BAC Information

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BAC

Clone NameB6Ng01-141N11
Chromosome7 (Build37)
Map Location 7,013,646 - 7,133,223
singlet/doubletdoublet
Overlap geneLOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418
Upstream geneNlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
Downstream geneBC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N11.bB6Ng01-141N11.g
ACCDH940192DH940193
length1,1051,104
definitionDH940192|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N11, 5' end.DH940193|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,132,114 - 7,133,223)(7,013,646 - 7,014,655)
sequence
gaattcaggtcctctggaagaagagccactgctcttaactgctgcaccac
ttcccccgctccttatgtttgcatttctatatattgtgcacacaagtgag
tctgtgtacatttgcacatgtgcacagatgctagagagggtgtcaaacct
cctggagctggtttatgaactgtgggctgcctgatgtaggtgctgggaat
caaattggttctctgcaagagtagcaagtgctctgaaccagagggtcatt
tctctagctccttcctgtctttctcccccttctgcctccctcctaacctt
tttattccttcatagcatgggaagggaggctaactcttaatagatggcat
aaaacttaactgagaacatgctgtttagttgctgttagaatagtccagat
cccacactgcaaaccatgtctccaagaatagactcctctgccttatctat
cctggtcatattctagatgagaaggccatatcctgggaatggagagatgt
ctcagtggttaagagtgagcacacctcttccagaagacccaagtttggtt
cccagcacccacagccatctataactctggttctaggggatgtactcatg
tacatgtttccttcctctgactcatctctttcttacaccctcatcctcag
cacctgctgtttacccatgccaccctgaatgatgcataaatatccttctc
tcacaaatttcagaaataagccctattttcaatggcattcaactctccat
gctgccattcagtcatctctagaaattaagacccatggtgcatataaagg
aaagtgcaacaacaagcagggccactcagatggaagagcaaaggctgttc
cctgtattacgctgtagttgctgcctggagtactgatcaacagtgtttcc
tagctgggcttttaatgccagcatggctgtctttggtaggcacttgtttc
tgcatcatttgacttaaaactacaataggtcatagtgtatggtaagtggt
atgtatcttaatatatctttgggcctaaggactgaggcacttgcatgttc
tttggacctgtttagatctgagacatatagtaggtagggtggggtggtat
agctg
gaattcagtagaaattcagtaagaaggttatctattcagtaacattcaaa
tttacttctaatagagatggtgaaactaattaggcattacaaagaacgga
gcaggaatagctcagggctggtctgcagaatgtttacttgggacaatagt
cagtcttacccagacaagggaattcacaatggcctagcaaataggtgggt
ttaccatgaaagagttagggaatccccctgaggcaggtttcttcactagg
cccaaagaaacagcataatcaggcatttactaagaacccctggtggtggg
tttaacaatagactagcattacatctggctccattcttagtggtaaacag
cagcggcctggtccctgccatcttttgatgtatacattctttatgttttg
tgtcactgtaactcggcggatgtatctcgcctggtttcttgttattcttc
tgtataaaaagtttgatgctcgacttgacaaagtacattcagattctaca
caatctcatgtgtcacttctgttcgtcattcattcgatggctccttgtcc
acctgcaactagagacccgttctacgcagacagagaccaaaaagggtctg
tagcaaatcaacagcactcccatagtttactgtttgatctacactgatag
taacctcataggaagctgtctcatggaaatccacggaggttaactgtagt
ctcccctcccccagcctgaaacctgcttgctcaggggtggagcttcccgc
tcaatcgttctgccatgcccactgctggaacctgccgctttgctgcttgg
agccacacacgtgttcaccctgctactggaccccgagacagttggcggga
atcgggttcccttcccccttcctttataactgaatgtcggaactagtaaa
tttgagctttgaacaggatgaacttgtcttggcttcgtttcttctttccc
tcgtctagttcttcttagctcgagtgtcatctcagtcgaccattcacgtc
ttgtcacgtgcgagctgctggtctgctgcacagtaataatgtgttatgca
cattgagggtcttatgcttcctgtgtctggacttgcatcacaagagggtt
ttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7132114_7133223
seq2: B6Ng01-141N11.b_49_1153 (reverse)

seq1  CAGCTATACCACCCCACCCTACTCTTACTATATGGTCCTCAGGACTAAAC  50
      |||||||||||||||||||||  | |||||||||   |||||  ||||||
seq2  CAGCTATACCACCCCACCCTA--CCTACTATATG--TCTCAGATCTAAAC  46

seq1  AGGTCCAGAG-ACATGCAAGTTGCCTTCAGTCCTTAGGCCCAAAGATATA  99
      ||||||| || ||||||||| |||| ||||||||||||||||||||||||
seq2  AGGTCCAAAGAACATGCAAG-TGCC-TCAGTCCTTAGGCCCAAAGATATA  94

