BAC Information

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BAC

Clone NameB6Ng01-139J03
Chromosome7 (Build37)
Map Location 86,410,081 - 86,530,282
singlet/doubletdoublet
Overlap geneAbhd2, Rlbp1
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8
Downstream geneBC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139J03.bB6Ng01-139J03.g
ACCDH938520DH938521
length6731,082
definitionDH938520|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J03, 5' end.DH938521|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,529,605 - 86,530,282)(86,410,081 - 86,411,039)
sequence
gaattccctggtcctttgggggctgtggagggaagggataggccctcaga
tattctctgagatcctcaagaacagtgtacaaattgggttaatctcagtg
ctagcaaagggagaaaagactgttgtcgatcaggagtcctctctcggtta
tgtcacagaaccctgtggtcctcacagcggtcacttttggtagatattat
tatccttcgttggctctcaatctcagaaggattaaataccttgcctatgg
tcacacaggtggtaaaagtcagattcaaattcagatctctctaacctata
aggtttctgtcaccagctcccccagggactttgcaaagagatgacttggc
ttgaggcaaagagacttagtgtcaggtggatacaggttcaagtcctagct
taaataccaactatgcgtaagtgaccgagctgaccaatggaacctagcca
caggcagaaacagaatgtaaagatgttcacagtcactggggacatttagg
tcttggaggagaaaatctggaaatgtgggtcatgatggatatctgttctg
gtggcccagaaatctatgctggtgtatattatctaattacatataatcct
tctatcccaaccagggacggtcaagactcggataaatcacacaacttgca
gtgtgagagtagcattgcaatct
gaattcaataaggaaatacagacactgatggggactcaagctgaaatgaa
aacggaattgaaaaaaaaaaacccaaacaaatcaataactcaattaaaaa
actcaaaggaaaaccttacaagtggaatgagtcaaacagaagacaaaata
ccgagactcaaagatcaaacaggggatctagaccaaataagcgaggaatg
caattaaaaacaaaacaaaacaaaaggaaacaacaaacaagaagtgtgag
acagcaaggattgcaggcacagatgagggaggagaattccaagtcagtag
cttcaacaagatcatagaaggagccgggtggtggtggcacatgcctttaa
tcccagcacttgggaggcagaggcaggcagatctctgagttcaaggccag
cctggtctacaaagtgagttccaggacagccagggctatacagagaaacc
ctgtctcaaaaaactaaaataacaaaacaaacaaacaaacaaagatcata
gaaggaaacttcccaaaactaataaaaaacacaccaatacagatacatgg
ggcacacaggacatctgatggattcaaccaaaaaagaaccctcccacgac
atatcataatgaaaagacagtgtattgaaagtttcaggagaaaaaaaaaa
aaaaaaacatgtatctcatgacagtctgccttgctgcaagcctaaagctt
tagatcaagagattgaaacttcaagccaaataaactttcttcctttaagt
gatttatctcagtatttgccacagagatggaaagctgaggaacgcagatc
tgcatctagagtatttcaagtgcctcccccaactcagtagtgaaaaaaat
acatgctatgacgtagatgaactttgacaaagtgaaagacagtcacaaat
gacatatattattccatttatgtgaaattccaaggataggtggaacctgt
gaatacagaaaagattaatgaggtgcaggattgggggtagcattcaggag
aatgggagttattactgacagcaaagggtttttttaaattgtatcaggtg
tgttcattggaattgacaccatctatctatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_86529605_86530282
seq2: B6Ng01-139J03.b_45_716 (reverse)

seq1  GATTGCAATGCTGTCTCTCACACTTGCAAGTTGTGTGATTTCATCCGAGT  50
      ||||||||||||  ||||||||| ||||||||||||||||| ||||||||
seq2  GATTGCAATGCT-ACTCTCACAC-TGCAAGTTGTGTGATTT-ATCCGAGT  47

seq1  CTTGACCGTCCCTTGTTGGGATAGAAGGATTAATATGTAATTAGATAATA  100
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CTTGACCGTCCCTGGTTGGGATAGAAGGATT-ATATGTAATTAGATAATA  96

seq1  TACACCAGCATAGATTTCTGGGCCACCAGAACAGATATCCATCATGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGCATAGATTTCTGGGCCACCAGAACAGATATCCATCATGACCC  146

seq1  ACATTTCCAGATTTTCTCCTCCAAGACCTAAATGTCCCCAGTGACTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCAGATTTTCTCCTCCAAGACCTAAATGTCCCCAGTGACTGTGA  196

seq1  ACATCTTTACATTCTGTTTCTGCCTGTGGCTAGGTTCCATTGGTCAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTACATTCTGTTTCTGCCTGTGGCTAGGTTCCATTGGTCAGCTC  246

seq1  GGTCACTTACGCATAGTTGGTATTTAAGCTAGGACTTGAACCTGTATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTACGCATAGTTGGTATTTAAGCTAGGACTTGAACCTGTATCCA  296

seq1  CCTGACACTAAGTCTCTTTGCCTCAAGCCAAGTCATCTCTTTGCAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTAAGTCTCTTTGCCTCAAGCCAAGTCATCTCTTTGCAAAGTC  346

seq1  CCTGGGGGAGCTGGTGACAGAAACCTTATAGGTTAGAGAGATCTGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGAGCTGGTGACAGAAACCTTATAGGTTAGAGAGATCTGAATTT  396

seq1  GAATCTGACTTTTACCACCTGTGTGACCATAGGCAAGGTATTTAATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGACTTTTACCACCTGTGTGACCATAGGCAAGGTATTTAATCCTT  446

