BAC Information

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BAC

Clone NameB6Ng01-130K17
Chromosome7 (Build37)
Map Location 27,160,471 - 27,322,745
singlet/doubletdoublet
Overlap geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a
Upstream geneLipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4
Downstream geneV1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130K17.bB6Ng01-130K17.g
ACCDH931926DH931927
length846322
definitionDH931926|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K17, 5' end.DH931927|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,160,471 - 27,161,318)(27,322,424 - 27,322,745)
sequence
gaattcacatgcctcctcagtttttcatgtttttcctatactgaatttct
actttgcatgaaaaaaaacctgaaatagtctggtgagatagctaaacact
cttgctaccaagcctgaggaccatccggggaaccttgctataaggttgta
gtccctcaggaatgggtggctttcagagcttggcacctggctggccttgt
gtgcccttgtctaaaatgtgacattgtacagagctctctgcaagggtgta
taactcagcacatccatcctactctggcttcccacctagatgataattag
gtcctgtagtataatcaatcagcccatattgctcctttgatggcatgacc
aattagtgctttccacctgtacccctaaaaatcccttctatgccctatca
ctgaaacaataaactagacttgtcttgttccagcagtctctgcatatcat
gctgtccatattcatggccatctggactgtgatctccacctctggcacct
ttctcctctcaggctggtggccacaaggacctgagttaattcccatagga
tggaagcaaataaccaaatcccacaaaattgtcttctgtccttcatatgt
ttgcaagttctctctctctctctctctctctctctctctctctctctctc
tcgatagaaacattttcaaatatttttgaaaaactagatcaccacagatg
taggcaaaattgactgttgatttacctgacaacttatttgtagaacagga
agtcgactaacatttccacccataccagaaatttatcatttatgataaat
ccttttctagggatccattaagtttattcattataccttttgtttt
caaatttcacacaattgcagaaatcatctgcagctggcaaaaccatgctt
ctgctagagcatgaggcaaatcatggtcagctcttgcagacagctaaaag
tagttctacatacctacaaatgagaataaagtgaaatcacagtcttataa
tatttctgtgtgttttttttaaaagaaacccagaattctagaattcacaa
aaatgccactacatcttatcctccagtatccacctcccaagtgttgggat
cacaattgtgatctaacattgctgattaaaagaaaaatcaatcacaagtg
tggagggagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27160471_27161318
seq2: B6Ng01-130K17.b_47_892

seq1  GAATTCACATGCCTCCTCAGTTTTTCATGTTTTTCCTATACTGAATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCCTCCTCAGTTTTTCATGTTTTTCCTATACTGAATTTCT  50

seq1  ACTTTGCATGAAAAAAAACCTGAAATAGTCTGGTGAGATAGCTAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATGAAAAAAAACCTGAAATAGTCTGGTGAGATAGCTAAACACT  100

seq1  CTTGCTACCAAGCCTGAGGACCATCCGGGGAACCTTGCTATAAGGTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACCAAGCCTGAGGACCATCCGGGGAACCTTGCTATAAGGTTGTA  150

seq1  GTCCCTCAGGAATGGGTGGCTTTCAGAGCTTGGCACCTGGCTGGCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAGGAATGGGTGGCTTTCAGAGCTTGGCACCTGGCTGGCCTTGT  200

seq1  GTGCCCTTGTCTAAAATGTGACATTGTACAGAGCTCTCTGCAAGGGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTGTCTAAAATGTGACATTGTACAGAGCTCTCTGCAAGGGTGTA  250

seq1  TAACTCAGCACATCCATCCTACTCTGGCTTCCCACCTAGATGATAATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGCACATCCATCCTACTCTGGCTTCCCACCTAGATGATAATTAG  300

seq1  GTCCTGTAGTATAATCAATCAGCCCATATTGCTCCTTTGATGGCATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAGTATAATCAATCAGCCCATATTGCTCCTTTGATGGCATGACC  350

seq1  AATTAGTGCTTTCCACCTGTACCCCTAAAAATCCCTTCTATGCCCTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGCTTTCCACCTGTACCCCTAAAAATCCCTTCTATGCCCTATCA  400

seq1  CTGAAACAATAAACTAGACTTGTCTTGTTCCAGCAGTCTCTGCATATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAATAAACTAGACTTGTCTTGTTCCAGCAGTCTCTGCATATCAT  450

seq1  GCTGTCCATATTCATGGCCATCTGGACTGTGATCTCCACCTCTGGCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCATATTCATGGCCATCTGGACTGTGATCTCCACCTCTGGCACCT  500

seq1  TTCTCCTCTCAGGCTGGTGGCCACAAGGACCTGAGTTAATTCCCATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTCAGGCTGGTGGCCACAAGGACCTGAGTTAATTCCCATAGGA  550

seq1  TGGAAGCAAATAACCAAATCCCACAAAATTGTCTTCTGTCCTTCATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCAAATAACCAAATCCCACAAAATTGTCTTCTGTCCTTCATATGT  600

seq1  TTGCAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650

seq1  TCGATAGAAACATTTTCAAATATTTTTGAAAAACTAGATCACCACAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAGAAACATTTTCAAATATTTTTGAAAAACTAGATCACCACAGATG  700

seq1  TAGGCAAAATTGACTGTTGATTTACCTGACAACTTATTTGTAGAACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAATTGACTGTTGATTTACCTGACAACTTATTTGTAGAACAGGA  750

seq1  AGTCGACTAACATTTCCACCCATACCAGAAATTTATCATTTATGATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGACTAACATTTCCACCCATACCAGAAATTTATCATTTATGATAAAT  800

seq1  CCTTTTCTAGTGACTCCATTAAGTTTTTTCATTATACCCTTTTGTTGT  848
      |||||||||| || |||||||||||| ||||||||| ||||||||| |
seq2  CCTTTTCTAGGGA-TCCATTAAGTTTATTCATTATA-CCTTTTGTTTT  846

seq1: chr7_27322424_27322745
seq2: B6Ng01-130K17.g_75_396 (reverse)

seq1  CCTCCCTCCCTCCCTCCCTCCACACTTGTGATTGATTTTTCTTTTAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTCCCTCCACACTTGTGATTGATTTTTCTTTTAATCA  50

seq1  GCAATGTTAGATCACAATTGTGATCCCAACACTTGGGAGGTGGATACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTAGATCACAATTGTGATCCCAACACTTGGGAGGTGGATACTGG  100

seq1  AGGATAAGATGTAGTGGCATTTTTGTGAATTCTAGAATTCTGGGTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAGATGTAGTGGCATTTTTGTGAATTCTAGAATTCTGGGTTTCTT  150

seq1  TTAAAAAAAACACACAGAAATATTATAAGACTGTGATTTCACTTTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAACACACAGAAATATTATAAGACTGTGATTTCACTTTATTCT  200

seq1  CATTTGTAGGTATGTAGAACTACTTTTAGCTGTCTGCAAGAGCTGACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAGGTATGTAGAACTACTTTTAGCTGTCTGCAAGAGCTGACCAT  250

seq1  GATTTGCCTCATGCTCTAGCAGAAGCATGGTTTTGCCAGCTGCAGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTCATGCTCTAGCAGAAGCATGGTTTTGCCAGCTGCAGATGAT  300

seq1  TTCTGCAATTGTGTGAAATTTG  322
      ||||||||||||||||||||||
seq2  TTCTGCAATTGTGTGAAATTTG  322