BAC Information

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BAC

Clone NameB6Ng01-137M17
Chromosome7 (Build37)
Map Location 125,573,636 - 125,574,752
singlet/doubletsinglet
Overlap geneSyt17
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339
Downstream geneLOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137M17.bB6Ng01-137M17.g
ACCDH937217DH937218
length1,1021,193
definitionDH937217|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M17, 5' end.DH937218|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgacctggggctgcctcacagaggcacgttgcttggtttgtg
gagagagttatgtgcttaaggatcaaacgcagagcattgtgcttgctaag
tgtgtaccctttcccgtgagccatgtcacatcccaatggcacacaggttc
accagcgtggggacaagaggactgtcctgttagctgtgtgtgtatgtgtt
tgtctttcaagatggatatctgcccctttcttcatatggattccccaaga
agaaggccccaagggaaggcacatcatttatcagggagatgccaccaatt
ggaaacaccaggagggatttggaacgtcagaaagagtgtgtgatgtgcat
atcaacacaatgggccattgtctggtacttaaacttgccagggacatagg
attttgtgcaaggcacacataggagcccagtgttgttcatccacagaact
gttaagtgaaggctattgagaactgggagcttaactccctggcagttttg
gtctgtggtcctagtaggtaagagacctctgatgcccatcgtgggaggtg
gcatccagactcaggtctttgaagcagggaggacaaggagagggcaggca
gggtacagggactgtcgtgagtctggcttcagaccatagatactttctct
gggtgagtcttccctcttgcattgccatcaggacctgctgggtacttcct
gcatctaaggcgatagcaggaccattgatgtccaaagcattaccccattt
cagccactcagaagtttacaattggggcatgggggagagttccgtcttac
caaactcaaacagcatccttcatcgaaaaccctggagaagcagagaattg
tttgacacccacataccccaacccggaggtcttgctctgtgttcatttcc
cttccagcatggtcctccaggagtcatgctgtggcctgctccccacccct
ccctctctttcttcctcactccctcttctcattctctctttcccaatccc
tttctctctcctcccccatcctttctcctccgtcctatgagctggtaggc
aggctccctgcttgcattggacctagatacaaggcttgctctagcaagag
ca
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggag
tccccgccctgcgtagtgcgtcagcaatgcgcagagagatgcgcagagag
gcagtgcgcagactcattcattcccagagaggaacaaaggaaaatacaac
aggcatttccggtctttgaaggagccgagggtgggcgtgtccacgctccg
gtagaatacttacaaattaaagaaattgccgagtcggtccgtaaatacgg
aaccaatgctaattttaccttggtgcagttagacaggcttgccggcatgg
cactaactcctgctgactggcaaacggttgtaaaagccgctctccctagt
atgggcaaatatatggaatggagagcgctttggcacgaagctgcacaagc
gcaggcccgagcaaacgcagctgctttgactccagagcagagagattgga
cttttgacttgttaacgggtcagggagcttattctgctgatcagacaaac
taccattggggagcttatgcccagatttcttccacggctattagggcctg
gaaggcgctctctcgagcaggtgaaaccactggtcagttaacaaagataa
tccagggacctcaggaatccttctcagattttgtggccagaatgacagag
gcagcagagcgtatttttggagagtcagagcaagctgcgcctctgataga
acagctaatctatgagcaagccacaaaggagtgccgagcggccatagccc
caagaaagaacaaaggcttacagactggctcaggtctgtcgagagcttgg
gggactctcagcatgcaggttagcggctgcatctcatctcaacgctcatg
ggcagaataatcagaggacatgttttaatgcgaaagctgggcattttaag
aagatgcagagcttcagataacaggagggactcctactctttgctctagg
gtggcagggttatcataaagcgaacaggttccctctgtgatataaaggca
gtcctccccactgtagctaatcgctagtgcaacgtctcgctgtccaggct
aaatgaacgggtgttgagactggactctgaaggcggaccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125573636_125574752
seq2: B6Ng01-137M17.b_48_1149 (reverse)

seq1  TGCTCTTTGCTAAGAGCAAAGCCCTCTGTATCTGGGTTCAAATGCCAGCA  50
      ||||| ||||| ||||| |||||   ||||||| || || ||||| ||||
seq2  TGCTC-TTGCT-AGAGC-AAGCC--TTGTATCTAGG-TCCAATGCAAGCA  44

seq1  GGGAAGCCTTGGCTACCAGCTTCATAGGACGGAGGAGGAAAGGATGGGGA  100
      ||| |||| || |||||||| ||||||||||||||| ||||||||||   
seq2  GGG-AGCC-TGCCTACCAGC-TCATAGGACGGAGGA-GAAAGGATGG---  87

