BAC Information

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BAC

Clone NameB6Ng01-136F01
Chromosome7 (Build37)3 (Build37)
Map Location 17,432,729 - 17,433,791125,064,982 - 125,065,416
singlet/doubletsingletsinglet
Overlap genePrkd2
Upstream geneCrx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4
Downstream geneDact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136F01.bB6Ng01-136F01.g
ACCDH936118DH936119
length1,057778
definitionDH936118|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F01, 5' end.DH936119|Mus musculus domesticus DNA, BAC clone: B6Ng01-136F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,432,729 - 17,433,791)(125,064,982 - 125,065,416)
sequence
gaattctgcctgtggtcaggcaacttgcacctgagatccccaacaggctg
cctgccctgaggattctggagctgcctggccaactcctccagataaactg
ttgctatttttctccttctgttctgtttctttgcttcatctctgattgac
acggagctcatttccatcaccacacctcaagatctccctagagatggctc
agcagttaaagcacttgtcttttgtacaggacaggagttcggttcctaac
ccccatgcaacatttgtggtccaacagacacattcgggcaaaacaccaat
gcacaaagcataaaaataaacaaaactaaataaatctccatcataagggc
cctatcttcctatgctctatgtcccatacctgaactctgaaaagggctct
gctctgtccaggaaccctgaacctcacttataccaagaatcacctcctag
gctctgtatccattccagggcccctcaaactttgcctgcctggagtccta
acttagcccaccagctccatgccccccccccccgggggggactctgccca
cagacctgaaccccaaccgcctcccaagttctcttagagcttctgtcact
tacttctaagctccattccttgaccttaacccagtccccgcatgcctttc
ctagcttcgcctaccatgtcgcaccttcccaggctccgcccagtcccctt
tggctctcaccatcgcacttgaggccctggcgcacgaggccgaagagcat
ctccccgcagtggtcacagaaggcgggagcgcggtacgagtgcacagtga
gagcatgcggtcggatctggaaatcctcgaaggtggccgaggctgtgggc
agcaaggagggaggatacacttgagccaagagatgagtgcctggcttatg
gagctggagctcacagagaaactctgtctcgaatacacacacaaacgcca
cactgtcacactcgccacacactctcacactctcaaaccagctaccactg
agctaagcacctatgtgcctcctgataagtgggagtaagtggggagttat
caaatgg
gaattcactcctcttgaggcaagtagaccttgggataaagaatttagcat
tatcatacatagcaacaaaccaaacctcagcattttggtgtgttgataaa
tatgtgtgtgatttatgatttattgtttattattttagtcaatcctggca
gagcctgcctttaatctcagcgcgtggaaggcagaaggaagcaggtggat
cactgtaagtttgaccctagcctgatctacgtagtgagttccaggtcaac
cagaccctgtcgaaagagaaagagagagagagagagagagagagagagag
agagagagagagagagagaagaaggaggaggaggaggaccctgattatat
cttaaataacatacagtaattgaagtaattacaggacgcagaatgcagaa
aaaaatatatatataaatctagaatgtctctgtgttgggaatacattttt
ttcttgttattttatcaaatatatcataaattgttttaaactataattac
tctaccatgttgttacagaataaagcaaatattgtcctctcgtataaaat
ctgcattaattttgttactaattatcattttggtagtttattttaatttt
atttatgtgtctgtgtctatgtgttattatgccaaatgtgtgtatgttct
ctgaggaccagaagaaactatacaatctcctaaagtactagctacaaata
tctggtgagttctcctgatatgggtatggggaatttaaacagtatacttt
aaggatgtattcaatgaatatttaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17432729_17433791
seq2: B6Ng01-136F01.b_44_1100 (reverse)

seq1  CCATTTAAAAACTCCCCACTAACTCCCACTTTATCAGGAGGCACATAGGT  50
      |||||| | ||||||||||| |||||||| ||||||||||||||||||||
seq2  CCATTTGATAACTCCCCACTTACTCCCAC-TTATCAGGAGGCACATAGGT  49

seq1  GCTTTGCTCAGTGGGAAGCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      |||| ||||||| || ||||||| || | ||||| | ||||||| | | |
seq2  GCTTAGCTCAGT-GGTAGCTGGTTTGAGAGTGTGAGAGTGTGTG-GCGAG  97

seq1  TGTGTGTGTGTGTGTGTTTGTGTGTGTTTTCGAGACAGAGTTTCTCTGTG  150
      ||||   ||||| | |||||||||||| ||||||||||||||||||||||
seq2  TGTGACAGTGTG-GCGTTTGTGTGTGTATTCGAGACAGAGTTTCTCTGTG  146

seq1  AGCCCCAGCTACCATAAGCCAGGCACCCATCCTCTTGGCTCAAGTGTATC  200
      ||| |||||| ||||||||||||||| ||| |||||||||||||||||||
seq2  AGCTCCAGCT-CCATAAGCCAGGCACTCAT-CTCTTGGCTCAAGTGTATC  194

seq1  CTCCCTCCTTGCTGCCCACAGCCTCGGCCACCTTCGAGGATTTCCAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTTGCTGCCCACAGCCTCGGCCACCTTCGAGGATTTCCAGATC  244

seq1  CGACCGCATGCTCTCACTGTGCACTCGTACCGCGCTCCCGCCTTCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCGCATGCTCTCACTGTGCACTCGTACCGCGCTCCCGCCTTCTGTGA  294

seq1  CCACTGCGGGGAGATGCTCTTCGGCCTCGTGCGCCAGGGCCTCAAGTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCGGGGAGATGCTCTTCGGCCTCGTGCGCCAGGGCCTCAAGTGCG  344