seq1  CTGAGATTGAGAGCCAACGAAGGATAATAATATCTACCAAAAGTGACCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTGAGAGCCAACGAAGGATAATAATATCTACCAAAAGTGACCGC  496

seq1  TGTGAGGACCACAGGGTTCTGTGACATAACCGAGAGAGGACTCCTGATCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGACCACAGGGTTCTGTGACATAACCGAGAGAGGACTCCTGATCG  546

seq1  ACAACAGTCTTTTCTCCCTTTGCTAGCACTGAGATTAACCCAATTTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTCTTTTCTCCCTTTGCTAGCACTGAGATTAACCCAATTTGTAC  596

seq1  ACTGAAACTTGAGGATCTCAGAGAATATCTGAGGGCCTATCCCTTCCCTA  650
      ||||   |||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTG-TTCTTGAGGATCTCAGAGAATATCTGAGGGCCTATCCCTTCCCT-  644

seq1  CCACAGCCCCCAAAGGACCAGGGAATTC  678
      ||||||||||||||||||||||||||||
seq2  CCACAGCCCCCAAAGGACCAGGGAATTC  672

seq1: chr7_86410081_86411039
seq2: B6Ng01-139J03.g_215_1148

seq1  TACCGAGACTCAAAGATCAAACAGGGGATCTAGACCAAATAAGCGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAGACTCAAAGATCAAACAGGGGATCTAGACCAAATAAGCGAGGAA  50

seq1  TGCAATTAAAAACAAAACAAAACAAAAGGAAACAACAAACAAGAAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAAAAACAAAACAAAACAAAAGGAAACAACAAACAAGAAGTGTG  100

seq1  AGACAGCAAGGATTGCAGGCACAGATGAGGGAGGAGAATTCCAAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAGGATTGCAGGCACAGATGAGGGAGGAGAATTCCAAGTCAGT  150

seq1  AGCTTCAACAAGATCATAGAAGGAGCCGGGTGGTGGTGGCACATGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAACAAGATCATAGAAGGAGCCGGGTGGTGGTGGCACATGCCTTT  200

seq1  AATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCAAGGCC  250

seq1  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAA  300

seq1  CCCTGTCTCAAAAAACTAAAATAACAAAACAAACAAACAAACAAAGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCAAAAAACTAAAATAACAAAACAAACAAACAAACAAAGATCA  350

seq1  TAGAAGGAAACTTCCCAAAACTAATAAAAAACACACCAATACAGATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAAACTTCCCAAAACTAATAAAAAACACACCAATACAGATACAT  400

seq1  GGGGCACACAGGACATCTGATGGATTCAACCAAAAAAGAACCCTCCCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACACAGGACATCTGATGGATTCAACCAAAAAAGAACCCTCCCACG  450

seq1  ACATATCATAATGAAAAGACAGTGTATTGAAAGTTTCAGGAGAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCATAATGAAAAGACAGTGTATTGAAAGTTTCAGGAGAAAAAAAA  500

seq1  AAAAAAAAACATGTATCTCATGACAGTCTGCCTTGCTGCAAGCCTAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACATGTATCTCATGACAGTCTGCCTTGCTGCAAGCCTAAAGC  550

seq1  TTTAGATCAAGAGATTGAAACTTCAAGCCAAATAAACTTTCTTCCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAAGAGATTGAAACTTCAAGCCAAATAAACTTTCTTCCTTTAA  600

seq1  GTGATTTATCTCAGTATTTGCCACAGAGATGGAAAGCTGAGGAACGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATCTCAGTATTTGCCACAGAGATGGAAAGCTGAGGAACGCAGA  650

seq1  TCTGCATCTAGAGTA-TTCAAG-GCCTCCCCCAACTCAGTAGTGAAAAAA  698
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TCTGCATCTAGAGTATTTCAAGTGCCTCCCCCAACTCAGTAGTGAAAAAA  700

seq1  ATACATGCTATGACGTAGATGAACTTTGACAAAGTGAAAGACAGTCACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCTATGACGTAGATGAACTTTGACAAAGTGAAAGACAGTCACAA  750

seq1  ATGACATATATTATTCCATTTATGTGAAATTTCCAGGATAGGT-GAACCT  797
      ||||||||||||||||||||||||||||||| | ||||||||| ||||||
seq2  ATGACATATATTATTCCATTTATGTGAAATTCCAAGGATAGGTGGAACCT  800

seq1  GTGAATACAG-AAAGATTAATGA-GTGCAGGGATTGGGGGTAAGCATTCA  845
      |||||||||| |||||||||||| ||||| ||||||||||| ||||||||
seq2  GTGAATACAGAAAAGATTAATGAGGTGCA-GGATTGGGGGT-AGCATTCA  848

seq1  GGAGAATGGGAAGTTATTACTGACAAGCAAAGGGTTTTTTTTTAAATTGT  895
      |||||||||| ||||||||||||| |||||||||  ||||||||||||| 
seq2  GGAGAATGGG-AGTTATTACTGAC-AGCAAAGGG--TTTTTTTAAATTG-  893

seq1  TATCAGTGGTGTTCATTTGTAATATGACAACTATCTATCTAT-CTATCTA  944
      ||||||  ||||||| ||| ||| |||| || |||||||||| |      
seq2  TATCAGGTGTGTTCA-TTGGAAT-TGAC-ACCATCTATCTATCC------  934

seq1  TCTATCTATCTATCC  959
                     
seq2  ---------------  934