAAGTTACTCACAAGCATTTTTC  544

seq1  TAACTATTGAATATAGATCATTTTTTAAAATGATATTTCCAAATACCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTGAATATAGATCATTTTTTAAAATGATATTTCCAAATACCAGT  594

seq1  GCTGAGGAAGAAAATAATGCATCCACACAATCATAGTGACTAATTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAAGAAAATAATGCATCCACACAATCATAGTGACTAATTAAAAC  644

seq1  ATCCAAATTCATACTAGTCACTGATATACTTATAAATTTATAAATGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATTCATACTAGTCACTGATATACTTATAAATTTATAAATGCTCT  694

seq1  TCACAAGTAAGATATGGTCTAACCTCTGAAATGTTTACCAATAGGTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTAAGATATGGTCTAACCTCTGAAATGTTTACCAATAGGTCTAA  744

seq1  TCTTTTCAACAATGAAGCAGGGATCTGTTTTGTTTACTTAGAGGGAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAACAATGAAGCAGGGATCTGTTTTGTTTACTTAGAGGGAACTT  794

seq1  TTGAGATTTTTTTTAGTACTGTTTTTACTCTATTCACTGTTACAAATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTTTTTTTAGTACTGTTTTTACTCTATTCACTGTTACAAATTGA  844

seq1  ACTTTATTTGTGAAATTCCCTTGAAGTGTATGGTTTTAATTTTTGTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTGTGAAATTCCCTTGAAGTGTATGGTTTTAATTTTTGTTTCA  894

seq1  TTAATTGAAAAAGTAGATGTCACGAACAAAAGGAAGGAATGAAGGAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAAAAAGTAGATGTCACGAACAAAAGGAAGGAATGAAGGAGTGA  944

seq1  AGGAAAAACAGAATGAAGGAAGAAAGGAAATGAGTTTGGTTTTATTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAACAGAATGAAGGAAGAAAGGAAATGAGTTTGGTTTTATTTTTC  994

seq1  TTGTTAAATGGCAGCTGATGTCCATATGTAACCCTCATAGAATCACAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATGGCAGCTGATGTCCATATGTAACCCTCATAGAATCACAATT  1044

seq1  TGAGGCCATCATGCCATCAAATATATTCCAATATTTCTGAACTCTGACCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCATCATGCCATCAAATATATTCCAATATTTCTGAACTCTGACCC  1094

seq1  TGACTAAGGTATGAATTC  1118
      ||||||||||||||||||
seq2  TGACTAAGGTATGAATTC  1112