BAC Information

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BAC

Clone NameB6Ng01-139H01
Chromosome7 (Build37)
Map Location 84,395,358 - 84,576,884
singlet/doubletdoublet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139H01.bB6Ng01-139H01.g
ACCDH938420DH938421
length1,105570
definitionDH938420|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H01, 5' end.DH938421|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,395,358 - 84,396,460)(84,576,310 - 84,576,884)
sequence
gaattcattagttcactaaaactgatttgggtggaatcgatttttgcttc
tttgtcaatgtcctaatagatgtctgagcataacttttagcctacatcat
ttggtacctcagtgggggaatgagagaaccagagatgaatttggaaacag
ctatataacttccactgtacatggtaagatatgaaactgaaggtaagtca
cttaaagttggagcagccatagcatgacttctcatgtggctctccttcat
ggtgagctatgaaatagtatgttggaattgtcccattatgagtgacaaga
aatacaaccaaggctcaaagttctatccagaaaaatctcaaccaaggaag
gaattacaataacaaaaagacttgcaagtggcatcatgcgtaatctgtag
ataagatgaacaaaaaggagaagagaaagtgtaagtattggcttgttgtt
ttgtttgtttgtttgtcttgtttgctttttttttaatggatggaggtgga
cagaggagaaaaaagtacaaattatgctggcatttaatcatgacatccaa
taagggaaaaaaagaaaaaaaccttagagaccatgttaaagtaatgatga
acgagagagaaaagtatagtgaaaggattggacaggagaaagatggtctg
tggtgccaatttcatcaaaccagataggtctgggctcacccaagagtcag
gaaagttgctaataatgaatgagttcaccagagatatcaatatttgtatt
tgtgtggtgaactccatgatgatgttttctgagcctcgtgatggttcttc
ttagtttttaaaagctagaagagggatacagaggatcttagtgccttaat
ccagtaaaacagatgtgagaaaagagagtgagtagaaaagaaaaataggg
cttttacaagtttcttaaaaacaaatttgtcaaattagtgtcaaggtaga
gttcgaagagtaaattggaacaaagctaagatcagtattagtgagccaat
tcaaggctttaaagtctgggtagcatttcatagaatgggtgagtaggagt
gaaactgactgatgaagatagatagattggtgatcgatagattgaatgat
agatg
aaagggatccacatttatcacactgcaccacattcaagttgaaggtactt
tctaattggaccatttttgtttctatgtaaaatactttggtaaaagttgt
taacataacctatattttaatcttaaattttgggttctgatgactggaac
acattcattccgatgtctgtacttagtgacagcactgacttttagtaggc
tgatttacatttttcttcatgctattttgtaagtatttgagttcatgtaa
gacagtttgaatgtagacttactctagtcagactactaggctttttgaaa
atcatttaggatcttcctgaaatgcagctatatttcttagaattagttct
tctgttctagatcttgtagttagaatgtgtgtgtgtgtgtgtgtgtgtgt
gtgtatccagaaaaagttttactcccgggttaaatatttctctctatgaa
tgaaatacacttttcagtattccaatacttcaaataaaatgaggctttcc
tgctgggcttttgacaccacatggtatttttgtttcatgggtgagcacta
ggtacaaatcctcccattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_84395358_84396460
seq2: B6Ng01-139H01.b_43_1146

seq1  GAATTCATTAGTTCACTAAAACTGATTTGGGTGGAATCGATTTTTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTTCACTAAAACTGATTTGGGTGGAATCGATTTTTGCTTC  50

seq1  TTTGTCAATGTCCTAATAGATGTCTGAGCATAACTTTTAGCCTACATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAATGTCCTAATAGATGTCTGAGCATAACTTTTAGCCTACATCAT  100

seq1  TTGGTACCTCAGTGGGGGAATGAGAGAACCAGAGATGAATTTGGAAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACCTCAGTGGGGGAATGAGAGAACCAGAGATGAATTTGGAAACAG  150

seq1  CTATATAACTTCCACTGTACATGGTAAGATATGAAACTGAAGGTAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAACTTCCACTGTACATGGTAAGATATGAAACTGAAGGTAAGTCA  200

seq1  CTTAAAGTTGGAGCAGCCATAGCATGACTTCTCATGTGGCTCTCCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTGGAGCAGCCATAGCATGACTTCTCATGTGGCTCTCCTTCAT  250

seq1  GGTGAGCTATGAAATAGTATGTTGGAATTGTCCCATTATGAGTGACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTATGAAATAGTATGTTGGAATTGTCCCATTATGAGTGACAAGA  300

seq1  AATACAACCAAGGCTCAAAGTTCTATCCAGAAAAATCTCAACCAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACCAAGGCTCAAAGTTCTATCCAGAAAAATCTCAACCAAGGAAG  350

seq1  GAATTACAATAACAAAAAGACTTGCAAGTGGCATCATGCGTAATCTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAATAACAAAAAGACTTGCAAGTGGCATCATGCGTAATCTGTAG  400

seq1  ATAAGATGAACAAAAAGGAGAAGAGAAAGTGTAAGTATTGGCTTGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGAACAAAAAGGAGAAGAGAAAGTGTAAGTATTGGCTTGTTGTT  450

seq1  TTGTTTGTTTGTTTGTCTTGTTTGCTTTTTTTTTAATGGATGGAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTCTTGTTTGCTTTTTTTTTAATGGATGGAGGTGGA  500

