BAC Information

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BAC

Clone NameB6Ng01-143F06
Chromosome7 (Build37)
Map Location 53,572,827 - 53,734,246
singlet/doubletdoublet
Overlap geneMyod1, Kcnc1, Sergef
Upstream geneTrpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
Downstream geneTph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143F06.bB6Ng01-143F06.g
ACCDH941293DH941294
length1,106326
definitionDH941293|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F06, 5' end.DH941294|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,572,827 - 53,573,946)(53,733,922 - 53,734,246)
sequence
gaattctgaggcattgttgataaaatacacagacctgttacagtaggtct
ctcctctcacccgccaacactgttgggaagagtgttctcagcacacacag
caattctaattaagcaatgctggttgttatacatactatcattgtttatt
tgaaaataatggacgatctcaaaatgctgtcttagttgaaagagaaaggt
agacagaaggccttcagtgaaacaccatttatcaagaaaaaggaagatat
ttctaattaacaattcctgggatggttcatgaagatgttattctcataat
tgaaagctgatatgtaatagtataaacacacacacacacacacacacaca
cacgaacttttatgaattaaaaccactcatgatccctgttttcatcacaa
agagcacctgatacccagacttataaacaactacaaatttgggcaaaata
tgggaaatatgttttcagactttagacaaaagacaagtcaaagctgaggc
tctcaaaagaagagaaacaataaatcaaacaattcttactagacagctcc
aatttcttcccattccactttctggaatgaggaacagcaagagacatcca
agcagagcctggtggtctcactgaggtgaagagatgagacccagttcaag
tagactttagtaactggactctctagggcagagagccagagataggggag
ccaggcagaaggaaaggaattccagaatttgaaaaaacaaggcagttgct
gaacactgtcctgtactcctgtagtatagacaagccacacagttaggcaa
agcaatagtcatcggtgtaaactgaacaatttctgaagtctacctggggc
tatgaggcgttaatttcatacttcattggagcagacacacctcattgaaa
atctagcacacttaactgagccacttcttacttataggtagaatgaaatt
aaccctagagtagagggctagaactagcccaattcacattggaaataact
ttcttagttagggttttatgaatgtaaagagataacatgatacgaatgta
taaggaaacatctaattaggcgtctacaggtttcggagtttagtccattc
atcatg
agagacatgaggggtgtgctctgcagctgtctgatgctctcagtcacctt
gaagccaccaagctggtcacctgcctttcttactgacagtaagaatcatg
tcaggccttcatgagcatgcccctttctccatgatctgtggccctttcct
ggctaacgtccttatggctgatttcaagaaaacccctgttccaagcctgg
ggacttaatttgttcaacatgtgacccttttggttgtggctgccactgaa
actctggacctaactaaaataggatcatcctctttctgacgttgtttgag
cactcttggtctaacttttgtctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53572827_53573946
seq2: B6Ng01-143F06.b_45_1150

seq1  GAATTCTGAGGCATTGTTGATAAAATACACAGACCTGTTACAGTAGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGCATTGTTGATAAAATACACAGACCTGTTACAGTAGGTCT  50

seq1  CTCCTCTCACCCGCCAACACTGTTGGGAAGAGTGTTCTCAGCACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCACCCGCCAACACTGTTGGGAAGAGTGTTCTCAGCACACACAG  100

seq1  CAATTCTAATTAAGCAATGCTGGTTGTTATACATACTATCATTGTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAATTAAGCAATGCTGGTTGTTATACATACTATCATTGTTTATT  150

seq1  TGAAAATAATGGACGATCTCAAAATGCTGTCTTAGTTGAAAGAGAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATGGACGATCTCAAAATGCTGTCTTAGTTGAAAGAGAAAGGT  200

seq1  AGACAGAAGGCCTTCAGTGAAACACCATTTATCAAGAAAAAGGAAGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAGGCCTTCAGTGAAACACCATTTATCAAGAAAAAGGAAGATAT  250

seq1  TTCTAATTAACAATTCCTGGGATGGTTCATGAAGATGTTATTCTCATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTAACAATTCCTGGGATGGTTCATGAAGATGTTATTCTCATAAT  300

seq1  TGAAAGCTGATATGTAATAGTATAAACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTGATATGTAATAGTATAAACACACACACACACACACACACACA  350

seq1  CACGAACTTTTATGAATTAAAACCACTCATGATCCCTGTTTTCATCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACTTTTATGAATTAAAACCACTCATGATCCCTGTTTTCATCACAA  400

seq1  AGAGCACCTGATACCCAGACTTATAAACAACTACAAATTTGGGCAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTGATACCCAGACTTATAAACAACTACAAATTTGGGCAAAATA  450

seq1  TGGGAAATATGTTTTCAGACTTTAGACAAAAGACAAGTCAAAGCTGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATATGTTTTCAGACTTTAGACAAAAGACAAGTCAAAGCTGAGGC  500

