BAC Information

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BAC

Clone NameB6Ng01-140C20
Chromosome7 (Build37)
Map Location 148,279,415 - 148,437,761
singlet/doubletdoublet
Overlap geneSigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488
Upstream genePrap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3
Downstream geneIrf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C20.bB6Ng01-140C20.g
ACCDH938977DH938978
length1,089612
definitionDH938977|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C20, 5' end.DH938978|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,279,415 - 148,280,501)(148,437,151 - 148,437,761)
sequence
gaattctatgcccagacagtctacaagatacatgaataaacaaagaccca
gagtcaaccctctatctgtggtcatggagatagttggccatgtcagattt
gcataagtaatacatcgccttcactcatggtgttagagttaagggtgtag
gtcagaaaggctggccatgggtgtatcccagtggttactctaatcctgga
tgccttcttaccagaagtcctcatggaggctgaagtggcttccattgccc
aatgccagaccatctttcagccactgcactgatggctggggacactgggg
cctagagaacacccaagctgtgcaattcaaagcaacttctctgccaaggg
caagacccaaggcctggtcttcagatggggaaaggaaattaggggccatg
tcacagacacctgcagaaagagtacaacaggtcagcctactgccatgcta
tccacagatgctctaaaaacacttgcaatgggcacacaacagtgatcaca
caacatccatcatgagtcctacaggcaagagcccgggcttgcattctttc
ctcagcagtgggcagttgtgttctgctggccctcatgtgacagccttgtg
ctcagggggaacattaacagaaaggggagtggccagagtcataagtgagc
tgagccagcccagccagcggagcccatctgttggtttatccctggtagac
acgagtccaggctccatactaccccgtcagagtagagccagctcctgcct
ccctcatccttcaggcttctactgaagacctacagggactgtgggtacca
aaggttgaaagaatacatatagcgttcgaacttcttccacagagacaggg
caagctcagagtctgggcttctaggaatctccatctactggcacggactg
ctcttctactcttctgaggccgaattctttccatctttttataaactgtg
atccctggcagaagctggaaaggcatcctgcactacttcatttcacactc
acaccttcaggacctcattaagattcttaggttttattgatttctgcatg
gcttatcttggaagcccttgggcgggcgggggggggggg
gaattcaaggtcacaaagagaaaatcagtttttatacatggctcactcag
aagttaagagcactgactgctcttccagaggtcccagattcaattcccag
tccccacatggaagctcagaactgtctataacttctgttccaggagatct
gactccctcacacatgcaagcaaaacactggtgcacataaattaaataat
taaaaaggggagggggaggaagaaggaaaggggcggggagaaagaaacaa
gtacacagaaactaactaaaactggagctggagagatggctcagtgctaa
aaagcactggttgctctggcagaggacccatgttagggtcccagaatcca
catagggctcacaactgtctgtaactctggttctgtctgtatcatcacct
gctggcctctgtcggcactaagctcacatgtacacaaacatacaggcagg
taaaacactcatatatacaaaattgaagtctttaaggaggtgtggcgtgc
ccgactatatgtccttaaagggttgagacagactccaacctctgatcaaa
tgatgatagcaatattctactcaactgatgaagcaaatgagttgtttaca
tccagcactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148279415_148280501
seq2: B6Ng01-140C20.b_40_1128

seq1  GAATTCTATGCCCAGACAGTCTACAAGATACATGAATAAACAAAGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCCCAGACAGTCTACAAGATACATGAATAAACAAAGACCCA  50

seq1  GAGTCAACCCTCTATCTGTGGTCATGGAGATAGTTGGCCATGTCAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACCCTCTATCTGTGGTCATGGAGATAGTTGGCCATGTCAGATTT  100

seq1  GCATAAGTAATACATCGCCTTCACTCATGGTGTTAGAGTTAAGGGTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTAATACATCGCCTTCACTCATGGTGTTAGAGTTAAGGGTGTAG  150

