BAC Information

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BAC

Clone NameB6Ng01-138E24
Chromosome7 (Build37)7 (Build37)
Map Location 5,303,566 - 5,304,6859,606,372 - 9,606,609
singlet/doubletsingletsinglet
Overlap geneEG272350
Upstream geneGp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2
Downstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138E24.bB6Ng01-138E24.g
ACCDH937608DH937609
length1,118238
definitionDH937608|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E24, 5' end.DH937609|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,303,566 - 5,304,685)(9,606,372 - 9,606,609)
sequence
gaattctgaggaatcacttagagccaggatctggagcacgattcagtctg
ccattaaagaagaaattttgtaaaaaacgaatgttactctacgtgatcca
aactttgcttgttctgaatgttctgcgatttatttgtgagacaggctctc
actatgcagcccccactgtcctaaaactcaccatgtagagccggctgatc
tcaagcacaccgagatccacctgctgatgtttcctgagtgctgggataaa
acacgtgctctgccatgcccaaacctgagcgttcctctagacaaggcctt
tctttgtagtctaagctcatctaagcacacactgtagctcaggctagcct
ccaattcatggcaatcctcttgcctcagcctcctgagtgcaaggcatgat
tcatcatgccagcttagttctgaaacatttgctcagttctgcaatgcttt
tgaacttaaacttaaacttttcagtgattcagtgatccgttttccatatg
catttttgaaaagttcgtactttttgcttttgtgttggcaatcaatactt
ttacgtggcaggcaggtttgtgctatctttgagttacatcccaggcctca
ggtgatcccttctgtggcagaattaaggaagagtgaaccttattactctg
tcaaatcaatttggcccctttcagatatttcttctcttttgagtcctgag
tttttacaaagtcaggtgaacaacttcatcatgtccctttgggatcttag
catgcatgactccattttgcttttagcttggctcattggaatccatgatg
agtcttatgaattttatttaacaatttattatccttgtgtagttctatac
acaaagtcacatttatgtgagcatatgatgtcccttggtgcatacctcat
ataaccaactgccatctcattatttccagacaatttttcttcccatttaa
cctcactagtacatacatgagcttatacagttttaatgaaaacacaggtt
aaattcccataatttcttatagactgataaattaaggtaatctgggtatt
ttataggttctatttattttctgcattcattagttggtgtgtgtgctggt
gtgcacatgtgtcatcct
aaatattaagattactttctcattgttattgaatgtttggaaagtaaact
ctgagggactaaatgcactgacgagtctacatcaggagacacatgtcttc
agctggatatgttgcagagaattgccttctcttacattactggaagggta
gctgcttggttctatggaggcttgatgacacagggtaaggaatgatagga
tgctgaggagtagtatatgggagggtggcagagcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5303566_5304685
seq2: B6Ng01-138E24.b_44_1161

seq1  GAATTCTGAGGAATCACTTAGAGCCAGGATCTGGAGCACGATTCAGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGAATCACTTAGAGCCAGGATCTGGAGCACGATTCAGTCTG  50

seq1  CCATTAAAGAAGAAATTTTGTAAAAAACGAATGTTACTCTACGTGATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAAGAAGAAATTTTGTAAAAAACGAATGTTACTCTACGTGATCCA  100

seq1  AACTTTGCTTGTTCTGAATGTTCTGCGATTTATTTGTGAGACAGGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCTTGTTCTGAATGTTCTGCGATTTATTTGTGAGACAGGCTCTC  150

seq1  ACTATGCAGCCCCCACTGTCCTAAAACTCACCATGTAGAGCCGGCTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAGCCCCCACTGTCCTAAAACTCACCATGTAGAGCCGGCTGATC  200

seq1  TCAAGCACACCGAGATCCACCTGCTGATGTTTCCTGAGTGCTGGGATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCACACCGAGATCCACCTGCTGATGTTTCCTGAGTGCTGGGATAAA  250

seq1  ACACGTGCTCTGCCATGCCCAAACCTGAGCGTTCCTCTAGACAAGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGCTCTGCCATGCCCAAACCTGAGCGTTCCTCTAGACAAGGCCTT  300

seq1  TCTTTGTAGTCTAAGCTCATCTAAGCACACACTGTAGCTCAGGCTAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGTCTAAGCTCATCTAAGCACACACTGTAGCTCAGGCTAGCCT  350

seq1  CCAATTCATGGCAATCCTCTTGCCTCAGCCTCCTGAGTGCAAGGCATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCATGGCAATCCTCTTGCCTCAGCCTCCTGAGTGCAAGGCATGAT  400

