BAC Information

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BAC

Clone NameB6Ng01-131O03
Chromosome7 (Build37)
Map Location 8,797,205 - 8,995,285
singlet/doubletdoublet
Overlap geneLOC100041998, LOC100042009, LOC100042754, V2r14
Upstream geneVmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989
Downstream geneEG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131O03.bB6Ng01-131O03.g
ACCDH932828DH932829
length1,1391,131
definitionDH932828|Mus musculus domesticus DNA, BAC clone: B6Ng01-131O03, 5' end.DH932829|Mus musculus domesticus DNA, BAC clone: B6Ng01-131O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,797,205 - 8,798,361)(8,994,073 - 8,995,285)
sequence
gaattccttggacaaaattaagttatatgtcaatgggaattctacataaa
aaccctgaaatagactgtccttttcaaagccagccaaaacacaaaaatct
ggtagtcaaacactgttggtatcttcttttatcactgattaaccataaca
taatttccaaatacaaagaacagtaggaaatttttgtgactcacaaatgc
tctgttcctctagctggaatttaatcttatgtaaactgaatgtcctcagg
ccttgggagcataagacttataatacaatcacattgacatttgatcccaa
atgagaccaactcattgcttccacttgactattccatctattgtagacag
gatttttttaacgtttctgggatgagaccaattctctattttgattgcta
aaatattagagctaatattcctcaaaaactgctgatatccctggattgct
cattcttttccctactttggatttttgtcaacttcctagcattcacacag
aaaataattatttttggagttgtgcttcttataacatatttaggaagcac
tacttgaccataaatgagagttatatacccctcatatgtgtccatgtcgc
acattgcatggacatataagcatcatttattgcagtatactttagcattt
tatgtggagaaacagtaagtaaataacaagtttatatatagagaaattta
ttatttttacctattgcctgatgtatagtagcgctttgaaaaaaattgca
attatattcctaacattcaactggtatactttttaaaggaggctatagac
aaaaccaaacctagttttattatcagggctaattttcaagttggatatcc
taactctttctttatttctcacatttaaaacatcattgcatgacctacta
caggcaatgtaggaatggggaattatcttttgacatcattctttctccag
acattctgagctcttattctgagctttctctacctgaagcatcgcaaagt
atttatcagtcgtcttaagtgtgctttatgctgagtttacttccctatga
ctttttcctcaagtcacattaaagtacagtgtgctctaagatggtgatct
tgagtttgttacaacttctattattgtcagcaatgaata
gaattccaggtcagccaggactatacaatgaaaccctgtctcaaaaaaaa
aaaaaaaatcaaaacaaaacaaaaacccaaaacaaaaaccaaaaaacaaa
acaaaaggcatcaatgttttttaagagccaaacgataatcagtttatatg
ctcttataaacatgttagtttatagtattatattcagactattgttatgc
ttattgaaaattgttaacctaattttacatcatgaatagagctataaaat
actaatttttataactttcttatttaaacatgaatcttaatgtgttcatt
tgctgacaattaacatagaagtttgtaacaaaactcaagatcaccattct
ttagagcaccactctactataatgtgaccttgaagggaaaaagtccaata
gggaagtaaaacttaagcataaagcaccacttaagacgacctgataaaaa
ctttgtgatgattcaggtagagaaacctcagaataagagctcagaatgtc
tggagaaagaatgatgtcaaaagataattccccattcctacattgcctgg
agtaggtcatgcaatgatgttttaaatgtgcaaaataaagaaagagttag
gatataaaacttgaaaattaatcctgataataaaactaggtttgtttttg
cctttagccttctttaaaaagtataccagttgaatgttaggaatataaat
gcaatttttttttttttacaaaagtcctactatatatcaggcacaaaggt
aaaaataataaatttctctatattaaacttgctatttacttactgtttct
ccatataagatattaaagtatactctgataaatgatgcctatatgtccat
gcagtgtgacacatggacacatattaggggtatctaactctcatttatgg
tcaagtagtacttcctaaatatgttataagaagcacaactccaaaaataa
ttattttctgagtgaatgataggaagttgacaaaaatccaaagtagggaa
gaatgagcaatcacgagtatcagcagttttggagaaattaaacttttaat
tattagcacaaaaacggagatggttcatctagaacctcaaaatcttgtct
acattaaagaggaacccaaaatcctaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8797205_8798361
seq2: B6Ng01-131O03.b_48_1186

seq1  GAATTCCTTGGACAAAATTAAGTTATATGTCAATGGGAATTCTACATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGACAAAATTAAGTTATATGTCAATGGGAATTCTACATAAA  50

seq1  AACCCTGAAATAGACTGTCCTTTTCAAAGCCAGCCAAAACACAAAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAAATAGACTGTCCTTTTCAAAGCCAGCCAAAACACAAAAATCT  100

seq1  GGTAGTCAAACACTGTTGGTATCTTCTTTTATCACTGATTAACCATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCAAACACTGTTGGTATCTTCTTTTATCACTGATTAACCATAACA  150

