BAC Information

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BAC

Clone NameB6Ng01-137D07
Chromosome7 (Build37)
Map Location 148,621,714 - 148,622,802
singlet/doubletsinglet
Overlap geneSlc25a22
Upstream geneOlfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1
Downstream geneLrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137D07.bB6Ng01-137D07.g
ACCDH936781DH936782
length9161,088
definitionDH936781|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D07, 5' end.DH936782|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccccattcctaaccctctacaggaggctttaaaaacaattagaag
atgttttagagtcgttttcagtttacagaaaaactgaactgaaagcatgg
gatttagttccttcatgcccctcacatatgccctagagacaccccccccc
ccctttctgttctggagcagaactcatagagtccttgagctcagagatcc
gtctgcctctcaaatgctggaattaatggcttgcatccccaccccaggct
tgaacccatgtcaccacagcagtatcataaagccctgcagttgtcaccag
gggccactttggggttgtcattctattggtttgggcagtgtaaactgtca
tggatccagttccatagtatcaaacgcagtagggttgcagccctgaacag
tccctgtggaaccgtaatccttttgcccgtagactcctgaccttgtcact
gagctggtgtcagcgttggaagcatcgcttgcgtccttttcaccacggct
tctaaatttcagaaattacattcacctgtgtgtggttgggtaggtgggcg
ggtgcatggaagtcagagggcagcctatagagtgtgcctttctccttcct
tgtgggttccaggcatcttaactcaggtgggcaggttttggcagcacggg
cctttacccactgagccatcttgccagacccacactggcctctttcattt
ggcattaatcatttacatctgctttgaatcttttcatggctcagtagctc
ggttctttctagggcttagcaacgttccactgttttgaatggaccagtgt
gtttatccattcacccagtgaaggacatctgtattgtctccaagttcagg
caactataaataaagctgctgtaaatgtgtgtgtgcatgtgcgtgtgtcc
gtgtgcgtgtgtgtgt
gaattctctatagaccaagttgtctttgaactcacagacagccacctgcc
tctgcctcagagggctgggattaaaggagggagcctccagtgtcaccagc
atttcttttaggtaggaaacaggcagctttattcatgaaaattgaggaag
aaactgtatggagctgttagcctctgtatgctaacggggcttttctcagt
tggcctgtggcctgacaggggaagaaggcagaaagctctggatcctcagt
ggcctgactggacaatcaggtttctatggtaacatagacagcatcgaggg
agccctgacatgtgtctcaaactgatgagaattaaagaacacacacacaa
cacacacaagccaggagtggtggtggcacatgcctttaatcccagcactc
aagaggcagaggcaggcagatctctgactttgaggtctacatgttctaca
cagtgagttcaaccagagcaatcttgtctcaaaaaatcctatatcaaaac
caaactctttgggtgggggaggcgggaaacagaccagacggttccctttg
tgtggtgctccaggcagcagaacccctttgctctcagctcagcaactgtt
ctctctggtgtcccgcctgttttgtttagttcagggtacagggctgacta
agccctggggatctcagtgcctacctggctcttccccatggacttcagac
tgtctgtctgacttccaggatacacacaatacccaagtccccaggtcgca
gatatgtaggagatagcatctcagggacagcagactgaaggtagaggcat
aaggaaggatggggctttctcctaaagatggagtagcggagagctgctgt
atctagttttacactttggagcatggcgtgggagagcaagaagtcagact
acagttcaaatgttcaggcctgccgcacacacaagggctaggagggacag
gcacttcttccattgagacccctcgtatgcagagttcagagggcacctgg
agtaccgcctcatgctccctggttccaaaagtgagcaggacctgctgtgc
ttgttgtgtggctttgagggtaagcatctcttcttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148621714_148622802
seq2: B6Ng01-137D07.g_69_1156 (reverse)

seq1  GACAAGGAAGGGATGCTTGACCCTCAAAGGCCACCACCACCAAGCACAGC  50
      ||||| |||| ||||||| ||||||||| |||||   || ||||||||||
seq2  GACAA-GAAGAGATGCTT-ACCCTCAAA-GCCAC--ACAACAAGCACAGC  45

seq1  AGGCCCTGCTCACCTTTTGGGACCAGAGAGCATGGAGGCGGTACTCCAGG  100
      ||| |||||||| ||||||| ||||| |||||| ||||||||||||||||
seq2  AGGTCCTGCTCA-CTTTTGGAACCAGGGAGCAT-GAGGCGGTACTCCAGG  93

seq1  TGCCCTCTGACCTCTGCATACGAGGGGTCTCAATGGAAG-AGTGCCTGTC  149
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TGCCCTCTGAACTCTGCATACGAGGGGTCTCAATGGAAGAAGTGCCTGTC  143

