BAC Information

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BAC

Clone NameB6Ng01-136I03
Chromosome7 (Build37)7 (Build37)
Map Location 3,311,842 - 3,312,0653,509,624 - 3,510,552
singlet/doubletsingletsinglet
Overlap genePrkcc
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm
Downstream geneCacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I03.bB6Ng01-136I03.g
ACCDH936262DH936263
length225935
definitionDH936262|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I03, 5' end.DH936263|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,311,842 - 3,312,065)(3,509,624 - 3,510,552)
sequence
gattctttggggttttagtttagtttagttttagatccatttattttttt
ctgtgtgagtatgggtgaacatcatgtgtgtaattggtgcccatagaggc
caaaaatggatgtcagttccttggatgtcagactacagagagagactctg
tctcagataaacaaacagacaagccaaaagaaagaaaaggagggagggga
taagtgtgggggagaagaatgtggg
gaattccccagtgtcctgcatagcttctgtctatccctggagtgcaggtt
ggaatgcacaccctgctctaacagaagtggtgagaataagtaaattttag
ggatagaatgaatgtgacattgaaaagatttgtggaattttgaagacatg
agtagcacttaagtattagaagtggaagcagagaggtggcagaggagagt
ctcaggcaacaaaggaggtgctaagctagctgtgggagcatacaaaccct
gaacctatgaactgggggtctgagctcagccagaacctctggggtgctcc
tcagaaccaaggatggtaacgagatgcctctcagcaggcacctgtacctc
attcatgactgttttgtagatctaaatgttgaccaaacagacacggagaa
caacggtaagtgactcaacacacccactctgagctttcatccggaatatt
ctgtttccctcctgggcttcctgggagcaggtgggtgtgtcagatccaga
ctgatttttgcttccctccagatttgcttctcaaacccaggtgcttggcc
caactcagtagcatcagagaatagcaacctgaccctgcagtgcaagagtc
ccatcccgggcatactgcttgtttctcagaaagggagatgttattttgga
ttccaggcgtcacatcatctgacacagaggacagctgagtttcgtctgac
taacctacggctgggaggatgctggatattataccttgtgaatactatcc
aaaggaatccctcttatagaatctcacttcccagtgacagtctcctacta
ttggtcacaggttgaggagagactgcctcaaaactacgacagtgattttc
agaaaaggttgagttttggaaccaagggatggaggtagggaaaaaggagt
gtccatttagggttggtaagaggcttggcttggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3311842_3312065
seq2: B6Ng01-136I03.b_33_256

seq1  ATTCTTTGGGGTTTTAGTTTAGTTTAGTTTTAGATCCATTTATTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGGGTTTTAGTTTAGTTTAGTTTTAGATCCATTTATTTTTTTC  50

seq1  TGTGTGAGTATGGGTGAACATCATGTGTGTAATTGGTGCCCATAGAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTATGGGTGAACATCATGTGTGTAATTGGTGCCCATAGAGGCC  100

seq1  AAAAATGGATGTCAGTTCCTTGGATGTCAGACTACAGAGAGAGACTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGATGTCAGTTCCTTGGATGTCAGACTACAGAGAGAGACTCTGT  150

seq1  CTCAGATAAACAAACAGACAAGCCAAAAGAAAGAAAAGGAGGGAGGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAAACAAACAGACAAGCCAAAAGAAAGAAAAGGAGGGAGGGGAT  200

seq1  AAGTGTGGGGGAGAAGAATGTGGG  224
      ||||||||||||||||||||||||
seq2  AAGTGTGGGGGAGAAGAATGTGGG  224

seq1: chr7_3509624_3510552
seq2: B6Ng01-136I03.g_72_1005

seq1  AATTCCCCAGTGTCCTGCATAGCTTCTGTCTATCCCTGGAGTGCAGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCAGTGTCCTGCATAGCTTCTGTCTATCCCTGGAGTGCAGGTTG  50

seq1  GAATGCACACCCTGCTCTAACAGAAGTGGTGAGAATAAGTAAATTTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACACCCTGCTCTAACAGAAGTGGTGAGAATAAGTAAATTTTAGG  100