seq1  TAATTTCCAAATACAAAGAACAGTAGGAAATTTTTGTGACTCACAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCAAATACAAAGAACAGTAGGAAATTTTTGTGACTCACAAATGC  200

seq1  TCTGTTCCTCTAGCTGGAATTTAATCTTATGTAAACTGAATGTCCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTCTAGCTGGAATTTAATCTTATGTAAACTGAATGTCCTCAGG  250

seq1  CCTTGGGAGCATAAGACTTATAATACAATCACATTGACATTTGATCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGCATAAGACTTATAATACAATCACATTGACATTTGATCCCAA  300

seq1  ATGAGACCAACTCATTGCTTCCACTTGACTATTCCATCTATTGTAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCAACTCATTGCTTCCACTTGACTATTCCATCTATTGTAGACAG  350

seq1  GATTTTTTTAACGTTTCTGGGATGAGACCAATTCTCTATTTTGATTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTAACGTTTCTGGGATGAGACCAATTCTCTATTTTGATTGCTA  400

seq1  AAATATTAGAGCTAATATTCCTCAAAAACTGCTGATATCCCTGGATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGAGCTAATATTCCTCAAAAACTGCTGATATCCCTGGATTGCT  450

seq1  CATTCTTTTCCCTACTTTGGATTTTTGTCAACTTCCTAGCATTCACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTCCCTACTTTGGATTTTTGTCAACTTCCTAGCATTCACACAG  500

seq1  AAAATAATTATTTTTGGAGTTGTGCTTCTTATAACATATTTAGGAAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTATTTTTGGAGTTGTGCTTCTTATAACATATTTAGGAAGCAC  550

seq1  TACTTGACCATAAATGAGAGTTATATACCCCTCATATGTGTCCATGTCGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACCATAAATGAGAGTTATATACCCCTCATATGTGTCCATGTCGC  600

seq1  ACATTGCATGGACATATAAGCATCATTTATTGCAGTATACTTTAGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCATGGACATATAAGCATCATTTATTGCAGTATACTTTAGCATTT  650

seq1  TATGTGGAGAAACAGTAAGTAAATAACAAGTTTATATATAGAGAAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAGAAACAGTAAGTAAATAACAAGTTTATATATAGAGAAATTTA  700

seq1  TTATTTTTACCTATTGCCTGATGTATAGTAGCGCTTTGAAAAAAATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTACCTATTGCCTGATGTATAGTAGCGCTTTGAAAAAAATTGCA  750

seq1  ATTATATTCCTAACATTCAACTGGTATACTTTTTAAAGGAGGCTATAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTCCTAACATTCAACTGGTATACTTTTTAAAGGAGGCTATAGAC  800

seq1  AAAACCAAACCTAGTTTTATTATCAGGGCTAATTTTCAAGTTGGATATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACCTAGTTTTATTATCAGGGCTAATTTTCAAGTTGGATATCC  850

seq1  TAACTCTTTCTTTATTTCTCACATTTAAAACATCATTGCATGACCTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCTTTATTTCTCACATTTAAAACATCATTGCATGACCTACTA  900

seq1  CAGGCAATGTAGGAATGGGGAATTATCTTTTGACATCATTCTTTCTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATGTAGGAATGGGGAATTATCTTTTGACATCATTCTTTCTCCAG  950

seq1  ACATTCTGAGCTCTTATTCTGAGCTTTCTCTACCTGAAGCATCGCAAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGAGCTCTTATTCTGAGCTTTCTCTACCTGAAGCATCGCAAAGT  1000

seq1  ATTTATCAGGTCGTCTTAAGTGGTGCTTTATGCTTGAGTTTTACTTCCCT  1050
      |||||||| |||||||||||| ||||||||||| |||| |||||||||||
seq2  ATTTATCA-GTCGTCTTAAGT-GTGCTTTATGC-TGAG-TTTACTTCCCT  1046

seq1  ATTGGACTTTTTCCCTTCAAGGTCACATTATAGTACAGTGGTGCTCTAAA  1100
      ||  ||||||||||  |||| ||||||||| |||||||| ||||||||| 
seq2  AT--GACTTTTTCC--TCAA-GTCACATTAAAGTACAGT-GTGCTCTAA-  1089

seq1  GAATGGTGATCTTGAGTTTTGTTACAAACTTCTATATTAATTGTCAGCAA  1150
        |||||||||||||| |||||||| ||||||||   | ||||||||| |
seq2  -GATGGTGATCTTGAG-TTTGTTAC-AACTTCTA---TTATTGTCAGC-A  1132

seq1  ATGAATA  1157
      |||||||
seq2  ATGAATA  1139

seq1: chr7_8994073_8995285
seq2: B6Ng01-131O03.g_69_1199 (reverse)

seq1  ATTCTTTAAGGGATTTTTGTGTTTCCTCTTTAATGTCTTCTACCTGTTTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTTATGTTTTCCTGTAATTCTTTAAGGGATTTTTGTGTTTCCTCTTTAAT  100
                      ||||||    |||||||   | ||||||||||||
seq2  ----------------ATTCTT---AGGATTTT--GGGTTCCTCTTTAAT  29

