BAC Information

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BAC

Clone NameB6Ng01-143M08
Chromosome7 (Build37)
Map Location 7,245,195 - 7,365,445
singlet/doubletdoublet
Overlap geneClcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Upstream geneZfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik
Downstream geneVmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143M08.bB6Ng01-143M08.g
ACCDH941621DH941622
length1,1281,124
definitionDH941621|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M08, 5' end.DH941622|Mus musculus domesticus DNA, BAC clone: B6Ng01-143M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,364,307 - 7,365,445)(7,245,195 - 7,246,349)
sequence
gaattctcaactgaggaatactgaatggccgagaagcacctaaagaaatg
ttcaacatccttaatgatcactgaaatgcaaatcaaaacaaccctgagat
tccatttcacaccagtcagaatggctgagaacaaaaattcaggtgatagc
agatgctgggtggatgtggtaaaagaggaacactcctccattgctgacgg
gatggcgagctggtaaaaccactctggaaatcaatctggtgttttatcag
caaattggcaaatatagaactaatggaagatccaccaatacctctcctgt
tcatatacccagaagatgttccaatttgtaataggatatatgctccacta
tgttcatagaaacattatttataatagctgtgtagccctggctgtcctga
aactcactctgtagtccaggctgaccttgaactccttcatatgtctgcta
tatgtaccaatgccacagggcagcaaacaccatctttatgagcgtaaaat
taataaataaaatgggactgtaagactggatcactatcagggacatcagc
cctctgcctgggcttagaatccaaatcccagagttgcaaatatcaggtaa
actaaggatcctctgccaacccatacagcatctccaggccctcagacagg
gctgtccagagaggcacatgaatatgggtgattctacccaaggtttagaa
gagttataccgtggtggtgcaaatttcagacctgtctaggctccaggtga
atgaatgcctttctctctctctttccctctctctctctctctcctttctt
tctttcctttgattcagcctttctctgtgtagccttggctgcactagatg
gtagaccaagctagccacaaactcagatatccactgggattatatgtatg
cactaacacctcctgccactcttcctgcctttatgcacacagtggttctg
gttaatgtagttcaaacagcttcaccatggatacaggacagttgcagaga
tggacagtggagaccatgtgtaggagttaagcgactccctacagactaga
atcattaatatggctcagtgttccttccccccaccccacccctcagagct
gcgcttggagacttccttctgaagtaca
tacaagtcaagtctgacccagaaaatatatctgtatggcagcagaatttt
tatgttcatgaatgtttagattaacaaatttaactacttataacctgaaa
tattcattcaaaaagtagcattttcgtgacacataagaactaaataaagg
tgaaatttcaaagcccataaagaaagttttcagccatatagccatgtcta
cacatggagattgctgcaagtctagtcaaaaggctatggcaaaatgtatg
gctaatgaaacctacatagttatctatcctgatcttttcagagaaaaaaa
aagcccaacccctgaaatgatcccttaattttcaaaactaagttggaagc
taaatggtttgtgatcccacactagaaagatctccaaaaactttatattg
gcaatttcgaaaatagtacatgagagcacatttaacagcagaaacccttt
tccctaattgactccaagaagcgtattcaatacttctatgctgtcagcca
tccacgtatttctcgctactccaaaccctgaaagcccattttggtccctc
tcacctcctctagactgaagagcacacctcctatcggagcaccaaaggcc
acagagacaccagcagcagctgcagctgaaagcacctgcaaatggagaca
ttaaaagtgagataagtggatattagcccagaaacttagaatacccaaga
tacaagatgcaatctgcaaaacacatgaaactcaagaaaaacgaagacca
aaatgtgggacactttgccccttcttagaattggaacaaaacacccatgg
aaaggagttacaaagtttggagctgagacaaaggatggaccatctagaga
ctgccatacccggggatccatcccataatcagcctccaaacactgacaca
ttgcatacactagcaagatttgctgaaagaccacatatagctgtccctgt
gagactatgccgggctagcaaacacagaatgatgctcacagtcagctatt
gatgaatcacattgccccatgagagctagagaaagtacccaagagctaag
atctgcatctaaagtgaacacaaatgactaacgttcccgagcctctgact
tagctgcatatgtattcaaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7364307_7365445
seq2: B6Ng01-143M08.b_45_1172 (reverse)

