BAC Information

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BAC

Clone NameB6Ng01-129M02
Chromosome7 (Build37)
Map Location 6,298,826 - 6,495,836
singlet/doubletdoublet
Overlap geneLOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467
Downstream geneOlfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129M02.bB6Ng01-129M02.g
ACCDH931257DH931258
length846867
definitionDH931257|Mus musculus domesticus DNA, BAC clone: B6Ng01-129M02, 5' end.DH931258|Mus musculus domesticus DNA, BAC clone: B6Ng01-129M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,298,826 - 6,299,666)(6,495,288 - 6,495,836)
sequence
gaattcaagtcctctgcaagagtagccatttactcttaactactgagcaa
gtactcttaaccacttgtcccttgaaatcatgtttgattattggctgtca
tattctattattgttatggctatgccaaaaaatgattctatatgtaacta
cttgagaaatcagtgtttttgtggggtttttttccttcagcagatatgat
tgtgtgtatggctttgcacactactgtgtctgttccatctaattgtgcga
ttgtctcctgcaacttcaccctatttctccactcaaagtaagtcgagttt
ggcctgtggagttctttgtgagtttggaagttggagaaacagttggcttg
acttgagagtggttccatttgatgcctgggagatgaaatggctgagtcct
gtgaatgctgggattcctttcgagtctgcggttatgcacattatgcaagc
tctccttactctccgagtgaggagagctttccttgtctttagagtaccgt
gtatgtctccatcgctggaacaggtctgaggacctctgtctgagctttgc
accacctgcagtatttcagggaagtgggagagaaagggcctctcatttct
ataccatttctgcagcagctaaattggcctgctggtgatgggtttgaccc
tagctctctgtaatgggcagttagagaaatacaggcggggacatcaccct
ggcattcagggagcttataacctccatgtttgcttttcctccctcagctc
tgatacctaagaactctgtcctttcccaagagagaaacctggaggaaaga
tccatcaccttgaactcctgaaaagtcatgctgctcgtgagtttta
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaac
caataaataaataaataaataaataaataaataaataaataaataatctt
ttaaaaaagatactaaatgtcacttctggcttccatgaacacatgttcac
ctgcacccatccacccacatgaagtgtgtgcacacagaaataagcgggaa
gcaaatctttccaacaagcctcgagaacatcatgttaagagaaataagca
agacactaaaatttgatgtttctgtgaataagttttttagatatgagatt
acagtaacaaagtatgatagagtggactggagtgatgtctgtgaaaaggt
acaagattttggttataaaatttttaaagttctgggcttctaatgcacag
cacagcagctatatttcattaaattatggtctgtatttgatatttgccca
gaacatagatcccaagtacatttaccccaacctcaatttaacaatggaac
aaaaccagataaattgcattagagaaacaacatcttataatatatctgaa
caatgttcttcagactggtcaacatcactcaacccaaaagcccagaggag
cctgaggagatgtgacacctaaatgacaggtgtcatgagatgccagagca
gaagcatgtgaggtgagatcaaagaaaatctgcataaatgtcattactga
gttactgattgtatttaatgtgctgtgtacgggtgggatgtcatacgctc
aggtgtttatgggaatagtctatactatcttcacactcctctgtaacctg
aaatttctcttaaagcaagttttgaactctagaaaggggttagtaggata
cagtgctgtgagcgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6298826_6299666
seq2: B6Ng01-129M02.b_45_890

seq1  GAATTCAAGTCCTCTGCAAGAGTAGCCA-GTACTCTTAACTACTGAGCAA  49
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCAAGTCCTCTGCAAGAGTAGCCATTTACTCTTAACTACTGAGCAA  50

seq1  GTACTCTTAACCACTTGTCCCTTGAAATCATGTTTGATTATTGGCTGTCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTAACCACTTGTCCCTTGAAATCATGTTTGATTATTGGCTGTCA  100

seq1  TATTCTATTATTGTTATGGCTATGCCAAAAAATGATTCTATATGTAACTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTATTGTTATGGCTATGCCAAAAAATGATTCTATATGTAACTA  150

seq1  CTTGAGAAATCAGTGTTTTTGTGGGGTTTTTTTCCTTCAGCAGATATGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAATCAGTGTTTTTGTGGGGTTTTTTTCCTTCAGCAGATATGAT  200

seq1  TGTGTGTATGGCTTTGCACACTACTGTGTCTGTTCCATCTAATTGTGCGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGGCTTTGCACACTACTGTGTCTGTTCCATCTAATTGTGCGA  250

seq1  TTGTCTCCTGCAACTTCACCCTATTTCTCCACTCAAAGTAAGTCGAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCTGCAACTTCACCCTATTTCTCCACTCAAAGTAAGTCGAGTTT  300

seq1  GGCCTGTGGAGTTCTTTGTGAGTTTGGAAGTTGGAGAAACAGTTGGCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGAGTTCTTTGTGAGTTTGGAAGTTGGAGAAACAGTTGGCTTG  350

