BAC Information

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BAC

Clone NameB6Ng01-138I21
Chromosome7 (Build37)
Map Location 144,183,344 - 144,284,152
singlet/doubletdoublet
Overlap geneMgmt
Upstream geneLOC546009, EG621677, EG668771
Downstream geneEG621804, Ebf3, 9430038I01Rik, Txnl2, LOC435235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I21.bB6Ng01-138I21.g
ACCDH937783DH937784
length1,1521,077
definitionDH937783|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I21, 5' end.DH937784|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,183,344 - 144,184,516)(144,283,063 - 144,284,152)
sequence
gaattccaggtcccatttacctccgtctgatgctgtttggcccatccttg
gatgttagaattagcctttgtcatctgtcttcccagagcataatttttca
aaaagctatgatcccacgatgcaggtctcaacctcagttgttggtgatca
aaatagccaggcaggctagcattgtgtatctgttagactccctctcatcc
aaaggcctgacacctgcctgccagccatttcttgcttggcatcatctctt
tgatatatacaataggtttaaagtaaaaaatagagttcactttatagaca
ctttgagcatgttccgtaaagtgtaatgtgtttctatggctctttcctgg
aaaagtgcctaaagcccggggtgtgcatggtctgagcacttcagtttgga
attttcattcattagatggcccactcagcactatttaaattctaataaag
aggctggacacattgtgagcaaatttgcctgtatcatttgtgaatctcca
tcagagcaaaagaagagtctctccctatctttcaatgaatagtttttagc
catggaattgctggcagaggcaagaaagtatgaatcttatttttgtggat
ctagccaggaaggagaacgtaaactttgaaaagtgtgtcatttaccattc
acagtctaatgaaaaactgagagaggctaggaactctctataaaaattcc
gatatcagcatttaggacacatcgagagagggtacacagcatttaaggga
atcacagtcgccagtttacaggcactctaaacgctgtgaatcttgtgctg
gcaatcacaatctggattttattaccaaaaaggacccccttatgaggaat
atgctggtgccgtgtgcaggttagcaaacagaaatgctgtctcctccttc
ccagctgaaggaagaaaggggctcaattatccttgccagtgcaaagggcc
cttgctcccacaagatggctactctgtcaaaatttctgaaactgatagta
gtgaacctgaatgactgcgaatcagaagtgatctggtcagcagcatttgt
ggaaccagagggctgggcagctgagcaggtaagcagctagggtcagggac
atgatactccctgcagaaaaagctggtagcgctcggttctacatgatgaa
cc
gaattccatatattctgaaatttaattaaaaccccaaagatttcaaatta
gatgcaatttgaaatgcctggggcagaaatacatgcacttgcgtggcgag
ggtatcacactgaaagctgataccgtaattggtcttgatgtatttttgtg
ttgctgggctgaagcacagaactcataaccatataaaaattctctgtaga
ttacctgctcattgaaaatgccatcactcaggtaggcctctactaaatta
ccatgctactaaaatgcacaaagtgattcggagagtacagtggcacagct
ggtcgacgctgccaatgagttatgcatgcgtcaacgctgccttttttctt
agtaaaatatgctcagttgaatattaaaatataattggcattcaacctaa
gtagcttaaaccattttgttatcttcttttaaaccgatttggctcctcca
cagttattttcaagaatgcgactcacaaactaatgatagcatcgcattcg
gctaggtttgtgctgtgttacatttgtcataaatgggtatggcttccgca
gcctgccagggctggcctttaatattcgctgctcttgaacatcaaaggcc
caattcttggggaagggaagggggatatgccatttatgttcgttcttgca
tattttattctgagaggaggaaagagatacgaatttctatgaaaagtgtg
tcttggctgcaataagccgggctgtcaccctggctcagttgctcagtctt
cctaaagccatttacttaaggaagggctcaagaggaatagcacactgctt
ggaggggtgggaagggtcagcggagcccagcccaagcaggaatgtttgct
tatttatttaaggcagacaaactcacatgtgaatcatactcaagtttatg
aatgggttcctttatacatacgccatttgtgccctaattacagtggtagt
ccaaaaaaaaaaaagttgtaacatagtaacagagcagctatgttcacact
ggctgagggcaggctcacctgcgacttccgatgcttgctcgatgacttac
tctgtgagagaaccctccagtgatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_144183344_144184516
seq2: B6Ng01-138I21.b_45_1196