seq1  CAGAGGAGAAAAAAGTACAAATTATGCTGGCATTTAATCATGACATCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAAAAAAGTACAAATTATGCTGGCATTTAATCATGACATCCAA  550

seq1  TAAGGGAAAAAAAGAAAAAAACCTTAGAGACCATGTTAAAGTAATGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAAAAAAGAAAAAAACCTTAGAGACCATGTTAAAGTAATGATGA  600

seq1  ACGAGAGAGAAAAGTATAGTGAAAGGATTGGACAGGAGAAAGATGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAGAAAAGTATAGTGAAAGGATTGGACAGGAGAAAGATGGTCTG  650

seq1  TGGTGCCAATTTCATCAAACCAGATAGGTCTGGGCTCACCCAAGAGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCAATTTCATCAAACCAGATAGGTCTGGGCTCACCCAAGAGTCAG  700

seq1  GAAAGTTGCTAATAATGAATGAGTTCACCAGAGATATCAATATTTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGCTAATAATGAATGAGTTCACCAGAGATATCAATATTTGTATT  750

seq1  TGTGTGGTGAACTCCATGATGATGTTTTCTGAGCCTCGTGATGGTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTGAACTCCATGATGATGTTTTCTGAGCCTCGTGATGGTTCTTC  800

seq1  TTAGTTTTTAAAAGCTAGAAGAGGGATACAGAGGATCTTAGTGCCTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTAAAAGCTAGAAGAGGGATACAGAGGATCTTAGTGCCTTAAT  850

seq1  CCAGTAAAACAGATGTGAGAAAAGAGAGTGAGTAGAAAAGAAAAAATAGG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGTAAAACAGATGTGAGAAAAGAGAGTGAGTAGAAAAG-AAAAATAGG  899

seq1  GCTTTTACAAGTTTCTTAAAAACAAATTTGTCAAAATTAGTGTCAAGGTA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTTTTACAAGTTTCTTAAAAACAAATTTGTC-AAATTAGTGTCAAGGTA  948

seq1  GAGTTCGAAGGAGTAAATTGGAACAAAGCTAAGATCAGTATTAGTGAGCC  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAA-GAGTAAATTGGAACAAAGCTAAGATCAGTATTAGTGAGCC  997

seq1  AATTCAAGGCTTTAAAGTCTGGGTAGCATTTCATAGAATGGGTGAAGTAA  1050
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  AATTCAAGGCTTTAAAGTCTGGGTAGCATTTCATAGAATGGGTG-AGT-A  1045

seq1  GGAGTGAAAAACTGAC--AGGATGAAAGATA------AGATAGATAGATA  1092
      ||||||  ||||||||  | || || |||||       ||| ||||||| 
seq2  GGAGTG--AAACTGACTGATGAAGATAGATAGATTGGTGATCGATAGATT  1093

seq1  GATAGATAGAT  1103
      ||  |||||||
seq2  GAATGATAGAT  1104

seq1: chr7_84576310_84576884
seq2: B6Ng01-139H01.g_66_641 (reverse)

seq1  GTAATGGGAGGATTTGTACCTAGTGCTCACCCATG-AACAAAACTACCAT  49
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  GTAATGGGAGGATTTGTACCTAGTGCTCACCCATGAAACAAAAATACCAT  50

seq1  GTGGTGTCAAAAGCCCAGCAGGAAAGCCTCATTTTATTTGAAGTATTGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCAAAAGCCCAGCAGGAAAGCCTCATTTTATTTGAAGTATTGGA  100

seq1  ATACTGAAAAGTGTATTTCATTCATAGAGAGAAATATTTAACCCGGGAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAAAGTGTATTTCATTCATAGAGAGAAATATTTAACCCGGGAGT  150

seq1  AAAACTTTTTCTGGATACACACACACACACACACACACACACACATTCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTTCTGGATACACACACACACACACACACACACACACATTCTA  200

seq1  ACTACAAGATCTAGAACAGAAGAACTAATTCTAAGAAATATAGCTGCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGATCTAGAACAGAAGAACTAATTCTAAGAAATATAGCTGCATT  250

seq1  TCAGGAAGATCCTAAATGATTTTCAAAAAGCCTAGTAGTCTGACTAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGATCCTAAATGATTTTCAAAAAGCCTAGTAGTCTGACTAGAGT  300

seq1  AAGTCTACATTCAAACTGTCTTACATGAACTCAAATACTTACAAAATAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTACATTCAAACTGTCTTACATGAACTCAAATACTTACAAAATAGC  350

seq1  ATGAAGAAAAATGTAAATCAGCCTACTAAAAGTCAGTGCTGTCACTAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAATGTAAATCAGCCTACTAAAAGTCAGTGCTGTCACTAAGT  400

seq1  ACAGACATCGGAATGAATGTGTTCCAGTCATCAGAACCCAAAATTTAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATCGGAATGAATGTGTTCCAGTCATCAGAACCCAAAATTTAAGA  450

seq1  TTAAAATATAGGTTATGTTAACAACTTTTACCAAAGTATTTTACATAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATAGGTTATGTTAACAACTTTTACCAAAGTATTTTACATAGAA  500

seq1  ACAAAAATGGTCCAATTAGAAAGTACCTTCAACTTGAATGTGGTGCAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATGGTCCAATTAGAAAGTACCTTCAACTTGAATGTGGTGCAGTG  550

seq1  TGATAAATGTGGATCCCTTTGAATTC  575
      ||||||||||||||||||||||||||
seq2  TGATAAATGTGGATCCCTTTGAATTC  576