seq1  TCTCAAAAGAAGAGAAACAATAAATCAAACAATTCTTACTAGACAGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGAAGAGAAACAATAAATCAAACAATTCTTACTAGACAGCTCC  550

seq1  AATTTCTTCCCATTCCACTTTCTGGAATGAGGAACAGCAAGAGACATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTCCCATTCCACTTTCTGGAATGAGGAACAGCAAGAGACATCCA  600

seq1  AGCAGAGCCTGGTGGTCTCACTGAGGTGAAGAGATGAGACCCAGTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCTGGTGGTCTCACTGAGGTGAAGAGATGAGACCCAGTTCAAG  650

seq1  TAGACTTTAGTAACTGGACTCTCTAGGGCAGAGAGCCAGAGATAGGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTAGTAACTGGACTCTCTAGGGCAGAGAGCCAGAGATAGGGGAG  700

seq1  CCAGGCAGAAGGAAAGGAATTCCAGAATTTGAAAAAAACAAGGCAGTTGC  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGGCAGAAGGAAAGGAATTCCAGAATTTG-AAAAAACAAGGCAGTTGC  749

seq1  TGAACACTGTCCTGTACTCCTGTAGTATAGACAAGCCACACAGTTAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTGTCCTGTACTCCTGTAGTATAGACAAGCCACACAGTTAGGCA  799

seq1  AAGCAATAGTCATCGGTGTAAACTGAACAATTTCTGAAGTCTACCTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAGTCATCGGTGTAAACTGAACAATTTCTGAAGTCTACCTGGGG  849

seq1  CTATGAGGCGTTAATTTCATACTTCATTGGAGCAGACACACCTCATTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTATGAGGCGTTAATTTCATACTTCATTGGAGCAGACACACCTCATTGAA  899

seq1  AATCTAGCACACTTAACTGAGCCACTTCTTACTTAGAAGTAAGATGAAAT  950
      ||||||||||||||||||||||||||||||||||| | |||  |||||||
seq2  AATCTAGCACACTTAACTGAGCCACTTCTTACTTATAGGTAGAATGAAAT  949

seq1  TAACCCTAGAGTAGAGGGCTAGAACTAGCCCAATTCAACATTGAAATTAA  1000
      |||||||||||||||||||||||||||||||||||| |||||| || |||
seq2  TAACCCTAGAGTAGAGGGCTAGAACTAGCCCAATTC-ACATTGGAAATAA  998

seq1  CTTTCTTAGTTAGGGTTTTATGAATGTAAAGAGATACCATGATTACAGAA  1050
      |||||||||||||||||||||||||||||||||||| ||||| ||| |||
seq2  CTTTCTTAGTTAGGGTTTTATGAATGTAAAGAGATAACATGA-TAC-GAA  1046

seq1  ATTGTTATAAAGGAAAACATCTAATTAGGGCCGTCTTACA-GTTTCAGAG  1099
        || |||||  | |||||||||||||||  |||| |||| ||||| || 
seq2  --TG-TATAA--GGAAACATCTAATTAGG--CGTC-TACAGGTTTCGGA-  1087

seq1  GTTTAGTCCATTTTCATCATG  1120
      ||||||||||  |||||||||
seq2  GTTTAGTCCA--TTCATCATG  1106

seq1: chr7_53733922_53734246
seq2: B6Ng01-143F06.g_78_403 (reverse)

seq1  CCCAGACAAAAGTTTGACCAAGAGTGCTCAAACAACGTCAGAAAGAGGAT  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAGACAAAAGTTAGACCAAGAGTGCTCAAACAACGTCAGAAAGAGGAT  50

seq1  GATCCTATTTTAGTTAGGTCCCGAGTTTCAGTGGCAGCCACAACCAAAAG  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATCCTATTTTAGTTAGGTCCAGAGTTTCAGTGGCAGCCACAACCAAAAG  100

seq1  GGTCACATGTTGAACAAATTAAGTCCCCAGGCTTGGAACAGGGGTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATGTTGAACAAATTAAGTCCCCAGGCTTGGAACAGGGGTTTTCT  150

seq1  TGAAATCAGCCATAAGGACGTTAGCCAGGAAAGGGCCACAGATCATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGCCATAAGGACGTTAGCCAGGAAAGGGCCACAGATCATGGAG  200

seq1  AAA-CAGCATGCTCATGAAGGCCTGACATGATTCTTACTGTCAGTAAGAA  249
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCATGCTCATGAAGGCCTGACATGATTCTTACTGTCAGTAAGAA  250

seq1  AGGCAGGTGACCAGCTTGGTGGCTTCAAGGTGACTGAGAGCATCAGACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGACCAGCTTGGTGGCTTCAAGGTGACTGAGAGCATCAGACAG  300

seq1  CTGCAGAGCACACCCCTCATGACTCT  325
      ||||||||||||||||||||| ||||
seq2  CTGCAGAGCACACCCCTCATGTCTCT  326