BAC Information

Click to search

BAC

Clone NameB6Ng01-136G20
Chromosome7 (Build37)
Map Location 6,347,478 - 6,471,508
singlet/doubletdoublet
Overlap geneZfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349
Upstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
Downstream geneLOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136G20.bB6Ng01-136G20.g
ACCDH936202DH936203
length1,132740
definitionDH936202|Mus musculus domesticus DNA, BAC clone: B6Ng01-136G20, 5' end.DH936203|Mus musculus domesticus DNA, BAC clone: B6Ng01-136G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,347,478 - 6,348,634)(6,470,769 - 6,471,508)
sequence
gaattcattcggggaagaaaccgtatgaatgtaaggaatgtcggaaaacc
ttcatccagattggacaccttaaccaacataagagagtccataccgggga
gagaacgtacaactacaagaagggcaggagggccttcaggcagactgcac
actttgctcaccatcagcagattcattccggaaagtcacctgctcaccac
tctttgccttccacatcgaatcctgtggatctcttctccaaattcgtctg
gaatccatcctcactgccatcatcataacctcagagcctcgacatttcca
ccacgctcgtttaccagctcgtctctctctccctttgttcattcttgtcc
cttatgagtccttcatgttacaaccaggttggattatttttggagtgtaa
atgtaattaatttgctcatataaagcttatattcactggttaatgcctga
gatgtgtttagcacagtgcccgattcataccaagtactcagcaaacttgg
gtcttttgaaagtggaaaatgcattctaatcagctctgatggaaacaatg
caatagaatgaggctcggcgcaaccagcgtttagagcaggaagggagttc
tctgagttggtgatgaggcttccttctttttcttgaaaacttggttctaa
gccaagggtatggtgcgctcacctgcaatcctagagttcatggattcaag
gccagctctaggcaacttagtgagaccctatctcaaaatcaaaacaaaac
agctgatcctatagtgctgaactgtatcatggctttggatttgaactgca
tgattataaggtaagcgctcttagtgaggagcttacactgtacacttggc
aatagccttaaaggatagtcagcctaagtgtatgtaggctacttggaaca
aatcaatcaaaataattgggaaaatgcaagttttatacccaggaagttaa
atctcccaacaaataaaactgaagatttgatctatagaagtcacgggttt
gtgaatgcattctgtaactctaagatgtactctggggtaactggctacag
tagaggcagcaactacttgcgtcgactctcactgatcctttgaggcccat
aatttaaattatgagattggtttatgtggttt
gaattcactactgggaattgaacatgcaagccaagccctcgaacccacca
ggccacctcacagtttcattcatgatagacatcacttctagatgtggtac
tgcacagccatggtctgggactggcttaattgcaggcctatgtgaagaag
gtgggaccagcatttaccactaagttgagtgtgagaagccagcatgcagc
aaaaaaaaaaaaaaaaaaaaagaaagaaagaaaagcaagtgtgaatgtgt
gggaaattataaatatgttctaaggaaaaggagcatgaaaacactggctg
tcttcagatgctcaaaagagtacttgtgagtttcaaggtaaagttgttca
gctatctggtaaatattgattcttcacttttaatgagccaggcattgtct
taggttccggggacattgtgtaagaaaagcaaagagatacacatgcaaca
catacagctgtggaaatgtctgatgctacatgtagagcctacacatagaa
ccggctagaatgtcactctataatacccttctgcgcgcaccccccttctg
aagaaaggtgcccctctgtctgcccaagcattagaagttgaggaacaggt
ctcacttttccatttaaaacttggatccaacatcagtttttgctacagta
tctggttacagtatcaactcaaaattgccgtctggattgaatgaatgcat
gaatgaatgaatgatggatggatggatggatggatggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6347478_6348634
seq2: B6Ng01-136G20.b_45_1176

seq1  GAATTCATTCGGGGAAGAAACCGTATGAATGTAAGGAATGTCGGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCGGGGAAGAAACCGTATGAATGTAAGGAATGTCGGAAAACC  50

seq1  TTCATCCAGATTGGACACCTTAACCAACATAAGAGAGTCCATACCGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGATTGGACACCTTAACCAACATAAGAGAGTCCATACCGGGGA  100

