BAC Information

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BAC

Clone NameB6Ng01-139N08
Chromosome7 (Build37)
Map Location 144,383,898 - 144,503,895
singlet/doubletdoublet
Overlap geneEbf3
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139N08.bB6Ng01-139N08.g
ACCDH938716DH938717
length9941,078
definitionDH938716|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N08, 5' end.DH938717|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,383,898 - 144,384,907)(144,502,815 - 144,503,895)
sequence
gaattctcctaattgtatgtattctctccagaaaatgatcatcgtggcct
cttgtcttgatgagaaattgacattttctgaggacttctttgggtgctcc
aaacaggggagataaggcccggagttgttttaaagcagagcggcctttct
tccctttcaggggcctctttattgctctcgttgacccacttgatgagtat
ggatttcatgaggtctttttcagcatttgaactataaaaggttcagtacg
acaccaccccttatagacaaaagataaccttgccctttgaatatattgat
tctttattaactaggctgtttaatgcaatgaaatgaggcattagattgaa
gcccatttcaagtgctttgaataatctttaaaagcctgaaagaccttaga
gagacctgacaatactccgcatgcggtttttttttttttttttttttttt
tttttttttttttttgaggattggttcttgcttctgggttgaaacgcaag
cttttgaacttttttttgtccaggtcaacagaccctatcacactagctcc
aaagacccgagcagagttctttgggcaacccgttccttggccctggtgac
tcaggaagggctgaagtgggctttgtgccctaagaacccgtttctttact
gtctctttaaggcccgcccacaaaggctcagccctgactggagggaaagg
tatttccaagtttcattctgttttgaaaaatgtttcctggtttgctcagc
caaacaaatatttaatgacatttgtgagtactaatttaattccccttctg
acgggtgaaaaaactgcaagcccaaactttaaagcctcgcttgccattga
gaaaaactgcaacgtgcttaccggaaatcaatgaatatacaaaggaagca
agggttgtggaaattaaaaccgttgtctaggaaaagtcacgtcactggag
tcccaccttacctcctctatgtgtgccccaggggcagtgcaaga
gaattccatatttattggaataaatggaccggttgctacaaatagtttat
gccgtcattaaaacaggacatatatgctttattaaatgacttgcgattgg
aatcaaactctgtcttaattaattacggtaattaatatttgacagaaaaa
ttccaagatcccccccttgtttatttttaaacgtttctttctctgcttga
aaaccatttcatggggtttctgacccctcccctcaacaaagacaactgac
tgtcccaaagctcatcgagttaggctggcttagttagttcccctcctcct
ttctagtgccatggtctggtaacacgagccatgtatttggatttaaaagt
taaatgtgctggggtgagaagtcaccttgttcccctctagtccgtcttca
cctctcagccccccatctccataattcaaagtctgagctccaggggtcac
tcaaacccatccactgctctgctctctctctcaccctctgtcataccttg
taaataacataattacaagcagttccttattaaattatttaacctgtctt
ggtcaacttttcggatgataactattggctatcagtaatgtgattaactg
cagaaagatgcctcattgctttttgagggtgtccagtctctggctgctaa
tgttgtactgggtgatgtgttactgtttttaaggacattgtttccacgtt
cttaaaaatagagtgttgggtgtatgcatatagaattcctaaattaagca
caccctgcactgattgttttagaatggaggatatacagggtcacactaga
aatgaaagtagtctcttcatttttgggttcataactttcggtattatgaa
caagtgggaaagagcttcctgcagcccggcacacacgcctcctatctctg
agcacaattgcacatttttatttcctctgaaaaggtttgttcctacctag
gcagccaagaacatgaaggttttaatgtctgccaccgcagagctgtggtg
gttttctcctgaaccaaaatcttgccaggtaaccgtgttttctgaacaga
ctgggtgtgcccttttgccagcctgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_144383898_144384907
seq2: B6Ng01-139N08.b_46_1039

seq1  GAATTCTCCTAATTGTATGTATTCTCT-GAGAAAATGATCATCGTGGCCT  49
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GAATTCTCCTAATTGTATGTATTCTCTCCAGAAAATGATCATCGTGGCCT  50

seq1  CTTGTCTTGATGAGAAATTGACATTTTCTGAGGACTTCTTTGGGTGCTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTGATGAGAAATTGACATTTTCTGAGGACTTCTTTGGGTGCTCC  100

seq1  AAACAGGGGAGATAAGGCCCGGAGTTGTTTTAAAGCAGAGCGGCCTTTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGGAGATAAGGCCCGGAGTTGTTTTAAAGCAGAGCGGCCTTTCT  150

seq1  TCCCTTTCAGGGGCCTCTTTATTGCTCTCGTTGACCCACTTGATGAGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCAGGGGCCTCTTTATTGCTCTCGTTGACCCACTTGATGAGTAT  200

seq1  GGATTTCATGAGGTCTTTTTCAGCATTTGAACTATAAAAGGTTCAGTACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATGAGGTCTTTTTCAGCATTTGAACTATAAAAGGTTCAGTACG  250

