BAC Information

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BAC

Clone NameB6Ng01-131M16
Chromosome7 (Build37)4 (Build37)
Map Location 148,626,171 - 148,627,34544,312,159 - 44,312,237
singlet/doubletsingletsinglet
Overlap geneLrdd
Upstream geneOlfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22
Downstream geneRplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131M16.bB6Ng01-131M16.g
ACCDH932760DH932761
length1,156418
definitionDH932760|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M16, 5' end.DH932761|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,626,171 - 148,627,345)(44,312,159 - 44,312,237)
sequence
gaattccagtgccacctgagtggtgatatcatcccaggtggttgtcaggg
gtgttcggtagagcagatgcaggtgggagcggtctagactgaagcctgga
tggaaaatgacagaaggctgaagcccctctgaatgctattcccccctcta
agcacccacctttagtcctgtggcgtgcagcttcacctgtaacgccagga
ggcaggggcaactgcacagtgacaggttgtaggaagctgggggggccgct
ctgtgaaaggcacagcagagggcttactgatgcctctgattcttccagaa
gggttctcagctctagtccagccatatgcactacctagacagagaaccat
ttcagtgccctcctgtctgctgaggcaccacctcccgccacccttggtac
taccctgtcaatacctgcatggagacttgccgaggctcttctgtaacccc
agggggaaaagtgactctgaccccaggatgacctgaggagcagagaagtg
ctccctctggtggcaaaaggcaagtgttggatactgggcgtaaaacgacc
aggaaccaggagaagtggggcacctggcagcgagcccagagcctctggaa
cacgggggaagagagagtcagggcaggagacagtgggcagggtgggtggt
gtcagggcaagctgctcctttcccctcactcccaaaggcctaggcagctg
tcaccttgggtgcctcttcctccagttgggtctctaggtcattccaggtg
tttgttactccgtgtcctcacaactacctcacgacagcgacggactcgtg
gagggacaaagagcagccataagctcacatcctgtagccacaatagtgtg
agacggggccaggactaggcaatacctgctccctacccatcctggacata
ctttgctggaaagccaccccatggggctgcagctccaggacactactaag
caagagttcatgaggtccagatagaccaggcctggctcgggcaacagagt
cgatagtgatggtgacaggcgggtggtgcttctgcttgaactgtagcgac
ccacagtcagggtctcagacagccatggggattcccaggaagctgattaa
gaaaagggtaaaagggtctgagagacagtattctcagtgtgcctggagag
agacga
caggacagccagggctacacagagaaaccctgcttccaaaaacaaacaaa
caaaactggggcatccatagtcaaaaaatcaggtatcttacaagggcctg
atttcagggtgtaaggtaacagggcagaatggtgtcatggtagatagatc
taggtatggacccataactttaatccaagcactagggaggtagaacaagc
aatctctatgtaaagctaacctggtctacatagagtcccaggccagtagg
ggttacaaagtgtaacctatgccaaaaaattaattttagataagtgtggt
ggtgcacacctttaatcccagcactcaagaggcatcagacctgtgagttt
caggctgcctgatctatatagcaagctccagaacatccagggctaattaa
agaaaccctgtctcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148626171_148627345
seq2: B6Ng01-131M16.b_45_1200

seq1  GAATTCCAGTGCCACCTGAGTGGTGATATCATCCCAGGTGGTTGTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCCACCTGAGTGGTGATATCATCCCAGGTGGTTGTCAGGG  50

seq1  GTGTTCGGTAGAGCAGATGCAGGTGGGAGCGGTCTAGACTGAAGCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGGTAGAGCAGATGCAGGTGGGAGCGGTCTAGACTGAAGCCTGGA  100

seq1  TGGAAAATGACAGAAGGCTGAAGCCCCTCTGAATGCTATTCCCCCCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGACAGAAGGCTGAAGCCCCTCTGAATGCTATTCCCCCCTCTA  150

seq1  AGCACCCACCTTTAGTCCTGTGGCGTGCAGCTTCACCTGTAACGCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACCTTTAGTCCTGTGGCGTGCAGCTTCACCTGTAACGCCAGGA  200

seq1  GGCAGGGGCAACTGCACAGTGACAGGTTGTAGGAAGCTGGGGGGGCCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGCAACTGCACAGTGACAGGTTGTAGGAAGCTGGGGGGGCCGCT  250

seq1  CTGTGAAAGGCACAGCAGAGGGCTTACTGATGCCTCTGATTCTTCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGGCACAGCAGAGGGCTTACTGATGCCTCTGATTCTTCCAGAA  300

seq1  GGGTTCTCAGCTCTAGTCCAGCCATATGCACTACCTAGACAGAGAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTCAGCTCTAGTCCAGCCATATGCACTACCTAGACAGAGAACCAT  350

seq1  TTCAGTGCCCTCCTGTCTGCTGAGGCACCACCTCCCGCCACCCTTGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCCTCCTGTCTGCTGAGGCACCACCTCCCGCCACCCTTGGTAC  400

seq1  TACCCTGTCAATACCTGCATGGAGACTTGCCGAGGCTCTTCTGTAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTCAATACCTGCATGGAGACTTGCCGAGGCTCTTCTGTAACCCC  450

seq1  AGGGGGAAAAGTGACTCTGACCCCAGGATGACCTGAGGAGCAGAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAAAGTGACTCTGACCCCAGGATGACCTGAGGAGCAGAGAAGTG  500