seq1  GAGAACGTACAACTACAAGAAGGGCAGGAGGGCCTTCAGGCAGACTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGTACAACTACAAGAAGGGCAGGAGGGCCTTCAGGCAGACTGCAC  150

seq1  ACTTTGCTCACCATCAGCAGATTCATTCCGGAAAGTCACCTGCTCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTCACCATCAGCAGATTCATTCCGGAAAGTCACCTGCTCACCAC  200

seq1  TCTTTGCCTTCCACATCGAATCCTGTGGATCTCTTCTCCAAATTCGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCTTCCACATCGAATCCTGTGGATCTCTTCTCCAAATTCGTCTG  250

seq1  GAATCCATCCTCACTGCCATCATCATAACCTCAGAGCCTCGACATTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATCCTCACTGCCATCATCATAACCTCAGAGCCTCGACATTTCCA  300

seq1  CCACGCTCGTTTACCAGCTCGTCTCTCTCTCCCTTTGTTCATTCTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTCGTTTACCAGCTCGTCTCTCTCTCCCTTTGTTCATTCTTGTCC  350

seq1  CTTATGAGTCCTTCATGTTACAACCAGGTTGGATTATTTTTGGAGTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGTCCTTCATGTTACAACCAGGTTGGATTATTTTTGGAGTGTAA  400

seq1  ATGTAATTAATTTGCTCATATAAAGCTTATATTCACTGGTTAATGCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTAATTTGCTCATATAAAGCTTATATTCACTGGTTAATGCCTGA  450

seq1  GATGTGTTTAGCACAGTGCCCGATTCATACCAAGTACTCAGCAAACTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTTAGCACAGTGCCCGATTCATACCAAGTACTCAGCAAACTTGG  500

seq1  GTCTTTTGAAAGTGGAAAATGCATTCTAATCAGCTCTGATGGAAACAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGAAAGTGGAAAATGCATTCTAATCAGCTCTGATGGAAACAATG  550

seq1  CAATAGAATGAGGCTCGGCGCAACCAGCGTTTAGAGCAGGAAGGGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAATGAGGCTCGGCGCAACCAGCGTTTAGAGCAGGAAGGGAGTTC  600

seq1  TCTGAGTTGGTGATGAGGCTTCCTTCTTTTTCTTGAAAACTTGGTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTGGTGATGAGGCTTCCTTCTTTTTCTTGAAAACTTGGTTCTAA  650

seq1  GCCAAGGGTATGGTGCGCTCACCTGCAATCCTAGAGTTCATGGATTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGGTATGGTGCGCTCACCTGCAATCCTAGAGTTCATGGATTCAAG  700

seq1  GCCAGCTCTAGGCAACTTAGTGAGACCCTATCTCAAAATCAAAACAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCTAGGCAACTTAGTGAGACCCTATCTCAAAATCAAAACAAAAC  750

seq1  AGCTGATCCTATAGTGCTGAACTGTATCATGGCTTTGGATTTGAACTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATCCTATAGTGCTGAACTGTATCATGGCTTTGGATTTGAACTGCA  800

seq1  TGATTATAAGGTAAGCGCTCTTAGTGAGGAGCTTACACTGTACACTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAAGGTAAGCGCTCTTAGTGAGGAGCTTACACTGTACACTTGGC  850

seq1  AATAGCCTTAAAGGATAGTCAGCCTAAGTGTATGTAGGCTACTTGGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTTAAAGGATAGTCAGCCTAAGTGTATGTAGGCTACTTGGAACA  900

seq1  AATCAATCAAAATAATTGGGAAAATGCAAGGTTTTATACCCAGGAAGTTA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATCAATCAAAATAATTGGGAAAATGCAA-GTTTTATACCCAGGAAGTTA  949

seq1  AATCTCCCAACAAATAAAACTGAAGGATTTGATCTATAGAAAGTCACGGG  1000
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  AATCTCCCAACAAATAAAACTGAA-GATTTGATCTATAG-AAGTCACGGG  997

