BAC Information

Click to search

BAC

Clone NameB6Ng01-143L03
Chromosome7 (Build37)
Map Location 63,072,349 - 63,073,489
singlet/doubletsinglet
Overlap geneTubgcp5
Upstream geneLuzp2, LOC668796, Siglech
Downstream geneCyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L03.bB6Ng01-143L03.g
ACCDH941564DH941565
length1,2201,133
definitionDH941564|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L03, 5' end.DH941565|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttttttctaatctctccccaggtattcttacctga
cctaaactttttctcgggttcaagacccgtggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagattgccctgaatttcatccagaactttcagccctatcttaat
cacctgataacatgtgaaaaggaacaaaagggctcctaacactagaaaaa
atttaaggccaaacattttccactttacttctgatagactgtcttgaatt
tccttagaaagttcaaggccaggcgtacctcgtaaagctgtattcactgg
tactcttgttccccagctgaaaagttctgaattcatgtagttgaatcctt
cttaacagtctgctttacgggaacctttattaccgcgacccgcagttctg
gttctggaatgagggatcttccttgcgccggtcccgagttttcttgtatt
ttttcgtcccggattttttctcgtcccgggtttcggcaccaattcttact
agcgttctcacgcccggccaggaagaacacaacagaccaaaatcttctac
ggcaaaactttattgcttacatcttcaggagctaggagcacaaaaccccc
agccccaaaagcgaaagccccttctataatgaaaccgaaaccccttccct
atttaggagagttatatttcgcctaggacgcatcactccctgattggctg
cagcccatggccgagctgacgttcacgggaaaggcagagtacaagtagtc
gtaaaatacccttggcacatgcgcagattatttgtttacacttagacaca
gatgtcagcgccatctgtgacgcaaatgtggggggcggctccaacactca
acttgcataaagtctactacatatcaaatatgggaatacagatgagtgag
catcatgtcagttcatctacttctgaaaataaagatctgcatgtagaact
ttgtggttgtagtaattctcgttaaagttaaatacacctcagctggcatg
gagccatgcctaactagactggagcagcagcgattctgaatcaggacgac
tcgggactccaaatggaggt
gaattctgtgaggaacttaactccagtggaataaaccattcattaatacc
cttcaccgtgtatagcactaatgacggactaattccaacacactgactct
aatgcagcagtgatctagaaaggatgtactgaggaaaaggtttcttcttt
ctgtaatgattgatcatctgaagcgaaaggtaaaaatgggagtctaggtt
ttgctttattagaattgtgtctcataaaaatgaagactcactcccatttt
aatattgaaggttgtatttggagcagagcgactttcacgagaagtttgct
ggtggtgacatatgcgtggatagatcatcagagtctgtgacctgccagac
ttttgaattaacactgaggtcttgcctctatcctcacattgataagcagt
atctacattgctgtgggaatctcatgcaaaccttaaagagagatttcagg
taaattaataaataaacaaataagaagaaagaaaagggcaagttaactct
ggaagtaataagttgttaataaccagtggattcttttcccctccttttcc
ttttttttttctttcattcttttttgattgtgtctattctgtaagacaat
ttttgatgtctatattccaagcaaactttaattagaaaatggatacgtat
ttgttgacaatcttcttttgaaaagaagaatagccaggcagtggtggcgc
acacctttcatcctagcacttgggaggagaggcaggtggatttctgagtt
caagaacagccagggctgcacagagaaaccctgtcttgaaaacaaacaaa
caaaaaaaaaaagatcagttaatagtcaagatttaagtatattgtgactt
taattatttgaagatctgtgtcaaagagttaccaaagaaagaaacgctca
gaacatgcacagtgtgctctcagagaacaatataaggtacttgataatag
ataaccagttccaactccgactgatttgtatccacacataggctctgtaa
agtagtaaagttaagagtgctagtttgctttcgatgctatgataaactct
gaccagaagcagcttgaaagaaagatatatttttgcttacagcctcacat
ttccatccttgatgaaatgaaaggagaacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63072349_63073489
seq2: B6Ng01-143L03.g_67_1199

seq1  GAATTCTGTGAGGAACTTAACTCCAGTGGAATAAACCATTCATTAATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGGAACTTAACTCCAGTGGAATAAACCATTCATTAATACC  50

seq1  CTTCACCGTGTATAGCACTAATGACGGACTAATTCCAACACACTGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCGTGTATAGCACTAATGACGGACTAATTCCAACACACTGACTCT  100

seq1  AATGCAGCAGTGATCTAGAAAGGATGTACTGAGGAAAAGGTTTCTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCAGTGATCTAGAAAGGATGTACTGAGGAAAAGGTTTCTTCTTT  150