seq1  ACTTGAGAGTGGTTCCATTTGATGCCTGGGAGATGAAATGGCTGAGTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGTGGTTCCATTTGATGCCTGGGAGATGAAATGGCTGAGTCCT  400

seq1  GTGAATGCTGGGATTCCTTTCGAGTCTGCGGTTATGCACATTATGCAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGCTGGGATTCCTTTCGAGTCTGCGGTTATGCACATTATGCAAGC  450

seq1  TCTCCTTACTCTCCGAGTGAGGAGAGCTTTCCTTGTCTTTAGAGTACCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTACTCTCCGAGTGAGGAGAGCTTTCCTTGTCTTTAGAGTACCGT  500

seq1  GTATGTCTCCATCGCTGGAACAGGTCTGAGGACCTCTGTCTGAGCTTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTCCATCGCTGGAACAGGTCTGAGGACCTCTGTCTGAGCTTTGC  550

seq1  ACCACCTGCAGTATTTCAGGGAAGTGGGAGAGAAAGGGCCTCTCA-TTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCACCTGCAGTATTTCAGGGAAGTGGGAGAGAAAGGGCCTCTCATTTCT  600

seq1  ATACCATTTCTGCAGCAGCTAAATTGGCCTGCTGGTGATGGGTTTGA-CC  647
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATACCATTTCTGCAGCAGCTAAATTGGCCTGCTGGTGATGGGTTTGACCC  650

seq1  TAGCTCTCTGTAATGGGCAGTTAGAGAAATACAGGCGGGGACATCACCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCTGTAATGGGCAGTTAGAGAAATACAGGCGGGGACATCACCCT  700

seq1  GGCATTCAGGGAGCTTAGAACCTCCATGTTTGCTTTTCCT-CCTCAGCTC  746
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  GGCATTCAGGGAGCTTATAACCTCCATGTTTGCTTTTCCTCCCTCAGCTC  750

seq1  TGATACCTAAGAACTCTGTCCTTCCCCAAGAGAGAAACCTGGAGG-AAGA  795
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TGATACCTAAGAACTCTGTCCTTTCCCAAGAGAGAAACCTGGAGGAAAGA  800

seq1  TCCATCAGCCTTGAACTCCTG-AAAGTCATGCTGCTCGTGAGTTTTA  841
      ||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TCCATCA-CCTTGAACTCCTGAAAAGTCATGCTGCTCGTGAGTTTTA  846

seq1: chr7_6495288_6495836
seq2: B6Ng01-129M02.g_389_935 (reverse)

seq1  CCCGCTCACAGCACCTGTATCCTACTACCCCCTTTCTAGAGTTCAAAACT  50
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  CCCGCTCACAGCA-CTGTATCCTACTAACCCCTTTCTAGAGTTCAAAACT  49

seq1  TGCTTTAAGAGAAATTTCAGGTTAACAGAGGAGTGTGAAGATAGTATAGA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTTTAAGAGAAATTTCAGGTT-ACAGAGGAGTGTGAAGATAGTATAGA  98

seq1  CTATTCCCATAAACACCTGAGCGTATGACATCCCACCCGTACACAGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCATAAACACCTGAGCGTATGACATCCCACCCGTACACAGCACA  148

seq1  TTAAATACAATCAGTAACTCAGTAATGACATTTATGCAGATTTTCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACAATCAGTAACTCAGTAATGACATTTATGCAGATTTTCTTTGA  198

seq1  TCTCACCTCACATGCTTCTGCTCTGGCATCTCATGACACCTGTCATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTCACATGCTTCTGCTCTGGCATCTCATGACACCTGTCATTTAG  248

seq1  GTGTCACATCTCCTCAGGCTCCTCTGGGCTTTTGGGTTGAGTGATGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACATCTCCTCAGGCTCCTCTGGGCTTTTGGGTTGAGTGATGTTGA  298

seq1  CCAGTCTGAAGAACATTGTTCAGATATATTATAAGATGTTGTTTCTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGAAGAACATTGTTCAGATATATTATAAGATGTTGTTTCTCTAA  348

seq1  TGCAATTTATCTGGTTTTGTTCCATTGTTAAATTGAGGTTGGGGTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTATCTGGTTTTGTTCCATTGTTAAATTGAGGTTGGGGTAAATG  398

seq1  TACTTGGGATCTATGTTCTGGGCAAATATCAAATACAGACCATAATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGATCTATGTTCTGGGCAAATATCAAATACAGACCATAATTTAA  448

seq1  TGAAATATAGCTGCTGTGCTGTGCATTAGAAGCCCAGAACTTTAAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATAGCTGCTGTGCTGTGCATTAGAAGCCCAGAACTTTAAAAATT  498

seq1  TTATAACCAAAATCTTGTACCTTTTCACAGACATCACTCCAGTCCACTC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACCAAAATCTTGTACCTTTTCACAGACATCACTCCAGTCCACTC  547