BAC Information

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BAC

Clone NameB6Ng01-140D20
Chromosome7 (Build37)
Map Location 78,020,213 - 78,157,839
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D20.bB6Ng01-140D20.g
ACCDH939023DH939024
length1,0551,061
definitionDH939023|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D20, 5' end.DH939024|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,156,783 - 78,157,839)(78,020,213 - 78,021,289)
sequence
gaattctaccctcgaaagagaggtaaggagattatgaaagatgagattaa
aatgggaacaaagtgatagattcagctttgcctacttaattttttactta
agttatgtttgatgaaaatagggaatatgtggataagagccagaagaaag
tatcttcctttgacttgatttttcagatttttaccagaaagaatttgaag
taagaggatatttggggactcaactagtgtttcatggcctgaccagaaag
gtaacttctagcaccttctttaaattatggatgcaataaagtggagactt
tatcactctagcagagcttagggactcttgatataatgttctcattaatt
aaaaaatatacttttttatactttatatgagatgtgtacttccatctcag
cttctgggatggctttcttagttcagagccctcctgcagtttgtctacag
cactggttctcaacctgctggtctggacccctgtgcaggaaaatgacttt
ttcaccaggaggcctaagaccatagcaaaaaacaaaaattttcattatga
tttttaaaagtaacaaaattacagttatgaagtagcaacaaaaataactt
tatggttgggagggtcctccaacatgagaaactgtattaaagggtctaag
cattaggaaggcttaaaaaacactggtgtagggtaacctgtcactgacaa
gaatagaatctgattctgaactattgagaatgctatactgtgtgaagata
ctagtcctttcctcagttcctctgtgtatggacactgctttatccataaa
caaaagacctaaaagatacctcttccagtgagtcaggtgacaaggctaga
cctcatcacatgtgaacactttagcccttgaagctctatagcaagctttc
tttctttgggagattttgtttctggtatgataggatatttctaatccttc
cagatgctaaaaagcataatcagacccaatctatattttcttctctttct
ttctatgtttgactttgaccaatgtgaaaatgttcctgccttagaagagt
caatt
gaattctttgtccaaattagaactctgcttgctgccttctcaactgtgca
atggccaacaggtcagagaacaaaccagagtgccacttttcaggcatctt
ccaccttgtgtaaatgggtctcttagggatgaggtggtcactgttcttat
gtgcttttgactctgtggtttatgtatcatagctccaggtagaatctttg
tcagggtgcctcagggtgcatgtgtacatgcaacctacactgttagtcct
taagcaccttccctcttctcttctctgtgagacaacttctcttattggtc
tgcagcttcagcaagtagtctaggttagccgactggtgagcatgcaggga
ttctcttgtctctgcctcccatctcaacactgctaggtttacaagcaccc
tgctttctatgttggttctagagatggctttgttctctgtgtcttatggc
aagggctttactgactcagccatgtcctcagcctcaccttcgagaatctt
aagggatgttccgatgccactgtgaggtttagacacaacagtgagggaag
cactggacccaagaaataccagactcttaagccgaccacaatggtaagag
gcagagcaggatcccaaccgagactcccagcagctcccatggccacgcac
aaggagatgttggacaatgccccaccatccatttggtcaatgcttcagga
aaagctcatacccagttggtcgtctgtgtgctagttaacctgaccagtga
cagacctgagttgtagggctcacctcagagatgccttaaactagaagcca
aatctcccagcagatacacagggatttcctctctgctcctcacaaatact
gaaaatttttttgaaattttcattatgagaagaaaatttatatttaaagg
taatttgacctgtacatgcatataccatgatatttgatgaaactatagca
aatgtatatagagcatagtctgagatattatttcttatcatttctggaaa
tatttcctcagcacgggtgagtgcactctacaaatgcctgactctcaaga
tgcccatagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78156783_78157839
seq2: B6Ng01-140D20.b_49_1103 (reverse)

seq1  AATTGACTCTTCTAAGGCAGGAACATTTTCACATTGGTCAAAGTCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTGACTCTTCTAAGGCAGGAACATTTTCACATTGGTCAAAGTC-AAAC  49

seq1  ATAGAAAGAAAGAGAAGAAAATATAGATTGGGTCTTGATTATGCTTTTTA  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAGAAAGAAAGAGAAGAAAATATAGATTGGGTC-TGATTATGCTTTTTA  98

seq1  GCATCTGGAAGGATTAGAAATATTCTTATCATACCAGAAACAAAATCTCC  150
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  GCATCTGGAAGGATTAGAAATA-TCCTATCATACCAGAAACAAAATCTCC  147

