BAC Information

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BAC

Clone NameB6Ng01-135D17
Chromosome7 (Build37)
Map Location 151,540,006 - 151,704,533
singlet/doubletdoublet
Overlap geneShank2, Cttn, Ppfia1
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneFadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D17.bB6Ng01-135D17.g
ACCDH935326DH935327
length1,1091,103
definitionDH935326|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D17, 5' end.DH935327|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,540,006 - 151,540,933)(151,703,427 - 151,704,533)
sequence
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgtgc
cggtgaaactcccgtcccgagtttcctcccgggttttttcttcccggatt
ttttctcgtcccggaatttctcgtcccgggtttcagcaccaattcttact
agcgtgttctcacgcccggccaggaagaacacagcaaaccagaatcttct
gcggcaaaactttattgcttacatctttgggagccaggagggcaagcgcc
cagcgcccagccccaaaaacgaaagccccttctatatttttaggagccag
agctccggcgcgccaaagcgcagagcgtgctctattgtttacatctttag
gcagcgagagagcgcagggcgcgcagagccagagagatgccagcgagaga
gaaatggcggaaaccccgtccccttttttaagagagttatatttcgccta
ggacgcatcactccctgattggctgcagcccatggccgagctgacgttta
cgggaaaggtagagtacaagtagtcgtaatacccttggcacatgcgcaga
ttatttgtttaccacttagaacacaggatgtcagcgccatcttgtgacgg
cgaatgtgggggcggctcccaacagaagaggccactgtgagctctaggca
ctgtgagattacagatggtagaagaatggctgagttctccatcaccacct
catcctacctcagccacagctagaagactaggcacccattagaatagtct
atgtgaaatgagaggcttgtgtagagctttgggcaagaaaggtgggaatt
gtactatgtgatatccctctgggagggagggataaaactgaaggtacagt
atcactcaggtcccctacttttaccagagtgacagctatgccccctaatc
ttcagatgggaggtgtactatagacttttagtcagtggtctgtgatgtga
agagatgccatgaccatggcaacctcctataaaagagagaatttaactgg
aggctggcttaacagttcagagttttcgttccatttattgtctatggcag
gggagcatg
gaattcaggtcaaaggaaacactgcatgaattagagaatcaactaggttg
tgctgttcttgggccacagggaattatttctgtggtagagagttgagatg
ttcttttaagacttgcctctttaagaaatatagtaaggggattagaggga
tggcttagtggttaaaagcaatggctgctcatccagatgacttgggtcta
attcccagcacccacatagcagttcacaactatctgtaatttaactacag
ttccaggggatctgacacccttacacagacatacatacaggcaaaacatt
atttcaatgcacatacaataaaatttatttatagatagccaacagttagg
aaataaggaagaagctaaaaactgaattggggaatagaagacagatacca
actatgccaaaagtcaagtcctgggctcagtgtttggggtttatagtttt
ggccttgctgatttctgtctctttgtcaacatgcttgaggtttgtgagtc
tgtccagctcttactgagaaaatgaagcagttctgcccacagtgctctat
aagcctggttgttgcttaggcagacacaggttacaccttcactgcagatg
ccttcagattcatggatgcttgaagtgttgtatggggcgttttattagta
ttgtgtagtcaagtacatgcttggtgacacgagcagattaaccagacaaa
gctgttgatcatgtgggcgaatatgcttcaagtgtgtccattttcactct
ggttgtaaaagcagtttacactgggggagcagcagtttcatgctttgaga
tgtgtggtgtctctctgtttcctgagtgttctgatgagttctgcgtttat
catctccgtctccctctggaatctccaacacaggcaatggcccagatgga
ggatatggaagagagaatcaccacccttgagaaacgctacctcgccgcac
agcgttgaagccacgtctgtgcatgacctcatgacaaacttgaaatgaaa
ttgcaaataagacctccatgcaccgacagtactggggtctgtgggccctt
tctagttttaattattttgaagccgaagacctttctctttgtaattgtag
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_151540006_151540933
seq2: B6Ng01-135D17.b_226_1156

seq1  GGTTTCAGCACCAATTCTTACTAGCGTGTTCTCACGCCCGGCCAGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGCACCAATTCTTACTAGCGTGTTCTCACGCCCGGCCAGGAAGA  50