seq1  CTGTAATGATTGATCATCTGAAGCGAAAGGTAAAAATGGGAGTCTAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGATTGATCATCTGAAGCGAAAGGTAAAAATGGGAGTCTAGGTT  200

seq1  TTGCTTTATTAGAATTGTGTCTCATAAAAATGAAGACTCACTCCCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATTAGAATTGTGTCTCATAAAAATGAAGACTCACTCCCATTTT  250

seq1  AATATTGAAGGTTGTATTTGGAGCAGAGCGACTTTCACGAGAAGTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAAGGTTGTATTTGGAGCAGAGCGACTTTCACGAGAAGTTTGCT  300

seq1  GGTGGTGACATATGCGTGGATAGATCATCAGAGTCTGTGACCTGCCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACATATGCGTGGATAGATCATCAGAGTCTGTGACCTGCCAGAC  350

seq1  TTTTGAATTAACACTGAGGTCTTGCCTCTATCCTCACATTGATAAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTAACACTGAGGTCTTGCCTCTATCCTCACATTGATAAGCAGT  400

seq1  ATCTACATTGCTGTGGGAATCTCATGCAAACCTTAAAGAGAGATTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATTGCTGTGGGAATCTCATGCAAACCTTAAAGAGAGATTTCAGG  450

seq1  TAAATTAATAAATAAACAAATAAGAAGAAAGAAAAGGGCAAGTTAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATAAATAAACAAATAAGAAGAAAGAAAAGGGCAAGTTAACTCT  500

seq1  GGAAGTAATAAGTTGTTAATAACCAGTGGATTCTTTTCCCCTCCTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAATAAGTTGTTAATAACCAGTGGATTCTTTTCCCCTCCTTTTCC  550

seq1  TTTTTTTTTTCTTTCATTCTTTTTTGATTGTGTCTATTCTGTAAGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTTCATTCTTTTTTGATTGTGTCTATTCTGTAAGACAAT  600

seq1  TTTTGATGTCTATATTCCAAGCAAACTTTAATTAGAAAATGGATACGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGTCTATATTCCAAGCAAACTTTAATTAGAAAATGGATACGTAT  650

seq1  TTGTTGACAATCTTCTTTTGAAAAGAAGAATAGCCAGGCAGTGGTGGCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACAATCTTCTTTTGAAAAGAAGAATAGCCAGGCAGTGGTGGCGC  700

seq1  ACACCTTTCATCCTAGCACTTGGGAGGAGAGGCAGGTGGATTTCTGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTCATCCTAGCACTTGGGAGGAGAGGCAGGTGGATTTCTGAGTT  750

seq1  CAAGAACAGCCAGGGCTGCACAGAGAAACCCTGTCTTGAAAAACAAACAA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAGAACAGCCAGGGCTGCACAGAGAAACCCTGTCTTG-AAAACAAACAA  799

seq1  ACAAAAAAAAAAAGATCAGTTAATAGTCAAGATTTAAGTATATTGTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAAAGATCAGTTAATAGTCAAGATTTAAGTATATTGTGACT  849

seq1  TTAATTATTTGAAGATCTGTGTCAAAAGAGTTACCAAAAGAAAGAAACGC  900
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TTAATTATTTGAAGATCTGTGTC-AAAGAGTTACC-AAAGAAAGAAACGC  897

seq1  TCAGAACATGCACAGTGTGCTCTCAGAAGAACAATATAAGGTACTTGATA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGAACATGCACAGTGTGCTCTCAG-AGAACAATATAAGGTACTTGATA  946

seq1  ATAGATAACCAGTTCCAACTCCGACTGATTTGTATCCACACATAGGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAACCAGTTCCAACTCCGACTGATTTGTATCCACACATAGGCTCT  996

seq1  GTAAAGTTGGTAGAGTTAAGAGTGCTAGTTTGCTTTCGATTGCTATGATA  1050
      |||||| | ||| |||||||||||||||||||||||||| ||||||||| 
seq2  GTAAAG-TAGTAAAGTTAAGAGTGCTAGTTTGCTTTCGA-TGCTATGAT-  1043

seq1  AAACACTGACCAGAAGCAGCTTGGAAAGAAAGGATATA-TTTTGCTTACA  1099
      |||| ||||||||||||||||| |||||||| |||||| |||||||||||
seq2  AAACTCTGACCAGAAGCAGCTT-GAAAGAAA-GATATATTTTTGCTTACA  1091

seq1  G-CTCACATTT-CATCCTTGATGGAAATGAAAGGAGGAACCTGG  1141
      | ||||||||| |||||||||| |||||||||||| ||||||||
seq2  GCCTCACATTTCCATCCTTGAT-GAAATGAAAGGA-GAACCTGG  1133