seq1  CCTCCTAGCCCTTGTGTGTGGCGCAGGCCTG-ACCTTTGAACTGTAGTCT  198
      ||||||||||||||||||||  ||||||||| || |||||||||||||||
seq2  CCTCCTAGCCCTTGTGTGTGCGGCAGGCCTGAACATTTGAACTGTAGTCT  193

seq1  GACTTCTTGCTCT-CCACGCCATGCTCC-AAGTGT-AAACTAGATACAGC  245
      ||||||||||||| |||||||||||||| |||||| ||||||||||||||
seq2  GACTTCTTGCTCTCCCACGCCATGCTCCAAAGTGTAAAACTAGATACAGC  243

seq1  AGCTCTCCGCTACTCCATCTTTAGGAG-AAGCCCCATCCTTCCTTATGCC  294
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCTCTCCGCTACTCCATCTTTAGGAGAAAGCCCCATCCTTCCTTATGCC  293

seq1  TCTACCTTCAGTCTGCTGTCCCTGAGATGCTATCTCCTACATATCTGCGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTCAGTCTGCTGTCCCTGAGATGCTATCTCCTACATATCTGCGA  343

seq1  CCTGGGGACTTGGGTATTGTGTGTATCCTGGAAGTCAGACAGACAGTCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACTTGGGTATTGTGTGTATCCTGGAAGTCAGACAGACAGTCTG  393

seq1  AAGTCCATGGGGAAGAGCCAGGTAGGCACTGAGATCCCCAGGGCTTAGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATGGGGAAGAGCCAGGTAGGCACTGAGATCCCCAGGGCTTAGTC  443

seq1  AGCCCTGTACCCTGAACTAAACAAAACAGGCGGGACACCAGAGAGAACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTACCCTGAACTAAACAAAACAGGCGGGACACCAGAGAGAACAG  493

seq1  TTGCTGAGCTGAGAGCAAAGGGGTTCTGCTGCCTGGAGCACCACACAAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGCTGAGAGCAAAGGGGTTCTGCTGCCTGGAGCACCACACAAAG  543

seq1  GGAACCGTCTGGTCTGTTTCCCGCCTCCCCCACCCAAAGAGTTTGGTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGTCTGGTCTGTTTCCCGCCTCCCCCACCCAAAGAGTTTGGTTTT  593

seq1  GATATAGGATTTTTTGAGACAAGATTGCTCTGGTTGAACTCACTGTGTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGGATTTTTTGAGACAAGATTGCTCTGGTTGAACTCACTGTGTAG  643

seq1  AACATGTAGACCTCAAAGTCAGAGATCTGCCTGCCTCTGCCTCTTGAGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAGACCTCAAAGTCAGAGATCTGCCTGCCTCTGCCTCTTGAGTG  693

seq1  CTGGGATTAAAGGCATGTGCCACCACCACTCCTGGCTTGTGTGTGTTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGCATGTGCCACCACCACTCCTGGCTTGTGTGTGTTGTG  743

seq1  TGTGTGTTCTTTAATTCTCATCAGTTTGAGACACATGTCAGGGCTCCCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCTTTAATTCTCATCAGTTTGAGACACATGTCAGGGCTCCCTC  793

seq1  GATGCTGTCTATGTTACCATAGAAACCTGATTGTCCAGTCAGGCCACTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTCTATGTTACCATAGAAACCTGATTGTCCAGTCAGGCCACTGA  843

seq1  GGATCCAGAGCTTTCTGCCTTCTTCCCCTGTCAGGCCACAGGCCAACTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGAGCTTTCTGCCTTCTTCCCCTGTCAGGCCACAGGCCAACTGA  893

seq1  GAAAAGCCCCGTTAGCATACAGAGGCTAACAGCTCCATACAGTTTCTTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCCCGTTAGCATACAGAGGCTAACAGCTCCATACAGTTTCTTCC  943

seq1  TCAATTTTCATGAATAAAGCTGCCTGTTTCCTACCTAAAAGAAATGCTGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTCATGAATAAAGCTGCCTGTTTCCTACCTAAAAGAAATGCTGG  993

seq1  TGACACTGGAGGCTCCCTCCTTTAATCCCAGCCCTCTGAGGCAGAGGCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGGAGGCTCCCTCCTTTAATCCCAGCCCTCTGAGGCAGAGGCAG  1043

seq1  GTGGCTGTCTGTGAGTTCAAAGACAACTTGGTCTATAGAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCTGTGAGTTCAAAGACAACTTGGTCTATAGAGAATTC  1088