seq1  CAAAG-AAGGAAGCTTGCTATAGAGCTTCAAGGGCTAAAGTGTTCACATG  199
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGAAAGCTTGCTATAGAGCTTCAAGGGCTAAAGTGTTCACATG  197

seq1  TGATGAGGTCTAGCCTTGTCACCTGACTCACTGGAAGAGGTATCTTTTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGTCTAGCCTTGTCACCTGACTCACTGGAAGAGGTATCTTTTAG  247

seq1  GTCTTTTGTTTATGGATAAAGCAGTGTCCATACACAGAGGAACTGAGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGTTTATGGATAAAGCAGTGTCCATACACAGAGGAACTGAGGAA  297

seq1  AGGACTAGTATCTTCACACAGTATAGCATTCTCAATAGTTCAGAATCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGTATCTTCACACAGTATAGCATTCTCAATAGTTCAGAATCAGA  347

seq1  TTCTATTCTTGTCAGTGACAGGTTACCCTACACCAGTGTTTTTTAAGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTTGTCAGTGACAGGTTACCCTACACCAGTGTTTTTTAAGCCT  397

seq1  TCCTAATGCTTAGACCCTTTAATACAGTTTCTCATGTTGGAGGACCCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGCTTAGACCCTTTAATACAGTTTCTCATGTTGGAGGACCCTCC  447

seq1  CAACCATAAAGTTATTTTTGTTGCTACTTCATAACTGTAATTTTGTTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAAAGTTATTTTTGTTGCTACTTCATAACTGTAATTTTGTTACT  497

seq1  TTTAAAAATCATAATGAAAATTTTTGTTTTTTGCTATGGTCTTAGGCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCATAATGAAAATTTTTGTTTTTTGCTATGGTCTTAGGCCTC  547

seq1  CTGGTGAAAAAGTCATTTTCCTGCACAGGGGTCCAGACCAGCAGGTTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAAAAGTCATTTTCCTGCACAGGGGTCCAGACCAGCAGGTTGAG  597

seq1  AACCAGTGCTGTAGACAAACTGCAGGAGGGCTCTGAACTAAGAAAGCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGCTGTAGACAAACTGCAGGAGGGCTCTGAACTAAGAAAGCCAT  647

seq1  CCCAGAAGCTGAGATGGAAGTACACATCTCATATAAAGTATAAAAAAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCTGAGATGGAAGTACACATCTCATATAAAGTATAAAAAAGTA  697

seq1  TATTTTTTAATTAATGAGAACATTATATCAAGAGTCCCTAAGCTCTGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAATTAATGAGAACATTATATCAAGAGTCCCTAAGCTCTGCTA  747

seq1  GAGTGATAAAGTCTCCACTTTATTGCATCCATAATTTAAAGAAGGTGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATAAAGTCTCCACTTTATTGCATCCATAATTTAAAGAAGGTGCTA  797

seq1  GAAGTTACCTTTCTGGTCAGGCCATGAAACACTAGTTGAGTCCCCAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACCTTTCTGGTCAGGCCATGAAACACTAGTTGAGTCCCCAAATA  847

seq1  TCCTCTTACTTCAAATTCTTTCTGGTAAAAATCTGAAAAATCAAGTCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTACTTCAAATTCTTTCTGGTAAAAATCTGAAAAATCAAGTCAAA  897

seq1  GGAAGATACTTTCTTCTGGCTCTTATCCACATATTCCCTATTTTCATCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATACTTTCTTCTGGCTCTTATCCACATATTCCCTATTTTCATCAA  947

seq1  ACATAACTTAAGTAAAAAATTAAGTAGGCAAAGCTGAATCTATCACTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTTAAGTAAAAAATTAAGTAGGCAAAGCTGAATCTATCACTTTG  997

seq1  TTCCCATTTTAATCTCATCTTTCATAATCTCCTTACCTCTCTTTCGAGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTTAATCTCATCTTTCATAATCTCCTTACCTCTCTTTCGAGGG  1047

seq1  TAGAATTC  1057
      ||||||||
seq2  TAGAATTC  1055

seq1: chr7_78020213_78021289
seq2: B6Ng01-140D20.g_66_1126

seq1  GAATTCTTTGTCCAAATTAGAACTCTGCTTGCTGCCTTCTCAACTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTCCAAATTAGAACTCTGCTTGCTGCCTTCTCAACTGTGCA  50

seq1  ATGGCCAACAGGTCAGAGAACAAACCAGAGTGCCACTTTTCAGGCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAACAGGTCAGAGAACAAACCAGAGTGCCACTTTTCAGGCATCTT  100