seq1  GTCAGAAAGGCTGGCCATGGGTGTATCCCAGTGGTTACTCTAATCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGGCTGGCCATGGGTGTATCCCAGTGGTTACTCTAATCCTGGA  200

seq1  TGCCTTCTTACCAGAAGTCCTCATGGAGGCTGAAGTGGCTTCCATTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTACCAGAAGTCCTCATGGAGGCTGAAGTGGCTTCCATTGCCC  250

seq1  AATGCCAGACCATCTTTCAGCCACTGCACTGATGGCTGGGGACACTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGACCATCTTTCAGCCACTGCACTGATGGCTGGGGACACTGGGG  300

seq1  CCTAGAGAACACCCAAGCTGTGCAATTCAAAGCAACTTCTCTGCCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAACACCCAAGCTGTGCAATTCAAAGCAACTTCTCTGCCAAGGG  350

seq1  CAAGACCCAAGGCCTGGTCTTCAGATGGGGAAAGGAAATTAGGGGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCAAGGCCTGGTCTTCAGATGGGGAAAGGAAATTAGGGGCCATG  400

seq1  TCACAGACACCTGCAGAAAGAGTACAACAGGTCAGCCTACTGCCATGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACACCTGCAGAAAGAGTACAACAGGTCAGCCTACTGCCATGCTA  450

seq1  TCCACAGATGCTCTAAAAACACTTGCAATGGGCACACAACAGTGATCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGATGCTCTAAAAACACTTGCAATGGGCACACAACAGTGATCACA  500

seq1  CAACATCCATCATGAGTCCTACAGGCAAGAGCCCGGGCTTGCATTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCATCATGAGTCCTACAGGCAAGAGCCCGGGCTTGCATTCTTTC  550

seq1  CTCAGCAGTGGGCAGTTGTGTTCTGCTGGCCCTCATGTGACAGCCTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTGGGCAGTTGTGTTCTGCTGGCCCTCATGTGACAGCCTTGTG  600

seq1  CTCAGGGGGAACATTAACAGAAAGGGGAGTGGCCAGAGTCATAAGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGGAACATTAACAGAAAGGGGAGTGGCCAGAGTCATAAGTGAGC  650

seq1  TGAGCCAGCCCAGCCAGCGGAGCCCATCTGTTGGTTTATCCCTGGTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCCCAGCCAGCGGAGCCCATCTGTTGGTTTATCCCTGGTAGAC  700

seq1  ACGAGTCCAGGCTCCATACTACCCCGTCAGAGTAGAGCCAGCTCCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTCCAGGCTCCATACTACCCCGTCAGAGTAGAGCCAGCTCCTGCCT  750

seq1  CCCTCATCCTTCAGGCTTCTACTGAAGACCTACAGGGACTGTGGGTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCCTTCAGGCTTCTACTGAAGACCTACAGGGACTGTGGGTACCA  800

seq1  AAGGTTGAAAGAATACATATAGCGTTCGAACTTCTTCCACAGAGACAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGAAAGAATACATATAGCGTTCGAACTTCTTCCACAGAGACAGGG  850

seq1  CAAGC-CAGAGTCTGGGCTTCCAGGAATC-CCATCTACTGGCCACAGACT  898
      ||||| ||||||||||||||| ||||||| ||||||||||| ||| ||||
seq2  CAAGCTCAGAGTCTGGGCTTCTAGGAATCTCCATCTACTGG-CACGGACT  899

seq1  GCCCTCCTACTTCTCTGAGGCCGAACTCTTCCCATCTTTTAGTAAAACTG  948
      || || |||||  |||||||||||| |||| |||||||||  | ||||||
seq2  GCTCTTCTACTCTTCTGAGGCCGAATTCTTTCCATCTTTTTAT-AAACTG  948

