BAC Information

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BAC

Clone NameB6Ng01-135J10
Chromosome15 (Build37)7 (Build37)
Map Location 17,341,672 - 17,342,08296,529,661 - 96,530,761
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135J10.bB6Ng01-135J10.g
ACCDH935587DH935588
length9991,094
definitionDH935587|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J10, 5' end.DH935588|Mus musculus domesticus DNA, BAC clone: B6Ng01-135J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,341,672 - 17,342,082)(96,529,661 - 96,530,761)
sequence
gaattcatacaaaggtgaacagagaaaactgaccccataagactgcctct
gacccccatgtgtgtggcaaggcatgtgcatgcccaacccctacaccatt
gcacataatgataatgaataaagtctaaaaatagttgttaaagaatcttt
actgagccacaaacaaaacatgttacttttatctttcactttcctggtgt
tctttttatagttttttttttaaacattgtaactgaatttcatggaacat
tttacaattaaacatcccttctgctctctttccttaataatctttttaaa
aatcacattttctcaatagtatgtgctgctcttcacagttcataaaacac
aaattcatgatctcatgaatgggttgaagcccatgagaccacaaagcaat
cattatacacatttcaaaggtgagagagctgcagggtaaagaattgagtc
attttctccaggctgctccactctgtaggtgagcttggacttgaactcca
cctgtgctgttgcgcgcactcaacaggccaggaagaacgacgctgctaca
ggatccttctgcacacgtttattcagtcctgtttcttcttgtttatatct
ctcttgtttatatctcccttgtttttatatctcccttgtttttatatctc
ccttgtttttatatctccccactaatagtaatcctctcttgaataataat
cctccctctagcctgggcctctcactcttttatactttcagttcccatcc
acgcacagcaggccacgccacctcaccaggcacgcagcttcagctaatca
gggcagcaggggcaaatctccatcaaactggattcacctgaatcctggta
cacctgcgcagcactcaagatgtttgtgtcttatatgaggaagtcagtgc
aagtcatatgacttagctgcagtccctggcgcctttgggactgccgccac
acccgctccccacattccccttttttcttttttggcagagagaatgtct
gaattccatacacttgcagcttaatgagcaatttgaggcatcctgtggct
gtaccgccagccagccacagcttggctccagcaaggtcacttcttttcct
gtctgacgttcttgtgtgtgttttcttgcagcttaccactattgtttgca
aagcaaacaagaggagaaaactgtctttagtcatctttagctcctattat
atttctctggcaggcttgggttgtgactgctcctatttttgttttatgag
tgcgatggccttacatagctccttgttcacgaatcagtagttctttcagg
ctcttttctgtttcctctgcccagactgttcttgttccttctcagtttta
tgcctggcgaacctagctgtctgttttataagtttagggatctggcatgg
gctctctgttcagacttgtttttccctaaaggtcgctggcctaaaagaaa
gagtccctgtggtgtgagtctaagagcatggagaacttgaccgagggagg
gacttagaaagcatgggcacaggacagcaggctgctgggtttgcctttcc
cttccgccttccactagtccctcattgtagaagaaaaatggctttacttt
agtatggcagggcttcagtggatttttgttcttaacaaagatgtattttt
taattgttttttattaatccattttagaatcttttatattcatttgcctt
ggccctctccctagatatcactattccttcaatatcagcgggccacatac
ttggagaactcttctgctatggcttctacggaaggtctggggctcctgtt
gctgtgagctactcaggggtgatagtgagaggtcaggcacacaactggct
ttgctgttctagaaggttcaagagttatagcacatggactgactcaagtc
ccttttaatcctaatacttgtgttctcggcacttgtacatgtttttcacc
cagtatctgggtcacaaactgaattgtaagtgcttcaagtggccagaaca
ggcagagtgagtagaaaattactacaaataagtattttcgtggtcagggt
tgggggtgggctgcaatgtattggcaccatgcatatacaagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17341672_17342082
seq2: B6Ng01-135J10.b_574_1039 (reverse)