seq1  GAATTCCAGGTCCCATTTACCTCCGTCTGATGCTGTTTGGCCCATCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCCCATTTACCTCCGTCTGATGCTGTTTGGCCCATCCTTG  50

seq1  GATGTTAGAATTAGCCTTTGTCATCTGTCTTCCCAGAGCATAATTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGAATTAGCCTTTGTCATCTGTCTTCCCAGAGCATAATTTTTCA  100

seq1  AAAAGCTATGATCCCACGATGCAGGTCTCAACCTCAGTTGTTGGTGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTATGATCCCACGATGCAGGTCTCAACCTCAGTTGTTGGTGATCA  150

seq1  AAATAGCCAGGCAGGCTAGCATTGTGTATCTGTTAGACTCCCTCTCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCAGGCAGGCTAGCATTGTGTATCTGTTAGACTCCCTCTCATCC  200

seq1  AAAGGCCTGACACCTGCCTGCCAGCCATTTCTTGCTTGGCATCATCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTGACACCTGCCTGCCAGCCATTTCTTGCTTGGCATCATCTCTT  250

seq1  TGATATATACAATAGGTTTAAAGTAAAAAATAGAGTTCACTTTATAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATACAATAGGTTTAAAGTAAAAAATAGAGTTCACTTTATAGACA  300

seq1  CTTTGAGCATGTTCCGTAAAGTGTAATGTGTTTCTATGGCTCTTTCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCATGTTCCGTAAAGTGTAATGTGTTTCTATGGCTCTTTCCTGG  350

seq1  AAAAGTGCCTAAAGCCCGGGGTGTGCATGGTCTGAGCACTTCAGTTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCCTAAAGCCCGGGGTGTGCATGGTCTGAGCACTTCAGTTTGGA  400

seq1  ATTTTCATTCATTAGATGGCCCACTCAGCACTATTTAAATTCTAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTCATTAGATGGCCCACTCAGCACTATTTAAATTCTAATAAAG  450

seq1  AGGCTGGACACATTGTGAGCAAATTTGCCTGTATCATTTGTGAATCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGACACATTGTGAGCAAATTTGCCTGTATCATTTGTGAATCTCCA  500

seq1  TCAGAGCAAAAGAAGAGTCTCTCCCTATCTTTCAATGAATAGTTTTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAAAAGAAGAGTCTCTCCCTATCTTTCAATGAATAGTTTTTAGC  550

seq1  CATGGAATTGCTGGCAGAGGCAAGAAAGTATGAATCTTATTTTTGTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATTGCTGGCAGAGGCAAGAAAGTATGAATCTTATTTTTGTGGAT  600

seq1  CTAGCCAGGAAGGAGAACGTAAACTTTGAAAAGTGTGTCATTTACCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGGAAGGAGAACGTAAACTTTGAAAAGTGTGTCATTTACCATTC  650

seq1  ACAGTCTAATGAAAAACTGAGAGAGGCTAGGAACTCTCTATAAAAATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTAATGAAAAACTGAGAGAGGCTAGGAACTCTCTATAAAAATTCC  700

seq1  GATATCAGCATTTAGGACACATCGAGAGAGGGTACACAGCATTTAAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGCATTTAGGACACATCGAGAGAGGGTACACAGCATTTAAGGGA  750

