BAC Information

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BAC

Clone NameB6Ng01-138N12
Chromosome7 (Build37)
Map Location 5,629,886 - 5,630,460
singlet/doubletsinglet
Overlap genenone
Upstream gene1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2
Downstream geneLOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N12.bB6Ng01-138N12.g
ACCDH937986DH937987
length1,193914
definitionDH937986|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N12, 5' end.DH937987|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttgtaatggggttatttggct
ttctgaagtccaccttcttgagttttttatatataatggatattagtccc
ctatctgatttaagataagtaaagatcctttcccaatctgttggtggcct
ttttgttttattaaaggtgtcttttgccttacagaagctttgcagtttta
agaggtcccatttgtcaattctcgatgttatagcacaagccattgctgtt
ctattcaggaattttccccctgtgcccatattttccaggcttttcctcac
tttctcctctataagtttcagtgtctctggttttatgtggagctttttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattccc
attcttctacatgataactgccagttgtgccagcaccatttgttgaaaat
gctatcttttttctactggatggttttagttcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttttgggtcttcaaatctattccatttg
tgtacttgtctgtcgctattccagtaccatgtagtttttatcacaattgc
tctatagtacagctttaggtcagacatggtgattccaccggaggttcttt
tatccttgagaagagtttttgctatcctagattttttgttattccagatg
aatctgccgattgccctttctaattcgttgaggaattgagttggaattta
atgggaattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatcttaccatcctt
tgagatcttctttaatttctttcttcagagacttgaagttcttatcattc
agatctttcacttcattagttagagtcatgccaggtattgtgtatttttg
tgactaatgagagggtttgtttccctatttctttctcagctgttatcttt
tgtagagaaggcattgacttgttgagtatttacattcagctacttcctga
gctgtttatcagttaagagttctatggagtttagggtcccttaatatact
atcatccgcaaggatttgactcctcttccaatgatccggaatccttatgg
aatgtctgtcgatcagtcatgtaaagagtagtaatgtcagatc
gaattcagccatgagctttgttatttcctgccatctactcttcttgggtg
tgtttctatcttttatctaaaggtttcaggagtactattaagttgctagt
atgcaatctttctagtttggggctgagactgaaggaaagaccatccagag
actgccccacccggggatgcattccctaaacaaccacgaaaacccagaca
ccaacaagattttactgacaggaccctgatatagctgtctcctgtgaggc
ttcgccagtgcataacaaatacagaagtttatgctcacagtcattggatg
caaaacagggtcctcaatgaaggaggtagagaaagtacccaaggagctga
agggttctacagacctataagaggaacaactatatgaactaaccagtact
cccagagctcctgtctctagctgcatatggcctattaggccataagtggg
agaagaggcccttggtcttgcgaagaatctatcccccagtataggggaat
gccatggccaggaagcagggatgggtgtgttgggaaccagggaaatggag
agggtatagtggattttcagagagaaatctaggaaaggagatagcatttg
aaatgtaaatgaagaaaacatctaataaaaataaatgtgaaaaatataaa
aagaataatcacactaaaattcacagagagaaatttagaaaaaaaggagc
ttaaaaaggggggcataaggggttgcatagatcctcctgtagagggaaat
agtagagattgtgcatttgaactataagcaagtatacagaggaaaatggg
gaatcatattggagaaagatgactgaagagagagacagagacatagagta
agggagagagacagatgcatggaattgggggaatttggggagtgatgtaa
aaacctattacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5629886_5630460
seq2: B6Ng01-138N12.g_215_772

seq1  GAGACTGCCCCACCCGGGGATGCATCCCCTAAACAACCATGAAAACCCAG  50
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GAGACTGCCCCACCCGGGGATGCATTCCCTAAACAACCACGAAAACCCAG  50

seq1  ACACCAACAAGATTTTGCTGACAGGACCCTGATATAGCTGTCTCCTGTGA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACACCAACAAGATTTTACTGACAGGACCCTGATATAGCTGTCTCCTGTGA  100

seq1  GGCTTTGCCAGCGCATAACAAATACAGAAGTGTATGCTCACAGTCACTGG  150
      ||||| ||||| ||||||||||||||||||| |||||||||||||| |||
seq2  GGCTTCGCCAGTGCATAACAAATACAGAAGTTTATGCTCACAGTCATTGG  150

seq1  ATGC-AAACAGGGTCCCCTGTGAAGGAGGTAGAGAAAGTACCCAAGGAGC  199
      |||| ||||||||||| |  ||||||||||||||||||||||||||||||
seq2  ATGCAAAACAGGGTCCTCAATGAAGGAGGTAGAGAAAGTACCCAAGGAGC  200

seq1  TGAAGGGTTCTACAGACCTATAGGAGGAACAACAATATTAACTAACCAGT  249
      |||||||||||||||||||||| |||||||||| |||| |||||||||||
seq2  TGAAGGGTTCTACAGACCTATAAGAGGAACAACTATATGAACTAACCAGT  250

seq1  ACTCCCTGAGCTCCTGTCTCTAGGGGCATATGTAGCAGAAGATGGCCTAG  299
      |||||| ||||||||||||||||  ||||            |||||||| 
seq2  ACTCCCAGAGCTCCTGTCTCTAGCTGCAT------------ATGGCCTAT  288

seq1  TCAGCCATCAGTGGGAGGAGAGGCTCTTGGTCTTGCGAAGAATCTATCCT  349
      |  ||||| |||||||| |||||| |||||||||||||||||||||||| 
seq2  TAGGCCATAAGTGGGAGAAGAGGCCCTTGGTCTTGCGAAGAATCTATCCC  338

seq1  CCAGTATAGGGGAATGCCATGGCCAGTAAGCAGGAGTTGGGTGCGTTGGA  399
      |||||||||||||||||||||||||| ||||||| | |||||| ||||| 
seq2  CCAGTATAGGGGAATGCCATGGCCAGGAAGCAGG-GATGGGTGTGTTGGG  387

seq1  AACCACAGAAATGAAGAGGGTATAGTGGATTTTCAGAGAGAAATCTAGGA  449
      |||||  |||||| ||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGAAATGGAGAGGGTATAGTGGATTTTCAGAGAGAAATCTAGGA  437

seq1  AGGGGAATAGCATTTGAAATGTAAATGAAGAAAACATCTAATAAAAAATA  499
      | ||  |||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGGAGATAGCATTTGAAATGTAAATGAAGAAAACATCTAAT-AAAAATA  486

seq1  AATGTGAAAAATATAAAAAGAATAATCATACTACAATTCACAGTGAGAAG  549
      |||||||||||||||||||||||||||| |||| ||||||||| ||    
seq2  AATGTGAAAAATATAAAAAGAATAATCACACTAAAATTCACAGAGA----  532

seq1  GAAGCTTAGAAAAAAGAGAGCTTAAA  575
      |||  ||||||||||  |||||||||
seq2  GAAATTTAGAAAAAAAGGAGCTTAAA  558