seq1  CCACCTTGTGTAAATGGGTCTCTTAGGGATGAGGTGGTCACTGTTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGTGTAAATGGGTCTCTTAGGGATGAGGTGGTCACTGTTCTTAT  150

seq1  GTGCTTTTGACTCTGTGGTTTATGTATCATAGCTCCAGGTAGAATCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTGACTCTGTGGTTTATGTATCATAGCTCCAGGTAGAATCTTTG  200

seq1  TCAGGGTGCCTCAGGGTGCATGTGTACATGCAACCTACACTGTTAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGCCTCAGGGTGCATGTGTACATGCAACCTACACTGTTAGTCCT  250

seq1  TAAGCACCTTCCCTCTTCTCTTCTCTGTGAGACAACTTCTCTTATTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCTTCCCTCTTCTCTTCTCTGTGAGACAACTTCTCTTATTGGTC  300

seq1  TGCAGCTTCAGCAAGTAGTCTAGGTTAGCCGACTGGTGAGCATGCAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTCAGCAAGTAGTCTAGGTTAGCCGACTGGTGAGCATGCAGGGA  350

seq1  TTCTCTTGTCTCTGCCTCCCATCTCAACACTGCTAGGTTTACAAGCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTCTCTGCCTCCCATCTCAACACTGCTAGGTTTACAAGCACCC  400

seq1  TGCTTTCTATGTTGGTTCTAGAGATGGCTTTGTTCTCTGTGTCTTATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTATGTTGGTTCTAGAGATGGCTTTGTTCTCTGTGTCTTATGGC  450

seq1  AAGGGCTTTACTGACTCAGCCATGTCCTCAGCCTCACCTTCGAGAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTTACTGACTCAGCCATGTCCTCAGCCTCACCTTCGAGAATCTT  500

seq1  AAGGGATGTTCCGATGCCACTGTGAGGTTTAGACACAACAGTGAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGTTCCGATGCCACTGTGAGGTTTAGACACAACAGTGAGGGAAG  550

seq1  CACTGGACCCAAGAAATACCAGACTCTTAAGCCGACCACAATGGTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGACCCAAGAAATACCAGACTCTTAAGCCGACCACAATGGTAAGAG  600

seq1  GCAGAGCAGGATCCCAACCGAGACTCCCAGCAGCTCCCATGGCCACGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGGATCCCAACCGAGACTCCCAGCAGCTCCCATGGCCACGCAC  650

seq1  AAGGAGATGTTGGACAATGCCCCACCATCCATTTGGTCAATGCTTCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGTTGGACAATGCCCCACCATCCATTTGGTCAATGCTTCAGGA  700

seq1  AAAGCTCATACCCAGTTGGTCGTCTGTGTGCTAGTTAACCTGACCAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATACCCAGTTGGTCGTCTGTGTGCTAGTTAACCTGACCAGTGA  750

seq1  CAGACCTGAGTTGTAGGGCTCACCTCAGAGATGCCTTAAACTAGAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGAGTTGTAGGGCTCACCTCAGAGATGCCTTAAACTAGAAGCCA  800

seq1  AATCTCCCAGCAGATAACACAGGGATTTCCTCTCTGCTCCTCACAAATAC  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATCTCCCAGCAGAT-ACACAGGGATTTCCTCTCTGCTCCTCACAAATAC  849

seq1  TGAAAATTTTTTTGAAATTTTCCATTATGAGAAGAAAATTTAATATTTAA  900
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  TGAAAATTTTTTTGAAATTTT-CATTATGAGAAGAAAATTT-ATATTTAA  897

seq1  AGGTAATTTGACCTGTACATGCATATACCATGAATATTTGATGAAACCTA  950
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  AGGTAATTTGACCTGTACATGCATATACCATG-ATATTTGATGAAA-CTA  945

seq1  TAGCAAATGTATTAATAGAGCATTAGTCTGAGGATATTTATTTCTTATTC  1000
      ||||||||||||  |||||||| |||||||| |||| |||||||||| ||
seq2  TAGCAAATGTAT--ATAGAGCA-TAGTCTGA-GATA-TTATTTCTTA-TC  989

seq1  ATTTTCTGGGATATTATTTCCTCAGCACGTGTGAAGTTGCACTCTACAAA  1050
      | |||||||   | ||||||||||||||| ||||   |||||||||||||
seq2  A-TTTCTGG--AAATATTTCCTCAGCACGGGTGA--GTGCACTCTACAAA  1034

seq1  TGCCTGACTCTCAAGATGCCCATAGAA  1077
      |||||||||||||||||||||||||||
seq2  TGCCTGACTCTCAAGATGCCCATAGAA  1061