seq1  TGTACTTCAGAAGGAAAGTCTCCAGCAGCAGCTTCTAGAGGGGTGGGGTG  50
      |||||||||||||| |||||||||   ||||| ||| |||||||||||||
seq2  TGTACTTCAGAAGG-AAGTCTCCAAGCGCAGC-TCT-GAGGGGTGGGGTG  47

seq1  GGGGGAAGGGAACACTGAGCATATGTAAATGGATCTAGTCTGTAGGGAGT  100
      ||||||| ||||||||||||  || | ||||  |||||||||||||||||
seq2  GGGGGAA-GGAACACTGAGC-CATATTAATGATTCTAGTCTGTAGGGAGT  95

seq1  CCGCTTAACTCCTTACACATTGGTTCTCCACTGTCCATCTCTGCAACTGT  150
       ||||||||||| |||||||  | ||||||||||||||||||||||||||
seq2  -CGCTTAACTCC-TACACAT--GGTCTCCACTGTCCATCTCTGCAACTGT  141

seq1  CCTGGTATCCATGGTGAAGCTGTTTGAACTACATTAACCAGAACCCACTG  200
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCT-GTATCCATGGTGAAGCTGTTTGAACTACATTAACCAGAA-CCACTG  189

seq1  TGTGCATAAAGGCAGGAAGAGTGGCAGGAGGTGTTAGTGCATACATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAAAGGCAGGAAGAGTGGCAGGAGGTGTTAGTGCATACATATAA  239

seq1  TCCCAGTGGATATCTGAGTTTGTGGCTAGCTTGGTCTACCATCTAGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGGATATCTGAGTTTGTGGCTAGCTTGGTCTACCATCTAGTGCA  289

seq1  GCCAAGGCTACACAGAGAAAGGCTGAATCAAAGGAAAGAAAGAAAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCTACACAGAGAAAGGCTGAATCAAAGGAAAGAAAGAAAGGAGA  339

seq1  GAGAGAGAGAGAGGGAAAGAGAGAGAGAAAGGCATTCATTCACCTGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGGGAAAGAGAGAGAGAAAGGCATTCATTCACCTGGAGC  389

seq1  CTAGACAGGTCTGAAATTTGCACCACCACGGTATAACTCTTCTAAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGTCTGAAATTTGCACCACCACGGTATAACTCTTCTAAACCTT  439

seq1  GGGTAGAATCACCCATATTCATGTGCCTCTCTGGACAGCCCTGTCTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAATCACCCATATTCATGTGCCTCTCTGGACAGCCCTGTCTGAGG  489

seq1  GCCTGGAGATGCTGTATGGGTTGGCAGAGGATCCTTAGTTTACCTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGATGCTGTATGGGTTGGCAGAGGATCCTTAGTTTACCTGATAT  539

seq1  TTGCAACTCTGGGATTTGGATTCTAAGCCCAGGCAGAGGGCTGATGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTCTGGGATTTGGATTCTAAGCCCAGGCAGAGGGCTGATGTCCC  589

seq1  TGATAGTGATCCAGTCTTACAGTCCCATTTTATTTATTAATTTTACGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGATCCAGTCTTACAGTCCCATTTTATTTATTAATTTTACGCTC  639

seq1  ATAAAGATGGTGTTTGCTGCCCTGTGGCATTGGTACATATAGCAGACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGGTGTTTGCTGCCCTGTGGCATTGGTACATATAGCAGACATA  689

seq1  TGAAGGAGTTCAAGGTCAGCCTGGACTACAGAGTGAGTTTCAGGACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGTTCAAGGTCAGCCTGGACTACAGAGTGAGTTTCAGGACAGCC  739

seq1  AGGGCTACACAGCTATTATAAATAATGTTTCTATGAACATAGTGGAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGCTATTATAAATAATGTTTCTATGAACATAGTGGAGCAT  789