seq1  TCTCTGCCAAAAAAGAAAAAAGGGGAGATGTGAGGAGCGGGTGTGGCGGC  50
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  TCTCTGCCAAAAAAGAAAAAAGGGGA-ATGTGGGGAGCGGGTGTGGCGGC  49

seq1  AGTCCCAAAGGCACCAGGGATTGCAGCTAAGTCGTATGACTTGCACCTGA  100
      |||||||||||| ||||||| |||||||||||| ||||||||||| ||||
seq2  AGTCCCAAAGGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCA-CTGA  98

seq1  CTTCCTCTTATAAGCCACAAACATCTTGAGAGCTGCACAGGTGTACCATG  150
      ||||||| |||||| ||||||||||||||| ||||| ||||||||||| |
seq2  CTTCCTCATATAAGACACAAACATCTTGAGTGCTGCGCAGGTGTACCAGG  148

seq1  ATACTGGTGAATCCATTTTGATCGAGATATGCGCCTGCTGCCCTGATTAG  200
      || | |||||||||| |||||| ||||| ||| |||||||||||||||||
seq2  ATTCAGGTGAATCCAGTTTGATGGAGATTTGCCCCTGCTGCCCTGATTAG  198

seq1  CTGAAGCTGCGTGCCTGGTGAGGTGGTGTGGCCTGCTGTGCGTGGATGGG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGAAGCTGCGTGCCTGGTGAGGTGGCGTGGCCTGCTGTGCGTGGATGGG  248

seq1  AACTGAGAGTATAAAAGAGTGAGAGGCCCAGGTT----------------  284
      |||||| ||||||||||||||||||||||||| |                
seq2  AACTGAAAGTATAAAAGAGTGAGAGGCCCAGGCTAGAGGGAGGATTATTA  298

seq1  ----------------------TCGGGGGAAATATAAACAAGGGAGATAT  312
                            | ||| || ||| |||||||||||||||
seq2  TTCAAGAGAGGATTACTATTAGTGGGGAGATATAAAAACAAGGGAGATAT  348

seq1  -------------------AAACAAGGGAGATATAAACAAGGGAGATATA  343
                         |||||||||||||||||||||| ||||||||
seq2  AAAAACAAGGGAGATATAAAAACAAGGGAGATATAAACAAGAGAGATATA  398

seq1  AACAAGAAGAAACAGGACTGAATAAACGTGTGCAGAAGGATCCTGTTGCA  393
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACAAGAAGAAACAGGACTGAATAAACGTGTGCAGAAGGATCCTGTAGCA  448

seq1  GCGTCGTTCTTCCTGGCC  411
      ||||||||||||||||||
seq2  GCGTCGTTCTTCCTGGCC  466

seq1: chr7_96529661_96530761
seq2: B6Ng01-135J10.g_68_1161

seq1  GAATTCCATACACTTGCAGCTTAATGAGCAATTTGAGGCATCCTGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACACTTGCAGCTTAATGAGCAATTTGAGGCATCCTGTGGCT  50

seq1  GTACCGCCAGCCAGCCACAGCTTGGCTCCAGCAAGGTCACTTCTTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGCCAGCCAGCCACAGCTTGGCTCCAGCAAGGTCACTTCTTTTCCT  100

seq1  GTCTGACGTTCTTGTGTGTGTTTTCTTGCAGCTTACCACTATTGTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACGTTCTTGTGTGTGTTTTCTTGCAGCTTACCACTATTGTTTGCA  150

seq1  AAGCAAACAAGAGGAGAAAACTGTCTTTAGTCATCTTTAGCTCCTATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAGAGGAGAAAACTGTCTTTAGTCATCTTTAGCTCCTATTAT  200

seq1  ATTTCTCTGGCAGGCTTGGGTTGTGACTGCTCCTATTTTTGTTTTATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGGCAGGCTTGGGTTGTGACTGCTCCTATTTTTGTTTTATGAG  250

seq1  TGCGATGGCCTTACATAGCTCCTTGTTCACGAATCAGTAGTTCTTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGGCCTTACATAGCTCCTTGTTCACGAATCAGTAGTTCTTTCAGG  300

