BAC Information

Click to search

BAC

Clone NameB6Ng01-137N06
Chromosome7 (Build37)
Map Location 89,084,806 - 89,235,383
singlet/doubletdoublet
Overlap geneBnc1
Upstream geneSec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N06.bB6Ng01-137N06.g
ACCDH937241DH937242
length1,1721,097
definitionDH937241|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N06, 5' end.DH937242|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,234,192 - 89,235,383)(89,084,806 - 89,085,925)
sequence
gaattcactcttgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggcccgcgccatcttataatggcgattgctcgcggcacacacggct
ctcctcagagattactggcggcacacatgcgattgctcgcagcacgtacc
ggctttccacaaacattctgtgttactactatgctggacagcttcaggaa
atgccactgattggtgcagaaggggtgaatttcttgcattcgcctgttag
ggccatgtttctaggtttgttgataaacagaaagagaagggccaaggaag
gagaaggaacagacagtattgaaggatagttgctgtcgctggatctcaag
agaggctcaatccagactgaggtgtgagaatagccaaatgtgtctacagt
aagtagggaagggagtagataaaccccttaaatgcaatgcaaggatgtcg
ggaaaattattcacaaacacctaaaaactgaaacctgtgtttgaattcaa
acaagactccctgttcttcccaagcatgggttagccttcaaacctgcaca
cagctgggcttccttcccatggcacaggaaaagatacaggaaacagttgg
aagtgacagaggtgaccttgcaggtagatccctgacatgggttggcttgt
cacaagtctagtctgggctcctgagcctgacaaagcatctcagatgtgga
caagccctgtggttggcctctgaacctggatccaagaggtctgcagtcac
ccccaggactgactgttctgcatattttattaatatactttctctctccc
ttactgtgcagtcaagatgctcaaaacaaattgattttatcagagtcagc
tagcaaagagaaaaaaaagtgtgattggaatgaactacataattcagctc
tgagggatgccagcctgcatgggctaggccagtctcttcctcttgctctt
gccttgaggcaagtcttccagcaggagtgcatctcccactcccctcctca
gcagccaacctcaccgctgcaggctaccatctatttcaaagagttgagaa
gtttgtcctcaggaaggaggaaaatctttcatgcagttttgtctttttat
gtccagcactctatctgcactattgaccatttgggctagaatatcctctg
tgccacgaggagtgaatgtctg
gaattcataaaaaggtggcagtggagatgattcagaggttaagagagcta
gctgctttcagagagaacctgagtttgattcccagcattcacaggacagc
tcacaaccatctgccacttcagtaccaggggatctgacaccctcttctgg
cctctatgggtaccaggaaaacatgtggacacagacatatccagacaaca
cccccatgcatatgaatcaacttagctataaatatttttgaagaattcct
aaggaggactgagaggatgcctcagtgaataatgggcttgttgaacaagc
atgtggaacagagtttggatccctagacccatggaaaggctgggtacatt
tggtgtcttgtctgtagttacaatgcctctaaggtatgtttgcagggtag
cgatggatcccctgagagacccatccttgatgaatgttgcagtggaagca
aggaatactctcaccatcagccttgggcaaccacatgcatgcacatacac
tttcatgtgcacccacacacagaatacacacacggggaactcatgaggat
tatgaaaatgtatatattcaatccaaaacatggagtggggagggctggag
aagtgagtcagcagttaagatcacttgttgctcttacagaggagctaggt
tcatttcccagaatccacaggcagctcacaatcttctgtaactccaatcc
caggggatccaacaccctcttctggtctcagcactcactgtacacacatg
tggtatggacatacatgcaggcaaaccaccgataaacataaaatacaaat
aaaggttgacatttttaaaaaatcacagtagcccatagtttttatgcagg
gattaaaactttaaatgaggctgaagggctactcaggagttaagagttgc
tagtgctcatgaagaggacatgagcctgttacttaaactccagataatct
gatgtctctggtctccatggttacctgcactcagttagccacgacccctc
gacccttcagacacacaaccctacctcccctccctccatttaaattctta
aaacacaggattgtatgatggaataagaggtctcatttcttaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89234192_89235383
seq2: B6Ng01-137N06.b_47_1218 (reverse)

