BAC Information

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BAC

Clone NameB6Ng01-134M20
Chromosome7 (Build37)
Map Location 105,379,309 - 105,380,344
singlet/doubletsinglet
Overlap genePhca
Upstream geneGab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6
Downstream geneTsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M20.bB6Ng01-134M20.g
ACCDH935007DH935008
length1,2091,028
definitionDH935007|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M20, 5' end.DH935008|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccaatttctgagtatatctatcccaattatacattctggaac
tggggaaatcaccacaggatgtgtccgaggacctactggacctactgtga
gtcggacatcagtcaaaactccattaatcacctgccctccataagcccct
actttaactggagggccacaatgtttcttgggatcccctgggatcagtgt
caactcagaaccagtatccagcagaccccgaaaagtctgattatttcctt
ttccccagtgtacagttacccttgtaaaaggccgtaggtccctctgggga
agaactggagaaagggtaacagcaaaacctttgagtgtcttatcaagatc
cttcctcagaggaacctggccaccccttcattcaaggggttccggatctg
caaactgtctcaagtctggaaattgattcactggccgagattgctgttta
ccacgatctaatgtagcctttctttcatttgtttgagaatttttctgctt
atacagatcaaacaaatatgcagtaggcttcctatgtatttcattcctgg
aaacaccatgattggttagccagtaccaaaggtccaaccgagtcatgcca
ttataaatttcacctctcctgtgctgaccattactgggtatgttataaac
attcttttgtctacgctgtccattataataactagaatcaccttgtttcc
ggcgattcaatgctgccacctggcccttgttacctcggaatccaactaaa
cccagtgaatttaattcatctaattgagcagaagcatctccaatgctaag
atctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctggtg
cccctctcaccaatttgcgtcttatagagctagtgaaaggcatatcttct
ggaccttccctttgtggacattatgctttacacatatatccactctagca
ttgcatttccctagtctaatcccttcatcaacactaagcacggatatcag
catctcagtcatttcagtagcatctttgataacacctcagcacatcaaca
ctttgaaccttttactatggcgagcttcgtataactagaatctctacttc
agaggaccatgtcaataactcacctgcttaggcttatggtcctcagctat
ccagccttgaaatccattccacgagtttacctaggtttctggtcttggga
gggtagatg
gaattccatatcttcttcctttttatattgttctctttttggtgaaacaa
attttctaatacaagggtgttcctgaccaacaatttattgaatttaaact
tttttcgaaaactttaatataggaaaacatttctccatattttgttgata
gtatagttaactatagaattctagattggaaatctttctttagaaattca
atggcactggtctactgtcttcaagcttctcatggggcttttggaaattt
aaaaactttctgatttctagtcatgtcttccaattatttcccagactcct
tgttcctgctattgcctgatacttaaaaacattctgtcatgcaaggcgag
gttcttggcttaggatgtggctttctaggtcaatctaataaatttataga
aatctatttacttttctgttttgaagattttactgaatcttttccttgtg
actttgtgcatttaaaataaagtttttgttgtagtcttaaagctagatgg
aagcaaaacagatggctgatactttgaaatactatgctctttggtatttc
tatcattcatttctcttcaggtttactctatctgatttagaatttgttgt
tttgagacacagtttcatgcagcccaggctggccttgaacttgttatata
gccaaggatgacacttgactcctcccaagtacagggttataggcaagtgc
taacacatctggcctttgctttctaattcttaaagttgtaagttcagttc
attatttaactgttcctcacccccctttgagctgagatcttactatgtag
ccttgactgatcttgaactcatagatcctcctgcttctacctcctaagaa
ctgggattgaaggcatatgctaccatgcctggtttcccttctttttgttt
tgagagtgggtactgttaggtagcccaaagatggtttcaaacttgtgtct
tctgctcaagaggagtatatgctactgggagcataaggctgtacaacctt
tgcgtagaagaagaatttagtacttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105379309_105380344
seq2: B6Ng01-134M20.g_68_1095

seq1  GAATTCCATATCTTCTTCCTTTTTATATTGTTCTCTTTTTGGTGAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATCTTCTTCCTTTTTATATTGTTCTCTTTTTGGTGAAACAA  50

seq1  ATTTTCTAATACAAGGGTGTTCCTGACCAACAATTTATTGAATTTAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAATACAAGGGTGTTCCTGACCAACAATTTATTGAATTTAAACT  100

