BAC Information

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BAC

Clone NameB6Ng01-140N17
Chromosome7 (Build37)
Map Location 88,095,695 - 88,214,215
singlet/doubletdoublet
Overlap geneZfp592, Alpk3
Upstream geneZfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a
Downstream geneSlc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N17.bB6Ng01-140N17.g
ACCDH939472DH939473
length880137
definitionDH939472|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N17, 5' end.DH939473|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,213,341 - 88,214,215)(88,095,695 - 88,095,831)
sequence
gaattcagttgcaacacaccatgtcacacaaagataaagggtacagagaa
gccagtgtctctctagcagatttgctgctggtggcctggtaattgagaca
actatccataaggggggtgggggtagggaacaatcccaaagaatttgttt
acctggctgggctaaccaagtcccttcaggattagggagtgtgacattta
gaaacctatcaagctgttgactaactgaaaaacaaaacaaaacaaacaaa
cattcaaacaaaaggaacaaacaaagcactgtgttcttggaggcacatgg
gtctggcgctttgcaatggtgactttgcagctgaaggtgagtaggccttg
gggcaggtcaggatggggcagagggcagctgggccgggagacatgggaaa
ggaacaatcttggaaccagtgtcccagcactcatgacctggtcccctcag
gtgtcacagggcttcctacttaaaggccatggggagctcactggaaagca
aacagttgtggccttgcttccaaacaagcaaggcacctgcagggtgctaa
gtgttatcccaatggctctgcaggtattgaccctctcagcctcctaacgc
agtgaaggggtagcaatctgctccagtaccaggtactaagaagggggtga
agggaaggttccaagccagctccctgccttcgggatctacagtccgagta
actacactctacatcctctagggctggatactccccaagtcacaaactgt
ttcaactcttaatcatgtgtttaaaagatggtttcaaagatcagtcctcc
atactcagagtatactttgaagggaaaggatctgggatgaagcagagtcc
tggggcttcatttgcctttgttttctgttt
gagcctgggtcccacagtgagaaaggggagaacagaagaggaggagagta
gagccataaagctgatgaaacttgaatgtttaaaaagagaaggaggagaa
agagaaaaaggaggaggaggaggagaagaagaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88213341_88214215
seq2: B6Ng01-140N17.b_45_924 (reverse)

seq1  AAACAGAAAACAAAGAC-AATGAAGCCCCA-GACTCTGC-TCATCCAAGA  47
      ||||||||||||||| | |||||||||||| |||||||| |||||| |||
seq2  AAACAGAAAACAAAGGCAAATGAAGCCCCAGGACTCTGCTTCATCCCAGA  50

seq1  TCCTTCCCCTTC-AAGTATACTCTGAGTATGGAGGACTGATCTTTGAAAC  96
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCTTCAAAGTATACTCTGAGTATGGAGGACTGATCTTTGAAAC  100

seq1  CATCTTTTAAACACATGATTGAAGAGTTG-AACAGTTTGTGACTT-GGGA  144
      |||||||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  CATCTTTTAAACACATGATT-AAGAGTTGAAACAGTTTGTGACTTGGGGA  149

seq1  GTATCCAGCCCTAGAGGATGTAGAGTGTAGTTACTCGGACTGTAGATCCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGCCCTAGAGGATGTAGAGTGTAGTTACTCGGACTGTAGATCCC  199

seq1  GAAGGCAGGGAGCTGGCTTGGAACCTTCCCTTCACCCCCTTCTTAGTACC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGGAGCTGGCTTGGAACCTTCCCTTCACCCCCTTCTTAGTACC  249

seq1  TGGTACTGGAGCAGATTGCTACCCCTTCACTGCGTTAGGAGGCTGAGAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGGAGCAGATTGCTACCCCTTCACTGCGTTAGGAGGCTGAGAGG  299

seq1  GTCAATACCTGCAGAGCCATTGGGATAACACTTAGCACCCTGCAGGTGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATACCTGCAGAGCCATTGGGATAACACTTAGCACCCTGCAGGTGCC  349

seq1  TTGCTTGTTTGGAAGCAAGGCCACAACTGTTTGCTTTCCAGTGAGCTCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTGGAAGCAAGGCCACAACTGTTTGCTTTCCAGTGAGCTCCC  399

seq1  CATGGCCTTTAAGTAGGAAGCCCTGTGACACCTGAGGGGACCAGGTCATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTTTAAGTAGGAAGCCCTGTGACACCTGAGGGGACCAGGTCATG  449

seq1  AGTGCTGGGACACTGGTTCCAAGATTGTTCCTTTCCCATGTCTCCCGGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGACACTGGTTCCAAGATTGTTCCTTTCCCATGTCTCCCGGCC  499

seq1  CAGCTGCCCTCTGCCCCATCCTGACCTGCCCCAAGGCCTACTCACCTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCCTCTGCCCCATCCTGACCTGCCCCAAGGCCTACTCACCTTCA  549

seq1  GCTGCAAAGTCACCATTGCAAAGCGCCAGACCCATGTGCCTCCAAGAACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAAGTCACCATTGCAAAGCGCCAGACCCATGTGCCTCCAAGAACA  599

seq1  CAGTGCTTTGTTTGTTCCTTTTGTTTGAATGTTTGTTTGTTTTGTTTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTGTTTGTTCCTTTTGTTTGAATGTTTGTTTGTTTTGTTTTGT  649

seq1  TTTTCAGTTAGTCAACAGCTTGATAGGTTTCTAAATGTCACACTCCCTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTAGTCAACAGCTTGATAGGTTTCTAAATGTCACACTCCCTAA  699

seq1  TCCTGAAGGGACTTGGTTAGCCCAGCCAGGTAAACAAATTCTTTGGGATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGGACTTGGTTAGCCCAGCCAGGTAAACAAATTCTTTGGGATT  749

seq1  GTTCCCTACCCCCACCCCCCTTATGGATAGTTGTCTCAATTACCAGGCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTACCCCCACCCCCCTTATGGATAGTTGTCTCAATTACCAGGCCA  799

seq1  CCAGCAGCAAATCTGCTAGAGAGACACTGGCTTCTCTGTACCCTTTATCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCAAATCTGCTAGAGAGACACTGGCTTCTCTGTACCCTTTATCT  849

seq1  TTGTGTGACATGGTGTGTTGCAACTGAATTC  875
      |||||||||||||||||||||||||||||||
seq2  TTGTGTGACATGGTGTGTTGCAACTGAATTC  880

seq1: chr7_88095695_88095831
seq2: B6Ng01-140N17.g_78_214

seq1  GAGCCTGGGTCCCACAGTGAGAAAGGGGAGAACAGAAGAGGAGGAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGGTCCCACAGTGAGAAAGGGGAGAACAGAAGAGGAGGAGAGTA  50

seq1  GAGCCATAAAGCTGATGAAACTTGAATGTTTAAAAAGAGAAGGAGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATAAAGCTGATGAAACTTGAATGTTTAAAAAGAGAAGGAGGAGAA  100

seq1  AGAGAAAAAGGAGGAGGAGGAGGAGAAGAAGAGGAAG  137
      |||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAGGAGGAGGAGGAGGAGAAGAAGAGGAAG  137