seq1  GGTAGACAGGATTTTTGAGGTTTCTGAGATGAGACCAATTCTCCGTTTTG  150
       ||||||| || |||||||| |||| |||||| ||||  |||||||||| 
seq2  -GTAGACAAGA-TTTTGAGG-TTCT-AGATGA-ACCA--TCTCCGTTTT-  71

seq1  TGTGCTAATATATTAGAGTTAATATTGCTCAAAAACTGCTGATACTCGTG  200
      ||||||||||  | | |||| | ||| ||| |||||||||||||||||| 
seq2  TGTGCTAATAATTAAAAGTTTA-ATTTCTCCAAAACTGCTGATACTCGT-  119

seq1  GATTGCTCATTCTTTCCCTACTTTGGATTTTTGTCAACTTCCTATCATTC  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATTGCTCATTC-TTCCCTACTTTGGATTTTTGTCAACTTCCTATCATTC  168

seq1  ACTCAGAAAATAATTATTTTTGGAGTTGTGCTTCTTATAACATATTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAATAATTATTTTTGGAGTTGTGCTTCTTATAACATATTTAGG  218

seq1  AAGTACTACTTGACCATAAATGAGAGTTAGATACCCCTAATATGTGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTACTTGACCATAAATGAGAGTTAGATACCCCTAATATGTGTCCA  268

seq1  TGTGTCACACTGCATGGACATATAGGCATCATTTATCAGAGTATACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACACTGCATGGACATATAGGCATCATTTATCAGAGTATACTTTA  318

seq1  ATATCTTATATGGAGAAACAGTAAGTAAATAGCAAGTTTAATATAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATATGGAGAAACAGTAAGTAAATAGCAAGTTTAATATAGAGAA  368

seq1  ATTTATTATTTTTACCTTTGTGCCTGATATATAGTAGGACTTTTGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTTTTACCTTTGTGCCTGATATATAGTAGGACTTTTGTAAAA  418

seq1  AAAAAAAAATTGCATTTATATTCCTAACATTCAACTGGTATACTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTGCATTTATATTCCTAACATTCAACTGGTATACTTTTTAA  468

seq1  AGAAGGCTAAAGGCAAAAACAAACCTAGTTTTATTATCAGGATTAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTAAAGGCAAAAACAAACCTAGTTTTATTATCAGGATTAATTTT  518

seq1  CAAGTTTTATATCCTAACTCTTTCTTTATTTTGCACATTTAAAACATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTATATCCTAACTCTTTCTTTATTTTGCACATTTAAAACATCAT  568

seq1  TGCATGACCTACTCCAGGCAATGTAGGAATGGGGAATTATCTTTTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACCTACTCCAGGCAATGTAGGAATGGGGAATTATCTTTTGACAT  618

seq1  CATTCTTTCTCCAGACATTCTGAGCTCTTATTCTGAGGTTTCTCTACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTCCAGACATTCTGAGCTCTTATTCTGAGGTTTCTCTACCTG  668

seq1  AATCATCACAAAGTTTTTATCAGGTCGTCTTAAGTGGTGCTTTATGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCACAAAGTTTTTATCAGGTCGTCTTAAGTGGTGCTTTATGCTTA  718

seq1  AGTTTTACTTCCCTATTGGACTTTTTCCCTTCAAGGTCACATTATAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACTTCCCTATTGGACTTTTTCCCTTCAAGGTCACATTATAGTAG  768

seq1  AGTGGTGCTCTAAAGAATGGTGATCTTGAGTTTTGTTACAAACTTCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGCTCTAAAGAATGGTGATCTTGAGTTTTGTTACAAACTTCTATG  818

seq1  TTAATTGTCAGCAAATGAACACATTAAGATTCATGTTTAAATAAGAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTCAGCAAATGAACACATTAAGATTCATGTTTAAATAAGAAAGT  868

seq1  TATAAAAATTAGTATTTTATAGCTCTATTCATGATGTAAAATTAGGTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATTAGTATTTTATAGCTCTATTCATGATGTAAAATTAGGTTAA  918

seq1  CAATTTTCAATAAGCATAACAATAGTCTGAATATAATACTATAAACTAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCAATAAGCATAACAATAGTCTGAATATAATACTATAAACTAAC  968

seq1  ATGTTTATAAGAGCATATAAACTGATTATCGTTTGGCTCTTAAAAAACAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATAAGAGCATATAAACTGATTATCGTTTGGCTCTTAAAAAACAT  1018

seq1  TGATGCCTTTTGTTTTGTTTTTTGGTTTTTGTTTTGGGTTTTTGTTTTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTTTGTTTTGTTTTTTGGTTTTTGTTTTGGGTTTTTGTTTTGT  1068

seq1  TTTGATTTTTTTTTTTTTTTTGAGACAGGGTTTCATTGTATAGTCCTGGC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTTTTTTTTTTTTTGAGACAGGGTTTCATTGTATAGTCCTGGC  1118

seq1  TGACCTGGAATTC  1213
      |||||||||||||
seq2  TGACCTGGAATTC  1131