seq1  ACACCACCCCTTATAGACAAAAGATAACCTTGCCCTTTGAATATATTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCCCTTATAGACAAAAGATAACCTTGCCCTTTGAATATATTGAT  300

seq1  TCTTTATTAACTAGGCTGTTTAATGCAATGAAATGAGGCATTAGATTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTAACTAGGCTGTTTAATGCAATGAAATGAGGCATTAGATTGAA  350

seq1  GCCCATTTCAAGTGCTTTGAATAATCTTTAAAAGCCTGAAAGACCTTAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTCAAGTGCTTTGAATAATCTTTAAAAGCCTGAAAGACCTTAGA  400

seq1  GAGACCTGACAATACTCCGCATGCGGTTTTTTTTTTTTTTTTTTTTTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGACAATACTCCGCATGCGGTTTTTTTTTTTTTTTTTTTTTTTT  450

seq1  TTTTTTTTTTTTTTTGAGGATTGGTTCTTGCTTCTGGTTTGAAACGCAAG  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTTTTTTTTTTTTGAGGATTGGTTCTTGCTTCTGGGTTGAAACGCAAG  500

seq1  CTTTTGAACTTCTTTCTGTCCAGGTCAACAGACCCTATCACACTAGCTCC  549
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  CTTTTGAACTTTTTTTTGTCCAGGTCAACAGACCCTATCACACTAGCTCC  550

seq1  AAAGACCTGAGCAGAGTTCTTTGGGCAACCCGTTCCTTGGCCCTGGTGAC  599
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCGAGCAGAGTTCTTTGGGCAACCCGTTCCTTGGCCCTGGTGAC  600

seq1  TCAGGAAGGCCTGAAGTGGGCTTTGTGCCATAGGAACCTGTTTCTTTACT  649
      ||||||||| ||||||||||||||||||| || ||||| |||||||||||
seq2  TCAGGAAGGGCTGAAGTGGGCTTTGTGCCCTAAGAACCCGTTTCTTTACT  650

seq1  GTCTCTTTAAGGCCCGCCAACAAAGGCTCAGCACTGACTGGAGGGAAAGG  699
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GTCTCTTTAAGGCCCGCCCACAAAGGCTCAGCCCTGACTGGAGGGAAAGG  700

seq1  TATTCACAAGTTTCATTCTGTTTTGAATAATTGTTTCCTGTTTTGCTCAG  749
      ||||  ||||||||||||||||||||| || ||||||||| |||||||||
seq2  TATTTCCAAGTTTCATTCTGTTTTGAA-AAATGTTTCCTGGTTTGCTCAG  749

seq1  CAGAACAAGTAATTAAGATGACATTTGTGAGTACTAATTTAGATCACACT  799
      |  ||||| || |||  |||||||||||||||||||||||| ||  | ||
seq2  CCAAACAAATATTTA--ATGACATTTGTGAGTACTAATTTA-ATTCCCCT  796

seq1  TACTGAACGGGTGACAAAACTGCAAGCCAAAACATGTAAAGCCT-GCCTG  848
      | ||| |||||||| ||||||||||||| |||| | |||||||| || ||
seq2  T-CTG-ACGGGTGAAAAAACTGCAAGCCCAAAC-TTTAAAGCCTCGCTTG  843

seq1  CCATTGAGGAGAAACTGCAGCGTGCTGAGCGGAATCGAATGAGATACAGA  898
      ||||||| || |||||||| |||||| | |||||   ||||| ||| | |
seq2  CCATTGA-GAAAAACTGCAACGTGCTTACCGGAAATCAATGA-ATATACA  891

seq1  AGGCAGGCAAGGGCTGTGGAAATTAGAACCTGTGTTCATGGAGAATGTCA  948
      | | | ||||||| ||||||||||| |||| ||  ||  ||| || ||| 
seq2  AAGGAAGCAAGGGTTGTGGAAATTAAAACC-GTTGTCTAGGA-AAAGTC-  938

seq1  ACGTCACTGGAGTCCCAGCCTTGACCATCATCTATGTGTAGCCACCAGTG  998
      ||||||||||||||||| |||| ||| || ||||||||| ||| |||| |
seq2  ACGTCACTGGAGTCCCA-CCTT-ACC-TCCTCTATGTGT-GCC-CCAG-G  982

seq1  GCCAGTGCAAGA  1010
      | ||||||||||
seq2  GGCAGTGCAAGA  994

seq1: chr7_144502815_144503895
seq2: B6Ng01-139N08.g_70_1147 (reverse)

seq1  GTGCAAGGCTGGCAAAAGGGCACACCACAGTCTGTGTCAGAAAAACACGT  50
      |||| ||||||||||||||||||||| |||||||| |||| |||||||| 
seq2  GTGC-AGGCTGGCAAAAGGGCACACC-CAGTCTGT-TCAG-AAAACACGG  46