seq1  CTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCGTAAAACGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGGTGGCAAAAGGCAAGTGTTGGATACTGGGCGTAAAACGACC  550

seq1  AGGAACCAGGAGAAGTGGGGCACCTGGCAGCGAGCCCAGAGCCTCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAGGAGAAGTGGGGCACCTGGCAGCGAGCCCAGAGCCTCTGGAA  600

seq1  CACGGGGGAAGAGAGAGTCAGGGCAGGAGACAGTGGGCAGGGTGGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGGAAGAGAGAGTCAGGGCAGGAGACAGTGGGCAGGGTGGGTGGT  650

seq1  GTCAGGGCAAGCTGCTCCTTTCCCCTCACTCCCAAAGGCCTAGGCAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGCAAGCTGCTCCTTTCCCCTCACTCCCAAAGGCCTAGGCAGCTG  700

seq1  TCACCTTGGGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGGGTGCCTCTTCCTCCAGTTGGGTCTCTAGGTCATTCCAGGTG  750

seq1  -TTGTTACTCCGTGTCCTCACAACTACCTCACGACAGCGACGGACTCGTG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACTCCGTGTCCTCACAACTACCTCACGACAGCGACGGACTCGTG  800

seq1  GAGGGACAAAGAGCAGCCATAAGCTCACATCCTGTAGGCCACAATAGTGT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGGACAAAGAGCAGCCATAAGCTCACATCCTGTA-GCCACAATAGTGT  849

seq1  GAGACGGGGCCAGGACTAGGCAATACCTGCTCCCTACCCATCCTGGACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGGGCCAGGACTAGGCAATACCTGCTCCCTACCCATCCTGGACAT  899

seq1  AC-TTGCTGGAAAGCCACCCCATGGGGCTGCAGCTCCAGGACACTACTAA  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGGAAAGCCACCCCATGGGGCTGCAGCTCCAGGACACTACTAA  949

seq1  GCAGGAAGTCATGAGGTCCCAGAGAGACCAGGCCTGGCTCGGGCAACCAG  998
      ||| ||  ||||||||| ||||| |||||||||||||||||||||| |||
seq2  GCAAGAGTTCATGAGGT-CCAGATAGACCAGGCCTGGCTCGGGCAA-CAG  997

seq1  AGTCGATAGTGGATGGTGACAGGCGTGGTGGTGGCTCCTGCTGGAAACTG  1048
      |||||||||| |||||||||||||| |||||| ||| ||||| | |||||
seq2  AGTCGATAGT-GATGGTGACAGGCG-GGTGGT-GCTTCTGCTTG-AACTG  1043

seq1  TAGGCGGACACCACAGGCCAGGGTCACAGAACAGCCATGGGGAGTCACAA  1098
      |||   ||| ||||| | ||||||| ||| ||||||||||||| || | |
seq2  TAG--CGAC-CCACA-GTCAGGGTCTCAG-ACAGCCATGGGGATTC-CCA  1087

seq1  GGAAGCTGAGTAAGAAGAGAGGTAAGAGGG-CTGAGAGACAAGGTA-CCC  1146
      ||||||||| |||||| || ||||| |||| ||||||||||  |||  | 
seq2  GGAAGCTGATTAAGAAAAG-GGTAAAAGGGTCTGAGAGACA--GTATTCT  1134

seq1  CAGTGTGGCCTGGGAGGCAGGGGAGACGA  1175
      |||||| ||||||       | |||||||
seq2  CAGTGT-GCCTGG------AGAGAGACGA  1156

seq1: chr4_44312159_44312237
seq2: B6Ng01-131M16.g_73_493 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TTTTGAGACAGGGTTTCTTTAATTAGCCCTGGATGTTCTGGAGCTTGCTA  50

seq1  --------------------------------------------------  0
                                                        
seq2  TATAGATCAGGCAGCCTGAAACTCACAGGTCTGATGCCTCTTGAGTGCTG  100

seq1  --------------------------------------------------  0
                                                        
seq2  GGATTAAAGGTGTGCACCACCACACTTATCTAAAATTAATTTTTTGGCAT  150

seq1  --------------------------------------------------  0
                                                        
seq2  AGGTTACACTTTGTAACCCCTACTGGCCTGGGACTCTATGTAGACCAGGT  200

seq1  --------------------------------------------------  0
                                                        
seq2  TAGCTTTACATAGAGATTGCTTGTTCTACCTCCCTAGTGCTTGGATTAAA  250

seq1  --------------------------------------------------  0
                                                        
seq2  GTTATGGGTCCATACCTAGATCTATCTACCATGACACCATTCTGCCCTGT  300

seq1  ----------------------------------------TTTTGAGAC-  9
                                              ||||  ||| 
seq2  TACCTTACACCCTGAAATCAGGCCCTTGTAAGATACCTGATTTTTTGACT  350

seq1  AGGGTTTC----TTTTTGTTTGTTTGTTTTTTTTCGAGACAGGGTTTCTC  55
      | || | |     |||||||||||||   ||||| ||  |||||||||||
seq2  ATGGATGCCCCAGTTTTGTTTGTTTG---TTTTTGGAAGCAGGGTTTCTC  397

seq1  TGTGTAGCCCTGGCTGTCCTGGAA  79
      ||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTGGAA  421