seq1  TCATCATGCCAGCTTAGTTCTGAAACATTTGCTCAGTTCTGCAATGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGCCAGCTTAGTTCTGAAACATTTGCTCAGTTCTGCAATGCTTT  450

seq1  TGAACTTAAACTTAAACTTTTCAGTGATTCAGTGATCCGTTTTCCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAAACTTAAACTTTTCAGTGATTCAGTGATCCGTTTTCCATATG  500

seq1  CATTTTTGAAAAGTTCGTACTTTTTGCTTTTGTGTTGGCAATCAATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGAAAAGTTCGTACTTTTTGCTTTTGTGTTGGCAATCAATACTT  550

seq1  TTACGTGGCAGGCAGGTTTGTGCTATCTTTGAGTTACATCCCAGGCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGGCAGGCAGGTTTGTGCTATCTTTGAGTTACATCCCAGGCCTCA  600

seq1  GGTGATCCCTTCTGTGGCAGAATTAAGGAAGAGTGAACCTTATTACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCCCTTCTGTGGCAGAATTAAGGAAGAGTGAACCTTATTACTCTG  650

seq1  TCAAATCAATTTGGCCCCTTTCAGATATTTCTTCTCTTTTGAGTCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAATTTGGCCCCTTTCAGATATTTCTTCTCTTTTGAGTCCTGAG  700

seq1  TTTTTACAAAGTCAGGTGAACAACTTCATCATGTCCCTTTGGGATCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAAGTCAGGTGAACAACTTCATCATGTCCCTTTGGGATCTTAG  750

seq1  CATGCATGACTCCATTTTGCTTTTAGCTTGGCTCATTGGAATCCATGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGACTCCATTTTGCTTTTAGCTTGGCTCATTGGAATCCATGATG  800

seq1  AGTCTTATGAATTTTATTTAACAATTTATTATCCTTGTGTAGTTCTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATGAATTTTATTTAACAATTTATTATCCTTGTGTAGTTCTATAC  850

seq1  ACAAAGTCACATTTATGTGAGCATATGATGT-CCTTGGTGCATACCTCAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAAAGTCACATTTATGTGAGCATATGATGTCCCTTGGTGCATACCTCAT  900

seq1  ATAACCAACTGCCATCTCATTTATTTCCAGACAATTTTTCTTCCCATTTA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAACCAACTGCCATCTCA-TTATTTCCAGACAATTTTTCTTCCCATTTA  949

seq1  ACCTCACTAGTACATACATGAGCTTATACAGTTATAATGAAAACACAGGT  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTCACTAGTACATACATGAGCTTATACAGTTTTAATGAAAACACAGGT  999

seq1  TAAATTCCCATTAATTTTCTTTATAAGACTGATAAATTAAGTTAATCTGG  1049
      |||||||||| ||||||   |||| |||||||||||||||| ||||||||
seq2  TAAATTCCCA-TAATTT--CTTAT-AGACTGATAAATTAAGGTAATCTGG  1045

seq1  GTA-TTTATA-GTTCTATTTATTTTCCTGCAATTTCATTTGTTTGTGTGT  1097
      ||| |||||| |||||||||||||| |||||  |||||| ||| ||||||
seq2  GTATTTTATAGGTTCTATTTATTTT-CTGCA--TTCATTAGTTGGTGTGT  1092

seq1  GTG--TGTGTGCATGTGT-TAATCCT  1120
      |||   |||||||  ||| | |||||
seq2  GTGCTGGTGTGCACATGTGTCATCCT  1118

seq1: chr7_9606372_9606609
seq2: B6Ng01-138E24.g_71_308

seq1  AAATATTAAGATTACTTTCTCATTGTTATTGAATGTTTGGAAAGTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAGATTACTTTCTCATTGTTATTGAATGTTTGGAAAGTAAACT  50

seq1  CTGAGGGACTAAATCCACTGAAGAGTCTACATCAGGAGACACATGTATTC  100
      |||||||||||||| |||||| |||||||||||||||||||||||| |||
seq2  CTGAGGGACTAAATGCACTGACGAGTCTACATCAGGAGACACATGTCTTC  100

seq1  AGCTGGATATGTTGCAGAGAATTGCCTTCTCTTACATTACTGGAAGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATATGTTGCAGAGAATTGCCTTCTCTTACATTACTGGAAGGGTA  150

seq1  GATGCTTGGTTCTATGGAGGCTTGATGACACAGGGTAAGGAATGATAGGA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGGTTCTATGGAGGCTTGATGACACAGGGTAAGGAATGATAGGA  200

seq1  TGCTGAGGAGTAGTATATGGGAGGGTGGCAGAGCACTC  238
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGAGTAGTATATGGGAGGGTGGCAGAGCACTC  238