seq1  ACACAGCAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTT  100

seq1  GGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAGCCCCAAAAACGAAAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAGCCCCAAAAACGAAAGCCC  150

seq1  CTTCTATATTTTTAGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATATTTTTAGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGT  200

seq1  GCTCTATTGTTTACATCTTTAGGCAGCGAGAGAGCGCAGGGCGCGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTGTTTACATCTTTAGGCAGCGAGAGAGCGCAGGGCGCGCAGAG  250

seq1  CCAGAGAGATGCCAGCGAGAGAGAAATGGCGGAAACCCCGTCCCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGATGCCAGCGAGAGAGAAATGGCGGAAACCCCGTCCCCTTTTT  300

seq1  TAAGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAG  350

seq1  CCCATGGCCGAGCTGACGTTTACGGGAAAGGTAGAGTACAAGTAGTCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCCGAGCTGACGTTTACGGGAAAGGTAGAGTACAAGTAGTCGTA  400

seq1  ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGA  450

seq1  TGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAGAAG  500

seq1  AGGCCACTGTGAGCTCTAGGCACTGTGAGATTACAGATGGTAGAAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACTGTGAGCTCTAGGCACTGTGAGATTACAGATGGTAGAAGAATG  550

seq1  GCTGAGTTCTCCATCACCACCTCATCCTACCTCAGCCACAGCTAGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTCTCCATCACCACCTCATCCTACCTCAGCCACAGCTAGAAGAC  600

seq1  TAGGCACCCATTAGAATAGTCTATGTGAAATGAGAGGCTTGTGTAGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACCCATTAGAATAGTCTATGTGAAATGAGAGGCTTGTGTAGAGCT  650

seq1  TTGGGCAAGAAGGGTGGGAATTGTACTATGTGATATCCCTCTGGGAGGGG  700
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  TTGGGCAAGAAAGGTGGGAATTGTACTATGTGATATCCCTCTGGGA-GGG  699

seq1  AGGGATAAAACTGAGGGTACAGTATCACTCAGGTCCCCTACTTTTACCAG  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGGATAAAACTGAAGGTACAGTATCACTCAGGTCCCCTACTTTTACCAG  749

seq1  AGTGACAGCTATGCCCCCTAATCTTCAGAATGGGAGGTGTACTATAGACT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGACAGCTATGCCCCCTAATCTTCAG-ATGGGAGGTGTACTATAGACT  798

seq1  TTTAGTCAGTGGTCTGTTGATGTGAAGAGATGCCATGACCATGGCAA-CT  849
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TTTAGTCAGTGGTCTG-TGATGTGAAGAGATGCCATGACCATGGCAACCT  847

seq1  CCTATAAAAGAGAGAATTTAACT-GAGGCTGGCTT-ACAGTTTCAGAGGT  897
      ||||||||||||||||||||||| ||||||||||| |||| ||||||| |
seq2  CCTATAAAAGAGAGAATTTAACTGGAGGCTGGCTTAACAG-TTCAGAGTT  896

seq1  TTCG-TCCA-TTATTGTC-ATGGCA-GGGAGCATG  928
      |||| |||| |||||||| |||||| |||||||||
seq2  TTCGTTCCATTTATTGTCTATGGCAGGGGAGCATG  931

seq1: chr7_151703427_151704533
seq2: B6Ng01-135D17.g_69_1171 (reverse)

seq1  CAACATACAATTTACAAAG-GAAAGGTCTTCGGCTTCACAAATAATTAAA  49
      |||| ||||| |||||||| |||||||||||||||||| |||||||||||
seq2  CAAC-TACAA-TTACAAAGAGAAAGGTCTTCGGCTTCA-AAATAATTAAA  47

seq1  ACTAGAAAGGGGCCCACAGACCCCAGTACCTGTCGGTGCATGGAGTCTTT  99
      |||||||| ||||||||||||||||||| ||||||||||||||||   ||
seq2  ACTAGAAA-GGGCCCACAGACCCCAGTA-CTGTCGGTGCATGGAGGTCTT  95

seq1  ATTTGCAATTTCATTTTCAAGTTTGTCATTGAGGTCATGCACAGACGTGG  149
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  ATTTGCAATTTCA-TTTCAAGTTTGTCA-TGAGGTCATGCACAGACGTGG  143