seq1  CTCTTTTCTGTTTCCTCTGCCCAGACTGTTCTTGTTCCTTCTCAGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTGTTTCCTCTGCCCAGACTGTTCTTGTTCCTTCTCAGTTTTA  350

seq1  TGCCTGGCGAACCTAGCTGTCTGTTTTATAAGTTTAGGGATCTGGCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCGAACCTAGCTGTCTGTTTTATAAGTTTAGGGATCTGGCATGG  400

seq1  GCTCTCTGTTCAGACTTGTTTTTCCCTAAAGGTCGCTGGCCTAAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGTTCAGACTTGTTTTTCCCTAAAGGTCGCTGGCCTAAAAGAAA  450

seq1  GAGTCCCTGTGGTGTGAGTCTAAGAGCATGGAGAACTTGACCGAGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTGTGGTGTGAGTCTAAGAGCATGGAGAACTTGACCGAGGGAGG  500

seq1  GACTTAGAAAGCATGGGCACAGGACAGCAGGCTGCTGGGTTTGCCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGAAAGCATGGGCACAGGACAGCAGGCTGCTGGGTTTGCCTTTCC  550

seq1  CTTCCGCCTTCCACTAGTCCCTCATTGTAGAAGAAAAATGGCTTTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCCTTCCACTAGTCCCTCATTGTAGAAGAAAAATGGCTTTACTTT  600

seq1  AGTATGGCAGGGCTTCAGTGGATTTTTGTTCTTAACAAAGATGTATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGCAGGGCTTCAGTGGATTTTTGTTCTTAACAAAGATGTATTTTT  650

seq1  TAATTGTTTTTTATTAATCCATTTTAGAATCTTTTATATTCATTTGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTTTTATTAATCCATTTTAGAATCTTTTATATTCATTTGCCTT  700

seq1  GGCCCTCTCCCTAGATATCACTATTCCTTCAATATCAGCGGGCCACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTCCCTAGATATCACTATTCCTTCAATATCAGCGGGCCACATAC  750

seq1  TTGGAGAACTCTTCTGCTATGGCTTCTACGGAAGGTCTGGGGCTCCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAACTCTTCTGCTATGGCTTCTACGGAAGGTCTGGGGCTCCTGTT  800

seq1  GCTGTGAGCTACTCAGGGGTGATAGTGAGAGGTCAGGCACACAACTGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGCTACTCAGGGGTGATAGTGAGAGGTCAGGCACACAACTGGCT  850

seq1  TTGCTGTTCTAGAAGGTTCAAGAGTTATAGCCACAATGGACTGACTCAGG  900
      |||||||||||||||||||||||||||||| ||| ||||||||||||| |
seq2  TTGCTGTTCTAGAAGGTTCAAGAGTTATAG-CAC-ATGGACTGACTCAAG  898

seq1  TCCCTTTTAATCCT-ATACTTGTGTTCTCGGCACTTGTACATG-TTTTCA  948
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  TCCCTTTTAATCCTAATACTTGTGTTCTCGGCACTTGTACATGTTTTTCA  948

seq1  CCCAGTATCTGGGTCAACCAAACTGAA-TGTAAGTGCTTCAAGTTGGCCA  997
      ||||||||||||||||  ||||||||| ||||||||||||||| ||||| 
seq2  CCCAGTATCTGGGTCA--CAAACTGAATTGTAAGTGCTTCAAG-TGGCC-  994

seq1  AGAACAGGCAGAAGTTGAAGTAGAAAATTACTACAAATAAGTAATTTTCG  1047
      ||||||||||| |||   |||||||||||||||||||||||| |||||||
seq2  AGAACAGGCAG-AGT--GAGTAGAAAATTACTACAAATAAGT-ATTTTCG  1040

seq1  TGTGCAGGGGTGGGGGTGGGCTGCACATGTATGTGCA-CATGCATATACA  1096
      ||  ||||| ||||||||||||||| ||||||  ||| ||||||||||||
seq2  TGGTCAGGGTTGGGGGTGGGCTGCA-ATGTATTGGCACCATGCATATACA  1089

seq1  AGCAA  1101
      |||||
seq2  AGCAA  1094