seq1  TTTGTGAATGCATTCTTGGTAAACTTCTAAAGAAGTGTTAACTCTGGGGT  1050
      ||||||||||||||||  ||||   ||| |||| ||    ||||||||||
seq2  TTTGTGAATGCATTCT--GTAA--CTCT-AAGATGT----ACTCTGGGGT  1038

seq1  AAACTGAGCTACAGTAGAGGGCAGCAAACTAACTTGCAGTCAGACTCTCA  1100
       ||||| ||||||||||| |||||| |||| |||||| ||| ||||||||
seq2  -AACTG-GCTACAGTAGA-GGCAGC-AACT-ACTTGC-GTC-GACTCTCA  1081

seq1  CTGATTCCTTTTGGAGGGCCCATAATTTAAATTTATGAAGATATGTTTAT  1150
      |||| ||||||  || ||||||||||||||| ||||| ||||  ||||||
seq2  CTGA-TCCTTT--GA-GGCCCATAATTTAAA-TTATG-AGATTGGTTTAT  1125

seq1  GTGGTTT  1157
      |||||||
seq2  GTGGTTT  1132

seq1: chr7_6470769_6471508
seq2: B6Ng01-136G20.g_68_807 (reverse)

seq1  CATCCATCCATCCATCCATCCATCCATCATTCATTCATTCATGCATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATCCATCATTCATTCATTCATGCATTCAT  50

seq1  TCAATCCAGACGGCAATTTTGAGTTGATACTGTAACCAGATACTGTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAGACGGCAATTTTGAGTTGATACTGTAACCAGATACTGTAGCA  100

seq1  AAAACTGATGTTGGATCCAAGTTTTAAATGGAAAAGTGAGACCTGTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATGTTGGATCCAAGTTTTAAATGGAAAAGTGAGACCTGTTCCT  150

seq1  CAACTTCTAATGCTTGGGCAGACAGAGGGGCACCTTTCTTCAGAAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTAATGCTTGGGCAGACAGAGGGGCACCTTTCTTCAGAAGGGGG  200

seq1  GTGCGCGCAGAAGGGTATTATAGAGTGACATTCTAGCCGGTTCTATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCGCAGAAGGGTATTATAGAGTGACATTCTAGCCGGTTCTATGTGT  250

seq1  AGGCTCTACATGTAGCATCAGACATTTCCACAGCTGTATGTGTTGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTACATGTAGCATCAGACATTTCCACAGCTGTATGTGTTGCATGT  300

seq1  GTATCTCTTTGCTTTTCTTACACAATGTCCCCGGAACCTAAGACAATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTTTGCTTTTCTTACACAATGTCCCCGGAACCTAAGACAATGCC  350

seq1  TGGCTCATTAAAAGTGAAGAATCAATATTTACCAGATAGCTGAACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTAAAAGTGAAGAATCAATATTTACCAGATAGCTGAACAACTT  400

seq1  TACCTTGAAACTCACAAGTACTCTTTTGAGCATCTGAAGACAGCCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGAAACTCACAAGTACTCTTTTGAGCATCTGAAGACAGCCAGTGT  450

seq1  TTTCATGCTCCTTTTCCTTAGAACATATTTATAATTTCCCACACATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTCCTTTTCCTTAGAACATATTTATAATTTCCCACACATTCAC  500

seq1  ACTTGCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGCTGCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGCTGCATGCT  550

seq1  GGCTTCTCACACTCAACTTAGTGGTAAATGCTGGTCCCACCTTCTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCACACTCAACTTAGTGGTAAATGCTGGTCCCACCTTCTTCACA  600

seq1  TAGGCCTGCAATTAAGCCAGTCCCAGACCATGGCTGTGCAGTACCACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGCAATTAAGCCAGTCCCAGACCATGGCTGTGCAGTACCACATC  650

seq1  TAGAAGTGATGTCTATCATGAATGAAACTGTGAGGTGGCCTGGTGGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGATGTCTATCATGAATGAAACTGTGAGGTGGCCTGGTGGGTTC  700

seq1  GAGGGCTTGGCTTGCATGTTCAATTCCCAGTAGTGAATTC  740
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTGGCTTGCATGTTCAATTCCCAGTAGTGAATTC  740