seq1  TTAAGATACATACCACTTACCATACACTATGACCTATTGTAGTTTTAAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATACATACCACTTACCATACACTATGACCTATTGTAGTTTTAAGT  144

seq1  CAAATGGTGCAGAAACAAGTGCCTACCAAAGACAGCCATGCTGGCATTAA  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATGCAGAAACAAGTGCCTACCAAAGACAGCCATGCTGGCATTAA  194

seq1  AAGGCCAGCTAGGGAACACTGTTGATCAGTACTCCAGGCAGCAACTACAG  249
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGCTAGGAAACACTGTTGATCAGTACTCCAGGCAGCAACTACAG  244

seq1  CGTAATACAGGGAACAGCCTTTGCTCTTCCATCTGAGTGGCCCTGCTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATACAGGGAACAGCCTTTGCTCTTCCATCTGAGTGGCCCTGCTTGT  294

seq1  TGTTGCACTTTCCTTTATATGCACCATGGGTCTTAATTTCTAGAGATGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCACTTTCCTTTATATGCACCATGGGTCTTAATTTCTAGAGATGAC  344

seq1  TGAATGGCAGCATGGAGAGTTGAATGCCATTGAAAATAGGGCTTATTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCAGCATGGAGAGTTGAATGCCATTGAAAATAGGGCTTATTTCT  394

seq1  GAAATTTGTGAGAGAAGGATATTTATGCATCATTCAGGGTGGCATGGGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTGAGAGAAGGATATTTATGCATCATTCAGGGTGGCATGGGTA  444

seq1  AACAGCAGGTGCTGAGGATGAGGGTGTAAGAAAGAGATGAGTCAGAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGTGCTGAGGATGAGGGTGTAAGAAAGAGATGAGTCAGAGGAA  494

seq1  GGAAACATGTACATGAGTACATCCCCTAGAACCAGAGTTATAGATGGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGTACATGAGTACATCCCCTAGAACCAGAGTTATAGATGGCTG  544

seq1  TGGGTGCTGGGAACCAAACTTGGGTCTTCTGGAAGAGGTGTGCTCACTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGGAACCAAACTTGGGTCTTCTGGAAGAGGTGTGCTCACTCT  594

seq1  TAACCACTGAGACATCTCTCCATTCCCAGGATATGGCCTTCTCATCTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGAGACATCTCTCCATTCCCAGGATATGGCCTTCTCATCTAGA  644

seq1  ATATGACCAGGATAGATAAGGCAGAGGAGTCTATTCTTGGAGACATGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCAGGATAGATAAGGCAGAGGAGTCTATTCTTGGAGACATGGTT  694

seq1  TGCAGTGTGGGATCTGGACTATTCTAACAGCAACTAAACAGCATGTTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGGGATCTGGACTATTCTAACAGCAACTAAACAGCATGTTCTC  744

seq1  AGTTAAGTTTTATGCCATCTATTAAGAGTTAGCCTCCCTTCCCATGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTTTTATGCCATCTATTAAGAGTTAGCCTCCCTTCCCATGCTAT  794

seq1  GAAGGAATAAAAAGGTTAGGAGGGAGGCAGAAGGGGGAGAAAGACAGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATAAAAAGGTTAGGAGGGAGGCAGAAGGGGGAGAAAGACAGGAA  844

seq1  GGAGCTAGAGAAATGACCCTCTGGTTCAGAGCACTTGCTACTCTTGCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGAGAAATGACCCTCTGGTTCAGAGCACTTGCTACTCTTGCAGA  894

seq1  GAACCAATTTGATTCCCAGCACCTACATCAGGCAGCCCACAGTTCATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAATTTGATTCCCAGCACCTACATCAGGCAGCCCACAGTTCATAAA  944

seq1  CCAGCTCCAGGAGGTTTGACACCCTCTCTAGCATCTGTGCACATGTGCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAGGAGGTTTGACACCCTCTCTAGCATCTGTGCACATGTGCAA  994

seq1  ATGTACACAGACTCACTTGTGTGCACAATATATAGAAATGCAAACATAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACAGACTCACTTGTGTGCACAATATATAGAAATGCAAACATAAG  1044

seq1  GAGCGGGGGAAGTGGTGCAGCAGTTAAGAGCAGTGGCTCTTCTTCCAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGGGAAGTGGTGCAGCAGTTAAGAGCAGTGGCTCTTCTTCCAGAG  1094

