BAC Information

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BAC

Clone NameB6Ng01-138P14
Chromosome7 (Build37)
Map Location 5,684,055 - 5,685,136
singlet/doubletsinglet
Overlap genenone
Upstream geneSuv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627
Downstream geneLOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138P14.bB6Ng01-138P14.g
ACCDH938079DH938080
length1,1061,075
definitionDH938079|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P14, 5' end.DH938080|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttagttctgtactcgatttttttttttttatggggttatttga
ttttctggaatccagcttcttcagttctctgaatatattggatattagtc
ctctatcatatttaggattgttaaagatcctttcctaatctgtttgtggc
ctttttgtcttatcgacaatggcttttgctttacagctttacagaagctt
tgcaattttatcatgtctcacttctcgattctcagtcttacagcacaagc
tatagttgttctgttcaggaattcttcccctgtacccatatctttgaggc
ttttccctactttctcctgtatgagttttagtgtctctgagtttatgtgg
agttccttgatccacttagacttgagctttgtaaaaggagataagaatgg
atcaatgagcatttttctacttggtaactgccagttgtgccacaccattt
gttgaaaatgctgttctttttccacaggatggttttaattcctttgtcaa
agatcaagtgaccataggtgtgtgggttcatttctgggtcttcaattcta
ttccattgatctacctgtctgtagctgtaccagtaccatgcagttttttg
tttattattattattttttatatcacaattgctgtgtagtatagcttgag
gtcaggcatggtgattctaccagatattcattgattgttgagagtagttt
ttgctatcctaggtttttagttattccagatgaatttgcaaattgccctt
tcgaactttgtgaagaattgaattttaatgggggaattttaatggggatt
gcattgaatctgtagattgcttttgggcaggatagccatttttactacct
tatgctgccaatccatgagcaatggagggagagttctcttttttccatat
ccttgcctgcatctgctgtcaacttgaattttgatctaggcattttgact
ggtgtggaggtggatctcagggttgttttgattggcattccctggtgata
agacgtggacacttttcagtgcttcctcagccattcgtattctcagtgga
gaattcttggttagttcgtgtactcatttaaatgggatatattgaattcc
ggaggt
gaattcagtttggaggttcctcagaaaagtagacatagtactaccagagg
acccagctatagcacatgtgggtgtatatttttttaaatgcaccaaagtt
taacaaggacacatgctccactatgttcatagcagtcttatttatagtag
ccaaagctgaaaagaaccaagatatccctcaacagaggaatggatagaga
aaatatggtatatttatgcaatggaatactactcaactattaaaaataac
gacttcatgaaattcttaggcaaatggatggagctagaaaatacaatctg
agtgaagaaacccaatcacataagaacacaaatgatatacattcatgggt
aaatggatattagcccagaatcttaatcattgagccatttctctagcctc
agaattagcattttcagaagcttaagattcaattaaaattttttctataa
tttttattttacattgctctatttggagctgtagttattcttttcacata
tttagtgaaagatttgtttaaactctgggtgatctttgtaaatctctcca
atctttaggtatttgatgatttttttctggcctagttattacatatctct
tttacatatggtgaatgtaagccatagattgttattgctccattaaatct
ttgtaaatcttttgcctctgtggttcactactcaaaattttgataactta
ctggaacctcttcacttggttctaattccaatatcaggactggaaaaatc
ctttaaatttttttttggacacacactgcctgtttgcagactgtgggaag
ccatttcggactactggccagcccggacagaaatctgtgccaggcagtaa
acagccaatattttggtggatggctcgctcttaatccctgattggctgag
caagcctgcctggtgaggtgatgtgacttgtggtgattggttgaggcgtg
ttgtggtttgagtgcataaaaacgcttgtaccccgaggtttgggggattt
gaagaaaaagtcaactgcattagagaccggtggtttggttttcttgctgg
tcgagttggatgcaacacaacttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5684055_5685136
seq2: B6Ng01-138P14.g_70_1144

seq1  GAATTCAGTTTGGAGGTTCCTCAGAAAAGTAGACATAGTACTACCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGGAGGTTCCTCAGAAAAGTAGACATAGTACTACCAGAGG  50

seq1  ACCCAGCTATAGCACATGTGGGTGTATATTTTTTTAAATGCACCAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTATAGCACATGTGGGTGTATATTTTTTTAAATGCACCAAAGTT  100