seq1  CAGACACTTTTCACTCCCTGTGGCCACAGAGGATTATCTAGCCCAAAATG  50
      ||||||   ||||||||  |||| ||||||||||  |||||||||||  |
seq2  CAGACA---TTCACTCCTCGTGG-CACAGAGGATATTCTAGCCCAAATGG  46

seq1  TCAATAGTGCCAGGATTGAGGAGTGCTGG-CAT-AAAAGACAAAAACTGC  98
      ||||||||||   |||    ||||||||| ||| ||||||| ||||||||
seq2  TCAATAGTGC--AGAT---AGAGTGCTGGACATAAAAAGAC-AAAACTGC  90

seq1  ATGAAAGATTTTTTTCTTTTCTTTTCTTTTAGGACAAAACTCCTCAACTC  148
      ||||||||||||  || || |       | ||||| ||||| ||||||||
seq2  ATGAAAGATTTTCCTCCTTCC-------TGAGGAC-AAACTTCTCAACTC  132

seq1  TTTGAAATAGGATGTGTAGCCTGCAGC-GTGAGGTTGGGCCTGCTGAGGA  197
      ||||||||| |||| |||||||||||| ||||||||||  ||||||||||
seq2  TTTGAAATA-GATG-GTAGCCTGCAGCGGTGAGGTTGG--CTGCTGAGGA  178

seq1  GGGGAGTGGGAAGATGCACTCCTGCTGGAAGACTTGCCCTCAAGGC-AGA  246
      |||||||||| ||||||||||||||||||||||||| ||||||||| |||
seq2  GGGGAGTGGG-AGATGCACTCCTGCTGGAAGACTTG-CCTCAAGGCAAGA  226

seq1  GCAAGAGGAAGAGACTGGCCTAGCCCATGCAGGCTGGCATCCCTCAGAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGAAGAGACTGGCCTAGCCCATGCAGGCTGGCATCCCTCAGAGC  276

seq1  TGAATTATGTAGTTCATTCCAATCACACTTTTTTTTCTCTTTGCTAGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATGTAGTTCATTCCAATCACACTTTTTTTTCTCTTTGCTAGCTG  326

seq1  ACTCTGATAAAATCAATTTGTTTTGAGCATCTTGACTGCACAGTAAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATAAAATCAATTTGTTTTGAGCATCTTGACTGCACAGTAAGGGA  376

seq1  GAGAGAAAGTATATTAATAAAATATGCAGAACAGTCAGTCCTGGGGGTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGTATATTAATAAAATATGCAGAACAGTCAGTCCTGGGGGTGA  426

seq1  CTGCAGACCTCTTGGATCCAGGTTCAGAGGCCAACCACAGGGCTTGTCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACCTCTTGGATCCAGGTTCAGAGGCCAACCACAGGGCTTGTCCA  476

seq1  CATCTGAGATGCTTTGTCAGGCTCAGGAGCCCAGACTAGACTTGTGACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGATGCTTTGTCAGGCTCAGGAGCCCAGACTAGACTTGTGACAA  526

seq1  GCCAACCCATGTCAGGGATCTACCTGCAAGGTCACCTCTGTCACTTCCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCCATGTCAGGGATCTACCTGCAAGGTCACCTCTGTCACTTCCAA  576

seq1  CTGTTTCCTGTATCTTTTCCTGTGCCATGGGAAGGAAGCCCAGCTGTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTGTATCTTTTCCTGTGCCATGGGAAGGAAGCCCAGCTGTGTG  626