seq1  ATGGTGAGAGCCAAAGGGGACTGGGCGGAGCCTGGGAAGGTGCGACATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGAGCCAAAGGGGACTGGGCGGAGCCTGGGAAGGTGCGACATGG  394

seq1  TAGGCGAAGCTAGGAAAGGCATGCGGGGACTGGGTTAAGGTCAAGGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGAAGCTAGGAAAGGCATGCGGGGACTGGGTTAAGGTCAAGGAATG  444

seq1  GAGCTTAGAAGTAAGTGACAGAAGCTCTAAGAGAACTTGGGAGGCGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAGAAGTAAGTGACAGAAGCTCTAAGAGAACTTGGGAGGCGGTTG  494

seq1  GGGTTCAGGTCTGTGGGCAGAGTCCCCCCCGGGGGGGGGGGGCATGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGGTCTGTGGGCAGAGTCCCCCCCGGGGGGGGGGGGCATGGAGC  544

seq1  TGGTGGGCTAAGTTAGGACTCCAGGCAGGCAAAGTTTGAGGGGCCCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCTAAGTTAGGACTCCAGGCAGGCAAAGTTTGAGGGGCCCTGGA  594

seq1  ATGGATACAGAGCCTAGGAGGTGATTCTTGGTATAAGTGAGGTTCAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAGAGCCTAGGAGGTGATTCTTGGTATAAGTGAGGTTCAGGGT  644

seq1  TCCTGGACAGAGCAGAGCCCTTTTCAGAGTTCAGGTATGGGACATAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACAGAGCAGAGCCCTTTTCAGAGTTCAGGTATGGGACATAGAGC  694

seq1  ATAGGAAGATAGGGCCCTTATGATGGAGATTTATTTAGTTTTGTTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGATAGGGCCCTTATGATGGAGATTTATTTAGTTTTGTTTATTT  744

seq1  TTATGCTTTGTGCATTGGTGTTTTGCCCGAATGTGTCTGTTGGACCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTTGTGCATTGGTGTTTTGCCCGAATGTGTCTGTTGGACCACAA  794

seq1  ATGTTGCATGGGGGTTAGGAACCGAACTCCTGTCCTGTACAAAAGACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCATGGGGGTTAGGAACCGAACTCCTGTCCTGTACAAAAGACAAG  844

seq1  TGCTTTAACTGCTGAGCCATCTCTAGGGAGATCTTGAGGTGTGGTGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAACTGCTGAGCCATCTCTAGGGAGATCTTGAGGTGTGGTGATGG  894

seq1  AAATGAGCTCCGTGTCAATCAGAGATGAAGCAAAGAAACAGAACAGAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCTCCGTGTCAATCAGAGATGAAGCAAAGAAACAGAACAGAAGG  944

seq1  AGAAAAATAGCAACAGTTTATCTGGAGGAGTTGGCCAGGCAGCTCCAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAGCAACAGTTTATCTGGAGGAGTTGGCCAGGCAGCTCCAGAA  994

seq1  TCCTCAGGGCAGGCAGCCTGTTGGGGATCTCAGGTGCAAGTTGCCTGACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGGCAGGCAGCCTGTTGGGGATCTCAGGTGCAAGTTGCCTGACC  1044

seq1  ACAGGCAGAATTC  1063
      |||||||||||||
seq2  ACAGGCAGAATTC  1057

seq1: chr3_125064982_125065416
seq2: B6Ng01-136F01.g_402_842 (reverse)

seq1  GTTTGAAATA-TCATTGAATACATC--TTAAGTATACTGTTTAA--TTCC  45
      |||| ||||| ||||||||||||||  | |||||||||||||||  | ||
seq2  GTTTTAAATATTCATTGAATACATCCTTAAAGTATACTGTTTAAATTCCC  50

seq1  CATACCCATATCAGGAG-ACTCA-CAGATATTTGTAGCTAGTACTTTAGG  93
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  CATACCCATATCAGGAGAACTCACCAGATATTTGTAGCTAGTACTTTAGG  100

seq1  AGATTGTATAGTTTCTTCTGGTCCTCATGAGTACATACACACATTTGGCA  143
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  AGATTGTATAGTTTCTTCTGGTCCTCA-GAGAACATACACACATTTGGCA  149

seq1  TAATAACACATAGACACAGACACATAAATAAAATTAAAATAAACTACCAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACACATAGACACAGACACATAAATAAAATTAAAATAAACTACCAA  199

seq1  AATGATAATTAGTAACAAAATTAATGCAGATTTTATACGAGAGGACAATA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATTAGTAACAAAATTAATGCAGATTTTATACGAGAGGACAATA  249

seq1  TTTGCTTTATTCTGTAACAACATGGTAGAGTAATTATAGTTTAAAACAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTATTCTGTAACAACATGGTAGAGTAATTATAGTTTAAAACAAT  299

seq1  TTATGATATATTTGATAAAATAACAAGAAAAAAATGTATTCCCAACACAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATATATTTGATAAAATAACAAGAAAAAAATGTATTCCCAACACAG  349

seq1  AGACATTCTAGATTTATATATATATTTTTTTCTGCATTCTGCGTCCTGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCTAGATTTATATATATATTTTTTTCTGCATTCTGCGTCCTGTA  399

seq1  ATTACTTCAATTACTGTATGTTATTTAAGATATAATCAGGGT  435
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCAATTACTGTATGTTATTTAAGATATAATCAGGGT  441