seq1  CTTC-ACGCTGTGCGGCGAGGTAGCGTTTCTCAAGGGTGGTGATTCTCTC  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACGCTGTGCGGCGAGGTAGCGTTTCTCAAGGGTGGTGATTCTCTC  193

seq1  TTCCATATCCTCCTTCTGGGCCATTGCCTGTGTTGGAGATTCCAGAGGGA  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCCATATCCTCCATCTGGGCCATTGCCTGTGTTGGAGATTCCAGAGGGA  243

seq1  GACGGAGATGATAAACGCAGAACTCATCAGAACACTCAGGAAACAGAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGATGATAAACGCAGAACTCATCAGAACACTCAGGAAACAGAGAG  293

seq1  ACACCACACATCTC-AAGCATGAAACTGCTGCTCCCCCAGTGTAAACTGC  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACCACACATCTCAAAGCATGAAACTGCTGCTCCCCCAGTGTAAACTGC  343

seq1  TTTTACAACCAGAGTGAAAATGGACACACTTGAAGCATATTCGCCCACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAACCAGAGTGAAAATGGACACACTTGAAGCATATTCGCCCACAT  393

seq1  GATCAACAGCTTTGTCTGGTTAATCTGCTCGTGTCACCAAGCATGTACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACAGCTTTGTCTGGTTAATCTGCTCGTGTCACCAAGCATGTACTT  443

seq1  GACTACACAATACTAATAAAACGCCCCATACAACACTTCAAGCATCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACAATACTAATAAAACGCCCCATACAACACTTCAAGCATCCATG  493

seq1  AATCTGAAGGCATCTGCAGTGAAGGTGTAACCTGTGTCTGCCTAAGCAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAGGCATCTGCAGTGAAGGTGTAACCTGTGTCTGCCTAAGCAAC  543

seq1  AACCAGGCTTATAGAGCACTGTGGGCAGAACTGCTTCATTTTCTCAGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCTTATAGAGCACTGTGGGCAGAACTGCTTCATTTTCTCAGTAA  593

seq1  GAGCTGGACAGACTCACAAACCTCAAGCATGTTGACAAAGAGACAGAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGACAGACTCACAAACCTCAAGCATGTTGACAAAGAGACAGAAAT  643

seq1  CAGCAAGGCCAAAACTATAAACCCCAAACACTGAGCCCAGGACTTGACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCCAAAACTATAAACCCCAAACACTGAGCCCAGGACTTGACTT  693

seq1  TTGGCATAGTTGGTATCTGTCTTCTATTCCCCAATTCAGTTTTTAGCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATAGTTGGTATCTGTCTTCTATTCCCCAATTCAGTTTTTAGCTTC  743

seq1  TTCCTTATTTCCTAACTGTTGGCTATCTATAAATAAATTTTATTGTATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTTCCTAACTGTTGGCTATCTATAAATAAATTTTATTGTATGT  793

seq1  GCATTGAAATAATGTTTTGCCTGTATGTATGTCTGTGTAAGGGTGTCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAAATAATGTTTTGCCTGTATGTATGTCTGTGTAAGGGTGTCAGA  843

seq1  TCCCCTGGAACTGTAGTTAAATTACAGATAGTTGTGAACTGCTATGTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGAACTGTAGTTAAATTACAGATAGTTGTGAACTGCTATGTGGG  893

seq1  TGCTGGGAATTAGACCCAAGTCATCTGGATGAGCAGCCATTGCTTTTAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAATTAGACCCAAGTCATCTGGATGAGCAGCCATTGCTTTTAAC  943

seq1  CACTAAGCCATCCCTCTAATCCCCTTACTATATTTCTTAAAGAGGCAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGCCATCCCTCTAATCCCCTTACTATATTTCTTAAAGAGGCAAGT  993

seq1  CTTAAAAGAACATCTCAACTCTCTACCACAGAAATAATTCCCTGTGGCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGAACATCTCAACTCTCTACCACAGAAATAATTCCCTGTGGCCC  1043

seq1  AAGAACAGCACAACCTAGTTGATTCTCTAATTCATGCAGTGTTTCCTTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCACAACCTAGTTGATTCTCTAATTCATGCAGTGTTTCCTTTG  1093

seq1  ACCTGAATTC  1107
      ||||||||||
seq2  ACCTGAATTC  1103