seq1  ATCACAGTCGCCAGTTTACAGGCACTCTAAACGCTGTGAATCTTGTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTCGCCAGTTTACAGGCACTCTAAACGCTGTGAATCTTGTGCTG  800

seq1  GCAATCACAATCTGGATTTTATTACCAAAAAGGACCCCCTTATGAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACAATCTGGATTTTATTACCAAAAAGGACCCCCTTATGAGGAAT  850

seq1  ATGCTGGTGCCGTGTGCAGGTTAGCAAACAGAAATGCTGTCTCCTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGCTGGTGCCGTGTGCAGGTTAGCAAACAGAAATGCTGTCTCCTCCTT-  899

seq1  CCCAGCTGAAGGAAGAAAGGGGCTCAATTATCCTTGCCAGTGCAAAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGAAGGAAGAAAGGGGCTCAATTATCCTTGCCAGTGCAAAGGGC  949

seq1  CCTTGCTCCCACAAGAATGGCTACTCTGTCCAAAAATTTCTGAAAACTGT  1000
      ||||||||||||||| ||||||||||||||  |||||||||| |||||| 
seq2  CCTTGCTCCCACAAG-ATGGCTACTCTGTC--AAAATTTCTG-AAACTG-  994

seq1  ATAGTAGTTGAAACCTGAATGAACTGCGAATCAGACAGTGATTCTGGTCA  1050
      ||||||||   |||||||||| ||||||||||||| ||||| ||||||||
seq2  ATAGTAGT--GAACCTGAATG-ACTGCGAATCAGA-AGTGA-TCTGGTCA  1039

seq1  GCAAGCATTTGTGGACACCAGAGGGGCTGGGCAGCTGAGCAGGGTAAAGC  1100
      || |||||||||||| |||||| ||||||||||||||||||||   ||||
seq2  GC-AGCATTTGTGGA-ACCAGA-GGGCTGGGCAGCTGAGCAGG--TAAGC  1084

seq1  AGCTAGGGTCAGGGGACATGATACTCCCCGCAGAAGAAAGGCTGGGTAGC  1150
      ||||||||||| |||||||||||||||| |||||  ||| ||| ||||||
seq2  AGCTAGGGTCA-GGGACATGATACTCCCTGCAGA--AAAAGCT-GGTAGC  1130

seq1  GCTCTGTTTCTACATGATGAACC  1173
      |||| | ||||||||||||||||
seq2  GCTC-GGTTCTACATGATGAACC  1152

seq1: chr7_144283063_144284152
seq2: B6Ng01-138I21.g_66_1142 (reverse)

seq1  CAGATCACCTGAGGGTTCTCTTTCACCAGAGT-AGTCATTCGGGCAAGCA  49
      ||||||||  ||||||||||  ||| |||||| ||||| ||| |||||||
seq2  CAGATCACTGGAGGGTTCTC--TCA-CAGAGTAAGTCA-TCGAGCAAGCA  46

seq1  TCGGGAAGTCGCAGGTGAGCCCTGCCCCTCAGCCAGTGTGAACATAGCTG  99
      || |||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TC-GGAAGTCGCAGGTGAG-CCTG-CCCTCAGCCAGTGTGAACATAGCTG  93

seq1  CTCTGTTACTATGGTAACAACTTTTTTTTTTTTTGGACTACCACTGTTAA  149
      |||||||||||| || ||||| |||||||||||||||||||||||| |||
seq2  CTCTGTTACTAT-GTTACAAC-TTTTTTTTTTTTGGACTACCACTG-TAA  140

seq1  TTAGGGCACAAAT-GCGTATTGTATAAAGGGAACCCATTCATAAACTTGG  198
      ||||||||||||| ||||| |||||||| |||||||||||||||||||| 
seq2  TTAGGGCACAAATGGCGTA-TGTATAAA-GGAACCCATTCATAAACTTGA  188