seq1  GGGAAGGAAGAGAAAGGGATTGGGAAAGAGAGAATGGAGAGAGGGAGGTG  150
      |||| |  ||||||||||||||||||||||||||||   ||||||| |||
seq2  GGGAGGAGAGAGAAAGGGATTGGGAAAGAGAGAATGAGAAGAGGGA-GTG  136

seq1  AGGGAGGAAGAGAGGGAGGGGTGGGGAGCAGGCCACAGCATGACTCCTGG  200
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGAGAGGGAGGGGTGGGGAGCAGGCCACAGCATGACTCCTGG  186

seq1  AGGACCATGCTGGAAGGGAAATGAACACAGAGCAAGACCTCCGGGTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATGCTGGAAGGGAAATGAACACAGAGCAAGACCTCCGGGTTGGG  236

seq1  GTATGTGGGTGTCAAACAATTTCTCTGCTTCTCCAGGGTTTTCGATGAAG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTATGTGGGTGTCAAACAA-TTCTCTGCTTCTCCAGGGTTTTCGATGAAG  285

seq1  GATGCTGTTTGAGTTTGGTAAGACGGAACTCTCCCCCATGCCCCAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTTGAGTTTGGTAAGACGGAACTCTCCCCCATGCCCCAATTGT  335

seq1  AAACTTCTGAGTGGCTGAAATGGGGTAATGCTTTGGACATCAATGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGAGTGGCTGAAATGGGGTAATGCTTTGGACATCAATGGTCCT  385

seq1  GCTATCGCCTTAGATGCAGGAAGTACCCAGCAGGTCCTGATGGCAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCGCCTTAGATGCAGGAAGTACCCAGCAGGTCCTGATGGCAATGCA  435

seq1  AGAGGGAAGACTCACCCAGAGAAAGTATCTATGGTCTGAAGCCAGACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGACTCACCCAGAGAAAGTATCTATGGTCTGAAGCCAGACTCA  485

seq1  CGACAGTCCCTGTACCCTGCCTGCCCTCTCCTTGTCCTCCCTGCTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGTCCCTGTACCCTGCCTGCCCTCTCCTTGTCCTCCCTGCTTCAAA  535

seq1  GACCTGAGTCTGGATGCCACCTCCCACGATGGGCATCAGAGGTCTCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGTCTGGATGCCACCTCCCACGATGGGCATCAGAGGTCTCTTAC  585

seq1  CTACTAGGACCACAGACCAAAACTGCCAGGGAGTTAAGCTCCCAGTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGACCACAGACCAAAACTGCCAGGGAGTTAAGCTCCCAGTTCTC  635

seq1  AATAGCCTTCACTTAACAGTTCTGTGGATGAACAACACTGGGCTCCTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTTCACTTAACAGTTCTGTGGATGAACAACACTGGGCTCCTATG  685

seq1  TGTGCCTTGCACAAAATCCTATGTCCCTGGCAAGTTTAAGTACCAGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTGCACAAAATCCTATGTCCCTGGCAAGTTTAAGTACCAGACAA  735

seq1  TGGCCCATTGTGTTGATATGCACATCACACACTCTTTCTGACGTTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATTGTGTTGATATGCACATCACACACTCTTTCTGACGTTCCAAA  785

seq1  TCCCTCCTGGTGTTTCCAATTGGTGGCATCTCCCTGATAAATGATGTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTGGTGTTTCCAATTGGTGGCATCTCCCTGATAAATGATGTGCC  835

seq1  TTCCCTTGGGGCCTTCTTCTTGGGGAATCCATATGAAGAAAGGGGCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGGGGCCTTCTTCTTGGGGAATCCATATGAAGAAAGGGGCAGAT  885

seq1  ATCCATCTTGAAAGACAAACACATACACACACAGCTAACAGGACAGTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTTGAAAGACAAACACATACACACACAGCTAACAGGACAGTCCT  935

seq1  CTTGTCCCCACGCTGGTGAACCTGTGTGCCATTGGGATGTGACATGGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCCACGCTGGTGAACCTGTGTGCCATTGGGATGTGACATGGCTC  985

seq1  ACGGGAAAGGGTACACACTTAGCAAGCACAATGCTCTGCGTTTGATCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAAAGGGTACACACTTAGCAAGCACAATGCTCTGCGTTTGATCCTT  1035

seq1  AAGCACATAACTCTCTCCACAAACCAAGCAACGTGCCTCTGTGAGGCAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATAACTCTCTCCACAAACCAAGCAACGTGCCTCTGTGAGGCAGC  1085

seq1  CCCAGGTCACTGAATTC  1117
      |||||||||||||||||
seq2  CCCAGGTCACTGAATTC  1102