seq1  CAGGTTTGAAGGCTAACCCATGCTTGGGAAGAACAGGGAGTCTTGTTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGAAGGCTAACCCATGCTTGGGAAGAACAGGGAGTCTTGTTTGA  676

seq1  ATTCAAACACAGGTTTCAGTTTTTAGGTGTTTGTGAATAATTTTCCCGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACACAGGTTTCAGTTTTTAGGTGTTTGTGAATAATTTTCCCGAC  726

seq1  ATCCTTGCATTGCATTTAAGGGGTTTATCTACTCCCTTCCCTACTTACTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCATTGCATTTAAGGGGTTTATCTACTCCCTTCCCTACTTACTG  776

seq1  TAGACACATTTGGCTATTCTCACACCTCAGTCTGGATTGAGCCTCTCTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACATTTGGCTATTCTCACACCTCAGTCTGGATTGAGCCTCTCTTG  826

seq1  AGATCCAGCGACAGCAACTATCCTTCAATACTGTCTGTTCCTTCTCCTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCGACAGCAACTATCCTTCAATACTGTCTGTTCCTTCTCCTTC  876

seq1  CTTGGCCCTTCTCTTTCTGTTTATCAACAAACCTAGAAACATGGCCCTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCCTTCTCTTTCTGTTTATCAACAAACCTAGAAACATGGCCCTAA  926

seq1  CAGGCGAATGCAAGAAATTCACCCCTTCTGCACCAATCAGTGGCATTTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGAATGCAAGAAATTCACCCCTTCTGCACCAATCAGTGGCATTTCC  976

seq1  TGAAGCTGTCCAGCATAGTAGTAACACAGAATGTTTGTGGAAAGCCGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGTCCAGCATAGTAGTAACACAGAATGTTTGTGGAAAGCCGGTA  1026

seq1  CGTGCTGCGAGCAATCGCATGTGTGCCGCCAGTAATCTCTGAGGAGAGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGCGAGCAATCGCATGTGTGCCGCCAGTAATCTCTGAGGAGAGCC  1076

seq1  GTGTGTGCCGCGAGCAATCGCCATTATAAGATGGCGCGGGCCTCCGCTGT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCGCGAGCAATCGCCATTATAAGATGGCGCGGGCCTCCGCTGT  1126

seq1  GCCTAACTAGTAAACAAGCCTTGTACGCAGGTGCAAGAGTGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTAGTAAACAAGCCTTGTACGCAGGTGCAAGAGTGAATTC  1172

seq1: chr7_89084806_89085925
seq2: B6Ng01-137N06.g_67_1163

seq1  GAATTCATAAAAAGGTGGCAGTGGAGATGATTCAGAGGTTAAGAGAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAAAGGTGGCAGTGGAGATGATTCAGAGGTTAAGAGAGCTA  50

seq1  GCTGCTTTCAGAGAGAACCTGAGTTTGATTCCCAGCATTCACAGGACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCAGAGAGAACCTGAGTTTGATTCCCAGCATTCACAGGACAGC  100

seq1  TCACAACCATCTGCCACTTCAGTACCAGGGGATCTGACACCCTCTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTGCCACTTCAGTACCAGGGGATCTGACACCCTCTTCTGG  150

seq1  CCTCTATGGGTACCAGGAAAACATGTGGACACAGACATATCCAGACAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGGGTACCAGGAAAACATGTGGACACAGACATATCCAGACAACA  200

seq1  CCCCCATGCATATGAATCAACTTAGCTATAAATATTTTTGAAGAATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGCATATGAATCAACTTAGCTATAAATATTTTTGAAGAATTCCT  250

seq1  AAGGAGGACTGAGAGGATGCCTCAGTGAATAATGGGCTTGTTGAACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGACTGAGAGGATGCCTCAGTGAATAATGGGCTTGTTGAACAAGC  300

