BAC Information

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BAC

Clone NameB6Ng01-137E23
Chromosome7 (Build37)17 (Build37)
Map Location 116,845,846 - 116,846,37556,883,335 - 56,883,650
singlet/doubletsingletsinglet
Overlap geneLOC100042582
Upstream geneOlfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
Downstream geneD930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137E23.bB6Ng01-137E23.g
ACCDH936859DH936860
length984267
definitionDH936859|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E23, 5' end.DH936860|Mus musculus domesticus DNA, BAC clone: B6Ng01-137E23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,845,846 - 116,846,375)(56,883,335 - 56,883,650)
sequence
gaattctcagtccttaagtagtgtgaatagagaaacatttgcccacaaac
ctagctacctgagattccttgaaatccatgccagaagccaggatctgtag
tgtgcatctgtcagccctaccctgcaacagtgacataagaggtgaggaca
ggaaattggctagaactcctggactagacaccttgaattatatagtctag
cagtagcaacaagcaagaccctgccttacacatggcagaaggtgagaacg
gactcccaaaagttgtcctcagacctccatacactttctttggcacacat
gtactacattcacacacataaaaaatgagtaaaaagtagtctagttctta
ttgatgaatgattctcacttcaacttcaggatctaggtagcctctattct
gattgacatccccataaatttgcctttttctggcgattcatacaaataaa
atcatatggtatgtggccctttggaccggtctctttcatttagattactt
tgaggcttgtctgagttatagtatatagtacattgtcatccctttttatg
gataaataatattccattatatgaatatactgtattttgtttattcatca
cttggaactatttccatcctggaggcctattctgataatgcattctaaga
ctaaatattttcatttctcttgagcagaaactttgaagtaaaaattttga
gagtattataaatttatatttacatgatatgaaactgccaggctgttatt
caaagttgctgcacagttttatattcccacaactggccgcttttccgtgt
ccactctagcgtttgttgcctttttgtgttgcagtccttctcctgctggt
gtgagtatgaagtgacagtctctggggcttcagttaggatttccatagtg
accggtactgctgtagaccgtttcttgttatttctagctgttcctatgtg
ccctttgctgaaatacctggtccaatcctttgtc
tctgagttcgaggccagcctggtctacagagtgagttccaggatagccag
ggatacacagagaaaccctgtctcaaaaagaaaaggaaagaaagaaagag
agagagagagagagagagagagagagagagagagagagagagagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggag
agagagagagagagagagagagagagagaaaggaaggaaggaaggaagga
aggaaggaaggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116845846_116846375
seq2: B6Ng01-137E23.b_46_575 (reverse)

seq1  TACTATATACTATAACTCAGACAAGCCTCAAAGTAATCTAAATGAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATACTATAACTCAGACAAGCCTCAAAGTAATCTAAATGAAAGAG  50

seq1  ACCGGTCCAAAGGGCCACATACCATATGATTTTATTTGTATGAATCGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTCCAAAGGGCCACATACCATATGATTTTATTTGTATGAATCGCCA  100

seq1  GAAAAAGGCAAATTTATGGGGATGTCAATCAGAATAGAGGCTACCTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGCAAATTTATGGGGATGTCAATCAGAATAGAGGCTACCTAGAT  150

seq1  CCTGAAGTTGAAGTGAGAATCATTCATCAATAAGAACTAGACTACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTTGAAGTGAGAATCATTCATCAATAAGAACTAGACTACTTTTT  200

seq1  ACTCATTTTTTATGTGTGTGAATGTAGTACATGTGTGCCAAAGAAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTTTTATGTGTGTGAATGTAGTACATGTGTGCCAAAGAAAGTGT  250

seq1  ATGGAGGTCTGAGGACAACTTTTGGGAGTCCGTTCTCACCTTCTGCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTCTGAGGACAACTTTTGGGAGTCCGTTCTCACCTTCTGCCATG  300

seq1  TGTAAGGCAGGGTCTTGCTTGTTGCTACTGCTAGACTATATAATTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCAGGGTCTTGCTTGTTGCTACTGCTAGACTATATAATTCAAGG  350

seq1  TGTCTAGTCCAGGAGTTCTAGCCAATTTCCTGTCCTCACCTCTTATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTCCAGGAGTTCTAGCCAATTTCCTGTCCTCACCTCTTATGTCA  400

seq1  CTGTTGCAGGGTAGGGCTGACAGATGCACACTACAGATCCTGGCTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGGGTAGGGCTGACAGATGCACACTACAGATCCTGGCTTCTGG  450

seq1  CATGGATTTCAAGGAATCTCAGGTAGCTAGGTTTGTGGGCAAATGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTCAAGGAATCTCAGGTAGCTAGGTTTGTGGGCAAATGTTTCT  500

seq1  CTATTCACACTACTTAAGGACTGAGAATTC  530
      ||||||||||||||||||||||||||||||
seq2  CTATTCACACTACTTAAGGACTGAGAATTC  530

seq1: chr17_56883335_56883650
seq2: B6Ng01-137E23.g_73_339 (reverse)

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  50
                  ||||||||||||||||||||||||||||||||||||||
seq2  ------------TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  38

seq1  CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTTTCTCTCTT  100
                            || |||||||||||||||| ||||||| 
seq2  ----------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTC  66

seq1  TCTCTCTTTCTTTCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTTC  150
      |||| |||||||||| ||||            ||||||||||||||||||
seq2  TCTCCCTTTCTTTCTTTCTT------------TCTTTCTTTCTTTCTTTC  104

seq1  TTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTC  200
      ||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||
seq2  TTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  154

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCGAGACAGG  250
      | ||| ||| ||| |||||||||||||| |  ||||||| | ||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTTTCTTTCCT--TTTCTTT-TTGAGACAGG  201

seq1  GTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCCCTCTGTAGACCAGGC  300
      ||||||||||||| |||||||| ||||||||||| |||||||||||||||
seq2  GTTTCTCTGTGTATCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGC  251

seq1  TGACCTCAAACTCAGA  316
      || |||| ||||||||
seq2  TGGCCTCGAACTCAGA  267