seq1  TAACAAGGACACATGCTCCACTATGTTCATAGCAGTCTTATTTATAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGACACATGCTCCACTATGTTCATAGCAGTCTTATTTATAGTAG  150

seq1  CCAAAGCTGAAAAGAACCAAGATATCCCTCAACAGAGGAATGGATAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGAAAAGAACCAAGATATCCCTCAACAGAGGAATGGATAGAGA  200

seq1  AAATATGGTATATTTATGCAATGGAATACTACTCAACTATTAAAAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGTATATTTATGCAATGGAATACTACTCAACTATTAAAAATAAC  250

seq1  GACTTCATGAAATTCTTAGGCAAATGGATGGAGCTAGAAAATACAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATGAAATTCTTAGGCAAATGGATGGAGCTAGAAAATACAATCTG  300

seq1  AGTGAAGAAACCCAATCACATAAGAACACAAATGATATACATTCATGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAAACCCAATCACATAAGAACACAAATGATATACATTCATGGGT  350

seq1  AAATGGATATTAGCCCAGAATCTTAATCATTGAGCCATTTCTCTAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATATTAGCCCAGAATCTTAATCATTGAGCCATTTCTCTAGCCTC  400

seq1  AGAATTAGCATTTTCAGAAGCTTAAGATTCAATTAAAATTTTTTCTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGCATTTTCAGAAGCTTAAGATTCAATTAAAATTTTTTCTATAA  450

seq1  TTTTTATTTTACATTGCTCTATTTGGAGCTGTAGTTATTCTTTTCACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTACATTGCTCTATTTGGAGCTGTAGTTATTCTTTTCACATA  500

seq1  TTTAGTGAAAGATTTGTTTAAACTCTGGGTGATCTTTGTAAATCTCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAAAGATTTGTTTAAACTCTGGGTGATCTTTGTAAATCTCTCCA  550

seq1  ATCTTTAGGTATTTGATGATTTTTTTCTGGCCTAGTTATTACATATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGGTATTTGATGATTTTTTTCTGGCCTAGTTATTACATATCTCT  600

seq1  TTTACATATGGTGAATGTAAGCCATAGATTGTTATTGCTCCATTAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATATGGTGAATGTAAGCCATAGATTGTTATTGCTCCATTAAATCT  650

seq1  TTGTAAATCTTTTGCCTCTGTGGTTCACTACTCAAAATTTTGATAACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATCTTTTGCCTCTGTGGTTCACTACTCAAAATTTTGATAACTTA  700

seq1  CTGGAACCTCTTCACTTGGTTCTAATTCCAATATCAGGACTGGAAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCTCTTCACTTGGTTCTAATTCCAATATCAGGACTGGAAAAATC  750

seq1  CTTTAAATTTTTTTTTGGACACACACTGCCTGTTTGCAGACTGTGGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTTTTTTTTGGACACACACTGCCTGTTTGCAGACTGTGGGAAG  800

seq1  CCATTTCGGACTACTGGCCAGCCCGGACAGAAATCTGTGCCAGGCAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCGGACTACTGGCCAGCCCGGACAGAAATCTGTGCCAGGCAGTAA  850

seq1  ACAAGCCAATA-TTTGGTGGATGGCTCGCCCTTAATCCCTGATTGGCTGA  899
      || |||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AC-AGCCAATATTTTGGTGGATGGCTCGCTCTTAATCCCTGATTGGCTGA  899

seq1  GCAAGCCTGCCTGGTGAGGTGATGTGACCTGTGGTGATTGGTTGAGGCGT  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAAGCCTGCCTGGTGAGGTGATGTGACTTGTGGTGATTGGTTGAGGCGT  949

seq1  GGTTGTGGTTTGAGTGCATAAAAACGCTTGTACCCCGAGGTTTGGGGGAT  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTTGTGGTTTGAGTGCATAAAAACGCTTGTACCCCGAGGTTTGGGGGAT  998

seq1  TTGAAGAGAAAGTAAACTGCATTAAGAAGAACCGGTGGTTGTGTTTTCCT  1049
      ||||||| ||||| ||||||||| |||   |||||||||| || ||| ||
seq2  TTGAAGAAAAAGTCAACTGCATT-AGA--GACCGGTGGTT-TGGTTTTCT  1044

seq1  TGCTGGTCGAGTTGGATGCAACAGCAGACTTGC  1082
      ||||||||||||||||||||||| || ||||||
seq2  TGCTGGTCGAGTTGGATGCAACA-CA-ACTTGC  1075