seq1  TGA-CCCTGGCAGGAGGCTGGAGAGGCACCCCGCACTACTTCATTTCACA  997
      ||| |||||||| || |||||| ||||| || ||||||||||||||||||
seq2  TGATCCCTGGCA-GAAGCTGGAAAGGCATCCTGCACTACTTCATTTCACA  997

seq1  CTCACACCCCCAGGACCTCATTAAGATTCCTAGG-TTTATTGATTCCTGC  1046
      ||||||||  ||||||||||||||||||| |||| |||||||||| ||||
seq2  CTCACACCTTCAGGACCTCATTAAGATTCTTAGGTTTTATTGATTTCTGC  1047

seq1  ATGGCTCATCT--GGAGGCCTTGGGCGGGGCGGGGGGGGGGGG  1087
      |||||| ||||  | || |||||||| ||||||||||||||||
seq2  ATGGCTTATCTTGGAAGCCCTTGGGC-GGGCGGGGGGGGGGGG  1089

seq1: chr7_148437151_148437761
seq2: B6Ng01-140C20.g_67_677 (reverse)

seq1  TCAGTGCTGGTTGTTAACAACTCATTTGCTTCATCAGTTGTGTAGAATAT  50
      |||||||||| ||| ||||||||||||||||||||||||| |||||||||
seq2  TCAGTGCTGGATGTAAACAACTCATTTGCTTCATCAGTTGAGTAGAATAT  50

seq1  TGCTATCATCATTTGATCAGAGGTTGGAGTCTGTTTCAACCCATTAAGGA  100
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TGCTATCATCATTTGATCAGAGGTTGGAGTCTGTCTCAACCCTTTAAGGA  100

seq1  CATATAGTCGGGCACGCCACACCTCCTTAAAGACTTCAATTTTGTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTCGGGCACGCCACACCTCCTTAAAGACTTCAATTTTGTATATA  150

seq1  TGAGTGTTTTACCTGCCTGTATGTTTGTGTACATGTGAGCTTAGTGCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTTACCTGCCTGTATGTTTGTGTACATGTGAGCTTAGTGCCGA  200

seq1  CAGAGGCCAGCAGGTGATGATACAGACAGAACCAGAGTTACAGACAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCAGCAGGTGATGATACAGACAGAACCAGAGTTACAGACAGTTG  250

seq1  TGAGCCCTATGTGGATTCTGGGACCCTAACATGGGTCCTCTGCCAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTATGTGGATTCTGGGACCCTAACATGGGTCCTCTGCCAGAGCA  300

seq1  ACCAGTGCTTTTTAGCACTGAGCCATCTCTCCAGCTCCAGTTTTAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCTTTTTAGCACTGAGCCATCTCTCCAGCTCCAGTTTTAGTTAG  350

seq1  TTTCTGTGTACTTGTTTCTTTCTCCCCGCCCCTTTCCTTCTTCCTCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTACTTGTTTCTTTCTCCCCGCCCCTTTCCTTCTTCCTCCCCC  400

seq1  TCCCCTTTTTAATTATTTAATTTATGTGCACCAGTGTTTTGCTTGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTTTAATTATTTAATTTATGTGCACCAGTGTTTTGCTTGCATGT  450

seq1  GTGAGGGAGTCAGATCTCCTGGAACAGAAGTTATAGACAGTTCTGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGTCAGATCTCCTGGAACAGAAGTTATAGACAGTTCTGAGCTT  500

seq1  CCATGTGGGGACTGGGAATTGAATCTGGGACCTCTGGAAGAGCAGTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGGGACTGGGAATTGAATCTGGGACCTCTGGAAGAGCAGTCAGT  550

seq1  GCTCTTAACTTCTGAGTGAGCCATGTATAAAAACTGATTTTCTCTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAACTTCTGAGTGAGCCATGTATAAAAACTGATTTTCTCTTTGTG  600

seq1  ACCTTGAATTC  611
      |||||||||||
seq2  ACCTTGAATTC  611