seq1  ATGTGGAACAGAGTTTGGATCCCTAGACCCATGGAAAGGCTGGGTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAACAGAGTTTGGATCCCTAGACCCATGGAAAGGCTGGGTACATT  350

seq1  TGGTGTCTTGTCTGTAGTTACAATGCCTCTAAGGTATGTTTGCAGGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTTGTCTGTAGTTACAATGCCTCTAAGGTATGTTTGCAGGGTAG  400

seq1  CGATGGATCCCCTGAGAGACCCATCCTTGATGAATGTTGCAGTGGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGATCCCCTGAGAGACCCATCCTTGATGAATGTTGCAGTGGAAGCA  450

seq1  AGGAATACTCTCACCATCAGCCTTGGGCAACCACATGCATGCACATACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACTCTCACCATCAGCCTTGGGCAACCACATGCATGCACATACAC  500

seq1  TTTCATGTGCACCCACACACAGAATACACACACGGGGAACTCATGAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGCACCCACACACAGAATACACACACGGGGAACTCATGAGGAT  550

seq1  TATGAAAATGTATATATTCAATCCAAAACATGGAGTGGGGAGGGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATGTATATATTCAATCCAAAACATGGAGTGGGGAGGGCTGGAG  600

seq1  AAGTGAGTCAGCAGTTAAGATCACTTGTTGCTCTTACAGAGGAGCTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTCAGCAGTTAAGATCACTTGTTGCTCTTACAGAGGAGCTAGGT  650

seq1  TCATTTCCCAGAATCCACAGGCAGCTCACAATCTTCTGTAACTCCAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCCAGAATCCACAGGCAGCTCACAATCTTCTGTAACTCCAATCC  700

seq1  CAGGGGATCCAACACCCTCTTCTGGTCTCAGCACTCACTGTACACACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATCCAACACCCTCTTCTGGTCTCAGCACTCACTGTACACACATG  750

seq1  TGGTATGGACATACATGCAGGCAAACCACCGATAAACATAAAATACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGACATACATGCAGGCAAACCACCGATAAACATAAAATACAAAT  800

seq1  AAAGGTTGACATTTTTAAAAAAATCACAGTAGCCCATAGTTTTTTATGCA  850
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAAGGTTGACATTTTT-AAAAAATCACAGTAGCCCATAG-TTTTTATGCA  848

seq1  GGGATTAAAACTTTAAATGAGGCTGAAGGGTCTACTCAGGAGTTAAGAGT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGATTAAAACTTTAAATGAGGCTGAAGGG-CTACTCAGGAGTTAAGAGT  897

seq1  GGCTAGTGCTCATGAAGAGGACATGAGCCTGTAACTTAAACTCCAGATAA  950
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTAGTGCTCATGAAGAGGACATGAGCCTGTTACTTAAACTCCAGATAA  947

seq1  TCTGATGTCTCTGGTCTCCATGGTTACCTGCACTCAGGTAAGCACACAGA  1000
      ||||||||||||||||||||||||||||||||||||| ||  |||   ||
seq2  TCTGATGTCTCTGGTCTCCATGGTTACCTGCACTCAGTTAGCCAC---GA  994

seq1  CACACACAGACACATACAGACAAACAAACAAACACATACACACACACACA  1050
      | | | | ||| | | |||||| |||| |  ||       | | | | | 
seq2  C-CCCTC-GAC-CCTTCAGACACACAACCCTAC-------CTC-CCCTCC  1033

seq1  CACAATTTAAAAATCTTAAAAAACACAGGATTGTAATGAATGGAATAAAG  1100
      | | |||| ||| ||||  ||||||||||||||| ||| ||||||| |||
seq2  CTCCATTT-AAATTCTT--AAAACACAGGATTGT-ATG-ATGGAAT-AAG  1077

seq1  AGGTCTACATTCTTAATATA  1120
      ||||||   |||||||||||
seq2  AGGTCTCATTTCTTAATATA  1097