seq1  TTACCT-GCCAGATCTTTGCTCCAGGAGAAAAACCACACAGCTCTGCGGC  99
      |||||| || |||| |||| | |||||||||| |  ||||||||||||| 
seq2  TTACCTGGCAAGAT-TTTGGTTCAGGAGAAAACCACCACAGCTCTGCGGT  95

seq1  TGCAGACATTAAAACC-TCATGTTC-TGGCTGCCTAGGTAAGGACAAACT  147
       ||||||||||||||| |||||||| |||||||||||||| | |||||| 
seq2  GGCAGACATTAAAACCTTCATGTTCTTGGCTGCCTAGGTAGGAACAAACC  145

seq1  TTTTCAGA-GAAATAAAAATGTGCAAATTGTGCTCAGAGAATAGGAGGCG  196
      |||||||| ||||||||||||||| |||||||||||||| ||||||||||
seq2  TTTTCAGAGGAAATAAAAATGTGC-AATTGTGCTCAGAG-ATAGGAGGCG  193

seq1  TGTGTGCCGGGCTGCAGGAAGCTCTTTCCCACTTGGTTCATAATACCGAA  246
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTGTGCCGGGCTGCAGGAAGCTCTTTCCCACTT-GTTCATAATACCGAA  242

seq1  AGTTATGAA-CCAAAAATGAAGAGACTACTTTCATTTCTAGTGTGACCCT  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAACCCAAAAATGAAGAGACTACTTTCATTTCTAGTGTGACCCT  292

seq1  GTATATCCTCCATTCTAAAACAATCAGTGCAGGGTGTGCTTAATTTAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCCTCCATTCTAAAACAATCAGTGCAGGGTGTGCTTAATTTAGGA  342

seq1  ATTCTATATGCATACACCCAACACTCTATTTTTAAGAACGTGGAAACAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATGCATACACCCAACACTCTATTTTTAAGAACGTGGAAACAAT  392

seq1  GTCCTTAAAAACAGTAACACATCACCCAGTACAACATTAGCAGCCAGAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTAAAAACAGTAACACATCACCCAGTACAACATTAGCAGCCAGAGA  442

seq1  CTGGACACCCTCAAAAAGCAATGAGGCATCTTTCTGCAGTTAATCACATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACCCTCAAAAAGCAATGAGGCATCTTTCTGCAGTTAATCACATT  492

seq1  ACTGATAGCCAATAGTTATCATCCGAAAAGTTGACCAAGACAGGTTAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAGCCAATAGTTATCATCCGAAAAGTTGACCAAGACAGGTTAAAT  542

seq1  AATTTAATAAGGAACTGCTTGTAATTATGTTATTTACAAGGTATGACAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAAGGAACTGCTTGTAATTATGTTATTTACAAGGTATGACAGA  592

seq1  GGGTGAGAGAGAGAGCAGAGCAGTGGATGGGTTTGAGTGACCCCTGGAGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAGAGAGAGCAGAGCAGTGGATGGGTTTGAGTGACCCCTGGAGC  642

seq1  TCAGACTTTGAATTATGGAGATGGGGGGCTGAGAGGTGAAGACGGACTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTTGAATTATGGAGATGGGGGGCTGAGAGGTGAAGACGGACTAG  692

seq1  AGGGGAACAAGGTGACTTCTCACCCCAGCACATTTAACTTTTAAATCCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACAAGGTGACTTCTCACCCCAGCACATTTAACTTTTAAATCCAA  742

seq1  ATACATGGCTCGTGTTACCAGACCATGGCACTAGAAAGGAGGAGGGGAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGCTCGTGTTACCAGACCATGGCACTAGAAAGGAGGAGGGGAAC  792

seq1  TAACTAAGCCAGCCTAACTCGATGAGCTTTGGGACAGTCAGTTGTCTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGCCAGCCTAACTCGATGAGCTTTGGGACAGTCAGTTGTCTTTG  842

seq1  TTGAGGGGAGGGGTCAGAAACCCCATGAAATGGTTTTCAAGCAGAGAAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAGGGGTCAGAAACCCCATGAAATGGTTTTCAAGCAGAGAAAG  892

seq1  AAACGTTTAAAAATAAACAAGGGGGGGATCTTGGAATTTTTCTGTCAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTTAAAAATAAACAAGGGGGGGATCTTGGAATTTTTCTGTCAAAT  942

seq1  ATTAATTACCGTAATTAATTAAGACAGAGTTTGATTCCAATCGCAAGTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACCGTAATTAATTAAGACAGAGTTTGATTCCAATCGCAAGTCA  992

seq1  TTTAATAAAGCATATATGTCCTGTTTTAATGACGGCATAAACTATTTGTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAGCATATATGTCCTGTTTTAATGACGGCATAAACTATTTGTA  1042

seq1  GCAACCGGTCCATTTATTCCAATAAATATGGAATTC  1081
      ||||||||||||||||||||||||||||||||||||
seq2  GCAACCGGTCCATTTATTCCAATAAATATGGAATTC  1078