seq1  GATAGAATGAATGTGACATTGAAAAGATTTGTGGAATTTTGAAGACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATGAATGTGACATTGAAAAGATTTGTGGAATTTTGAAGACATGA  150

seq1  GTAGCACTTAAGTATTAGAAGTGGAAGCAGAGAGGTGGCAGAGGAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTTAAGTATTAGAAGTGGAAGCAGAGAGGTGGCAGAGGAGAGTC  200

seq1  TCAGGCAACAAAGGAGGTGCTAAGCTAGCTGTGGGAGCATACAAACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAACAAAGGAGGTGCTAAGCTAGCTGTGGGAGCATACAAACCCTG  250

seq1  AACCTATGAACTGGGGGTCTGAGCTCAGCCAGAACCTCTGGGGTGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGAACTGGGGGTCTGAGCTCAGCCAGAACCTCTGGGGTGCTCCT  300

seq1  CAGAACCAAGGATGGTAACGAGATGCCTCTCAGCAGGCACCTGTACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAAGGATGGTAACGAGATGCCTCTCAGCAGGCACCTGTACCTCA  350

seq1  TTCATGACTGTTTTGTAGATCTAAATGTTGACCAAACAGACACGGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTGTTTTGTAGATCTAAATGTTGACCAAACAGACACGGAGAAC  400

seq1  AACGGTAAGTGACTCAACACACCCACTCTGAGCTTTCATCCGGAATATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTAAGTGACTCAACACACCCACTCTGAGCTTTCATCCGGAATATTC  450

seq1  TGTTTCCCTCCTGGGCTTCCTGGGAGCAGGTGGGTGTGTCAGATCCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCTCCTGGGCTTCCTGGGAGCAGGTGGGTGTGTCAGATCCAGAC  500

seq1  TGATTTTTGCTTCCCTCCAGATTTGCTTCTCAAACCCAGGTGCTTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGCTTCCCTCCAGATTTGCTTCTCAAACCCAGGTGCTTGGCCC  550

seq1  AACTCAGTAGCATCAGAGAATAGCAACCTGACCCTGCAGTGCAAGAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTAGCATCAGAGAATAGCAACCTGACCCTGCAGTGCAAGAGTCC  600

seq1  CATCCCGGGCATACTGCTTG-TTCTCAGAAAGGGAGATGTTATTTTGGAT  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATCCCGGGCATACTGCTTGTTTCTCAGAAAGGGAGATGTTATTTTGGAT  650

seq1  TCCAGGCGTCCACATCATCTGACACAGAGGACAGCTGAGTTTCGTCTGAC  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCGT-CACATCATCTGACACAGAGGACAGCTGAGTTTCGTCTGAC  699

seq1  TAACCTACGGCT-GGAGGATGCTGGATATTATACC-TGTGAATACTATCC  747
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TAACCTACGGCTGGGAGGATGCTGGATATTATACCTTGTGAATACTATCC  749

seq1  AAAGGAAT-CCTCTTATAGAATCTCACTTTCCAGTGACAGTCTCTTACTA  796
      |||||||| |||||||||||||||||||| |||||||||||||| |||||
seq2  AAAGGAATCCCTCTTATAGAATCTCACTTCCCAGTGACAGTCTCCTACTA  799

seq1  TTGGTCACAGG-TGAGGAGAGACTGCCTCAGAACGACAGACAGTGATTTT  845
      ||||||||||| |||||||||||||||||| ||| || ||||||||||||
seq2  TTGGTCACAGGTTGAGGAGAGACTGCCTCAAAACTAC-GACAGTGATTTT  848

seq1  CAGAAAAGGGTGAG-TGTGGAACCAAGGGAATGGAGGTAGGG-AAAAGGA  893
      ||||||||| |||| | |||||||||||| |||||||||||| |||||||
seq2  CAGAAAAGGTTGAGTTTTGGAACCAAGGG-ATGGAGGTAGGGAAAAAGGA  897

seq1  GTGT-CATTTAGGGTTGGTGAGAGGGCTTGGC-TGGTA  929
      |||| |||||||||||||| ||| |||||||| |||||
seq2  GTGTCCATTTAGGGTTGGTAAGA-GGCTTGGCTTGGTA  934