seq1  TTTTTCGAAAACTTTAATATAGGAAAACATTTCTCCATATTTTGTTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGAAAACTTTAATATAGGAAAACATTTCTCCATATTTTGTTGATA  150

seq1  GTATAGTTAACTATAGAATTCTAGATTGGAAATCTTTCTTTAGAAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTAACTATAGAATTCTAGATTGGAAATCTTTCTTTAGAAATTCA  200

seq1  ATGGCACTGGTCTACTGTCTTCAAGCTTCTCATGGGGCTTTTGGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTGGTCTACTGTCTTCAAGCTTCTCATGGGGCTTTTGGAAATTT  250

seq1  AAAAACTTTCTGATTTCTAGTCATGTCTTCCAATTATTTCCCAGACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTTCTGATTTCTAGTCATGTCTTCCAATTATTTCCCAGACTCCT  300

seq1  TGTTCCTGCTATTGCCTGATACTTAAAAACATTCTGTCATGCAAGGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGCTATTGCCTGATACTTAAAAACATTCTGTCATGCAAGGCGAG  350

seq1  GTTCTTGGCTTAGGATGTGGCTTTCTAGGTCAATCTAATAAATTTATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGCTTAGGATGTGGCTTTCTAGGTCAATCTAATAAATTTATAGA  400

seq1  AATCTATTTACTTTTCTGTTTTGAAGATTTTACTGAATCTTTTCCTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTACTTTTCTGTTTTGAAGATTTTACTGAATCTTTTCCTTGTG  450

seq1  ACTTTGTGCATTTAAAATAAAGTTTTTGTTGTAGTCTTAAAGCTAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGCATTTAAAATAAAGTTTTTGTTGTAGTCTTAAAGCTAGATGG  500

seq1  AAGCAAAACAGATGGCTGATACTTTGAAATACTATGCTCTTTGGTATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACAGATGGCTGATACTTTGAAATACTATGCTCTTTGGTATTTC  550

seq1  TATCATTCATTTCTCTTCAGGTTTACTCTATCTGATTTAGAATTTGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCATTTCTCTTCAGGTTTACTCTATCTGATTTAGAATTTGTTGT  600

seq1  TTTGAGACACAGTTTCATGCAGCCCAGGCTGGCCTTGAACTTGTTATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACACAGTTTCATGCAGCCCAGGCTGGCCTTGAACTTGTTATATA  650

seq1  GCCAAGGATGACACTTGACTCCTCCCAAGTACAGGGTTATAGGCAAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGATGACACTTGACTCCTCCCAAGTACAGGGTTATAGGCAAGTGC  700

seq1  TAACACATCTGGCCTTTGCTTTCTAATTCTTAAAGTTGTAAGTTCAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATCTGGCCTTTGCTTTCTAATTCTTAAAGTTGTAAGTTCAGTTC  750

seq1  ATTATTTAACTGTTCCTCACCCCCCTTTGAGCTGAGATCTTACTATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAACTGTTCCTCACCCCCCTTTGAGCTGAGATCTTACTATGTAG  800

seq1  CCTTGACTGATCTTGAACTCATAGATCCTCCTGCTTCTACCTCCTAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTGATCTTGAACTCATAGATCCTCCTGCTTCTACCTCCTAAGAA  850

seq1  CTGGGATTGAAGGCATATGCTACCATGCCTGGTTTCCCTTCTTTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGGGATTGAAGGCATATGCTACCATGCCTGGTTTCCCTTCTTTTTG-TT  899

seq1  TTGAGAGTGGGTACTGTTAGGTAGCCCAAAGATGGTTTCAAACTTGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGAGAGTGGGTACTGTTAGGTAGCCCAAAGATGGTTTCAAACTTGT-GT  948

seq1  CTTCCTGCCTCAGGAGGAAGTATATGCCTACTGGGAGCATAGGGCTGTAC  1000
      ||| ||| |||| |||| |||||||| |||||||||||||| ||||||||
seq2  CTT-CTG-CTCAAGAGG-AGTATATG-CTACTGGGAGCATAAGGCTGTAC  994

seq1  AACCTTTGCCGTTAGAGAAGAATTTTAGTACTTTTT  1036
      |||||||| |||   ||||||| |||||||||||||
seq2  AACCTTTG-CGTAGAAGAAGAA-TTTAGTACTTTTT  1028