seq1  GTATGATTTCACATGTGAGTTTTGTCTGCCTTTAAATAAATAAGCAAACA  248
      |||||| |||||||||||| |||||||||| |||||||||||||||||||
seq2  GTATGA-TTCACATGTGAG-TTTGTCTGCC-TTAAATAAATAAGCAAACA  235

seq1  TTCCTGCTTGGGCTGGGCTCCGCTGACCCTTCCCACCCCTCCAAGCAGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTGGGCTGGGCTCCGCTGACCCTTCCCACCCCTCCAAGCAGTG  285

seq1  TGCTATTCCTCTTGAGCCCTTCCTTAAGTAAATGGCTTTAGGAAGACTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCCTCTTGAGCCCTTCCTTAAGTAAATGGCTTTAGGAAGACTGA  335

seq1  GCAACTGAGCCAGGGTGACAGCCCGGCTTATTGCAGCCAAGACACACTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAGCCAGGGTGACAGCCCGGCTTATTGCAGCCAAGACACACTTT  385

seq1  TCATAGAAATTCGTATCTCTTTCCTCCTCTCAGAATAAAATATGCAAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAATTCGTATCTCTTTCCTCCTCTCAGAATAAAATATGCAAGAA  435

seq1  CGAACATAAATGGCATATCCCCCTTCCCTTCCCCAAGAATTGGGCCTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACATAAATGGCATATCCCCCTTCCCTTCCCCAAGAATTGGGCCTTTG  485

seq1  ATGTTCAAGAGCAGCGAATATTAAAGGCCAGCCCTGGCAGGCTGCGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAGAGCAGCGAATATTAAAGGCCAGCCCTGGCAGGCTGCGGAAG  535

seq1  CCATACCCATTTATGACAAATGTAACACAGCACAAACCTAGCCGAATGCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCATTTATGACAAATGTAACACAGCACAAACCTAGCCGAATGCG  585

seq1  ATGCTATCATTAGTTTGTGAGTCGCATTCTTGAAAATAACTGTGGAGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCATTAGTTTGTGAGTCGCATTCTTGAAAATAACTGTGGAGGAG  635

seq1  CCAAATCGGTTTAAAAGAAGATAACAAAATGGTTTAAGCTACTTAGGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCGGTTTAAAAGAAGATAACAAAATGGTTTAAGCTACTTAGGTTG  685

seq1  AATGCCAATTATATTTTAATATTCAACTGAGCATATTTTACTAAGAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAATTATATTTTAATATTCAACTGAGCATATTTTACTAAGAAAAA  735

seq1  AGGCAGCGTTGACGCATGCATAACTCATTGGCAGCGTCGACCAGCTGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCGTTGACGCATGCATAACTCATTGGCAGCGTCGACCAGCTGTGC  785

seq1  CACTGTACTCTCCGAATCACTTTGTGCATTTTAGTAGCATGGTAATTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACTCTCCGAATCACTTTGTGCATTTTAGTAGCATGGTAATTTAG  835

seq1  TAGAGGCCTACCTGAGTGATGGCATTTTCAATGAGCAGGTAATCTACAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCCTACCTGAGTGATGGCATTTTCAATGAGCAGGTAATCTACAGA  885

seq1  GAATTTTTATATGGTTATGAGTTCTGTGCTTCAGCCCAGCAACACAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTATATGGTTATGAGTTCTGTGCTTCAGCCCAGCAACACAAAAA  935

seq1  TACATCAAGACCAATTACGGTATCAGCTTTCAGTGTGATACCCTCGCCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAGACCAATTACGGTATCAGCTTTCAGTGTGATACCCTCGCCAC  985

seq1  GCAAGTGCATGTATTTCTGCCCCAGGCATTTCAAATTGCATCTAATTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCATGTATTTCTGCCCCAGGCATTTCAAATTGCATCTAATTTGA  1035

seq1  AATCTTTGGGGTTTTAATTAAATTTCAGAATATATGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGGGGTTTTAATTAAATTTCAGAATATATGGAATTC  1077