seq1  GACCTGAATTC  1110
      |||||||||||
seq2  GACCTGAATTC  1105

seq1: chr7_7013646_7014655
seq2: B6Ng01-141N11.g_177_1173

seq1  TAGCTCAGGGCTGGTCTGCAGAATGTTTACTTGGGACAATAGTCAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGGGCTGGTCTGCAGAATGTTTACTTGGGACAATAGTCAGTCTT  50

seq1  ACCCAGACAAGGGAATTCACAATGGCCTAGCAAATAGGTGGGTTTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACAAGGGAATTCACAATGGCCTAGCAAATAGGTGGGTTTACCAT  100

seq1  GAAAGAGTTAGGGAATCCCCCTGAGGCAGGTTTCTTCACTAGGCCCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTAGGGAATCCCCCTGAGGCAGGTTTCTTCACTAGGCCCAAAG  150

seq1  AAACAGCATAATCAGGCATTTACTAAGAACCCCTGGTGGTGGGTTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATAATCAGGCATTTACTAAGAACCCCTGGTGGTGGGTTTAACA  200

seq1  ATAGACTAGCATTACATCTGGCTCCATTCTTAGTGGTAAACAGCAGCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTAGCATTACATCTGGCTCCATTCTTAGTGGTAAACAGCAGCGGC  250

seq1  CTGGTCCCTGCCATCTTTTGATGTATACATTCCTTATGTTTTGTGTCACT  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGTCCCTGCCATCTTTTGATGTATACATTCTTTATGTTTTGTGTCACT  300

seq1  GTAACTCGGCGGATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCGGCGGATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAA  350

seq1  AAAGTTTGATGCTCGACTTGACAAAGTACATTCAGATTCTACACAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGATGCTCGACTTGACAAAGTACATTCAGATTCTACACAATCTC  400

seq1  ATGTGTCACTTCTGTTCGTCATTCATTCGATGGCTCCTTGTCCACCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACTTCTGTTCGTCATTCATTCGATGGCTCCTTGTCCACCTGCA  450

seq1  ACTAGAGACCCGTTCTACGCAGACAGAGACCAAAAAGGGTCTGTAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGACCCGTTCTACGCAGACAGAGACCAAAAAGGGTCTGTAGCAAA  500

seq1  TCAACAGCACTCCCATAGTTTACTGTTTGATCTACACTGATAGTAACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCACTCCCATAGTTTACTGTTTGATCTACACTGATAGTAACCTC  550

seq1  ATAGGAAGCTGTCTCATGGAAATCCACGGAGGTTAACTGTAGTCTCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGCTGTCTCATGGAAATCCACGGAGGTTAACTGTAGTCTCCCCT  600

seq1  CCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCCGCTCAATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGGAGCTTCCCGCTCAATCG  650

seq1  TTCTGCCATGCCCACTGCTGGAACCTGCCGCTTTGCTGCTTGGAGCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATGCCCACTGCTGGAACCTGCCGCTTTGCTGCTTGGAGCCACA  700

seq1  CACGTGTTCACCCTGCTACTGGACCCCGAGACCAGTTGGCGGGAATCGGG  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACGTGTTCACCCTGCTACTGGACCCCGAGA-CAGTTGGCGGGAATCGGG  749

seq1  TTCCC-TCCCCCTTCCTTTATAACTGAATGTCGGAACTAGTAAAATTGAG  799
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCCCTTCCCCCTTCCTTTATAACTGAATGTCGGAACTAGTAAATTTGAG  799

seq1  CTTTGAACAGGATGAACTTGTCTTGGCTCCGTTTCTTCTTTCCCCCGTCT  849
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  CTTTGAACAGGATGAACTTGTCTTGGCTTCGTTTCTTCTTTCCCTCGTCT  849

seq1  AGTTCCTCCCTTAGCTCGAGTGGCCATCTCAGTCGAACCATTCACGTTCA  899
      ||||| |  |||||||||||| | ||||||||||| |||||||||| || 
seq2  AGTTCTT--CTTAGCTCGAGT-GTCATCTCAGTCG-ACCATTCACG-TCT  894

seq1  TGTTCACGTTGCGAGCTGCTGGCCGGCTGCAACAGTTAACAATGTGTTCA  949
      || ||||| ||||||||||||| | ||||| |||| ||| |||||||| |
seq2  TG-TCACG-TGCGAGCTGCTGGTCTGCTGC-ACAG-TAATAATGTGTT-A  939

seq1  TGCACATTGAGGGTCTTCATGCTTCCCTTGTTCTTGTACTTGCATACAC-  998
      ||||||||||||||||| ||||||||  |||   || |||||||| ||| 
seq2  TGCACATTGAGGGTCTT-ATGCTTCC--TGTGTCTGGACTTGCAT-CACA  985

seq1  AGAGGGTTTTGT  1010
      ||||||||||||
seq2  AGAGGGTTTTGT  997