seq1  ATATCCTATTACAAATTGGAACATCTTCTGGGTATATGAACAGGAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTATTACAAATTGGAACATCTTCTGGGTATATGAACAGGAGAGGT  839

seq1  ATTGGTGGATCTTCCATTAGTTCTATATTTGCCAATTTGCTGATAAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGGATCTTCCATTAGTTCTATATTTGCCAATTTGCTGATAAAACA  889

seq1  CCAGATTGATTTCCAGAGTGGTTTTACCAGCTCGCCATCCCGTCAGCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGATTTCCAGAGTGGTTTTACCAGCTCGCCATCCCGTCAGCAAT  939

seq1  GGAGGAGTGTTCCTCTTTTACCACATCCACCCAGCATCTGCTATCACCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGTTCCTCTTTTACCACATCCACCCAGCATCTGCTATCACCTG  989

seq1  AATTTTTGTTCTCAGCCATTCTGACTGGTGTGAAATGGAATCTCAGGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTTCTCAGCCATTCTGACTGGTGTGAAATGGAATCTCAGGGTT  1039

seq1  GTTTTGATTTGCATTTCAGTGATCATTAAGGATGTTGAACATTTCTTTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTTGCATTTCAGTGATCATTAAGGATGTTGAACATTTCTTTAG  1089

seq1  GTGCTTCTCGGCCATTCAGTATTCCTCAGTTGAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCGGCCATTCAGTATTCCTCAGTTGAGAATTC  1128

seq1: chr7_7245195_7246349
seq2: B6Ng01-143M08.g_81_1204

seq1  TACAAGTCAAGTCTGACCCAGAAAATATATCTGTATGGCAGCAGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTCAAGTCTGACCCAGAAAATATATCTGTATGGCAGCAGAATTTT  50

seq1  TATGTTCATGAATGTTTAGATTAACAAATTTAACTACTTATAACCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATGAATGTTTAGATTAACAAATTTAACTACTTATAACCTGAAA  100

seq1  TATTCATTCAAAAAGTAGCATTTTCGTGACACATAAGAACTAAATAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCAAAAAGTAGCATTTTCGTGACACATAAGAACTAAATAAAGG  150

seq1  TGAAATTTCAAAGCCCATAAAGAAAGTTTTCAGCCATATAGCCATGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCAAAGCCCATAAAGAAAGTTTTCAGCCATATAGCCATGTCTA  200

seq1  CACATGGAGATTGCTGCAAGTCTAGTCAAAAGGCTATGGCAAAATGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGATTGCTGCAAGTCTAGTCAAAAGGCTATGGCAAAATGTATG  250

seq1  GCTAATGAAACCTACATAGTTATCTATCCTGATCTTTTCAGAGAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAAACCTACATAGTTATCTATCCTGATCTTTTCAGAGAAAAAAA  300

seq1  AAGCCCAACCCCTGAAATGATCCCTTAATTTTCAAAACTAAGTTGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAACCCCTGAAATGATCCCTTAATTTTCAAAACTAAGTTGGAAGC  350

seq1  TAAATGGTTTGTGATCCCACACTAGAAAGATCTCCAAAAACTTTATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTTTGTGATCCCACACTAGAAAGATCTCCAAAAACTTTATATTG  400

seq1  GCAATTTCGAAAATAGTACATGAGAGCACATTTAACAGCAGAAACCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCGAAAATAGTACATGAGAGCACATTTAACAGCAGAAACCCTTT  450

seq1  TCCCTAATTGACTCCAAGAAGCGTATTCAATACTTCTATGCTGTCAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATTGACTCCAAGAAGCGTATTCAATACTTCTATGCTGTCAGCCA  500

seq1  TCCACGTATTTCTCGCTACTCCAAACCCTGAAAGCCCATTTTGGTCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTATTTCTCGCTACTCCAAACCCTGAAAGCCCATTTTGGTCCCTC  550

seq1  TCACCTCCTCTAGACTGAAGAGCACACCTCCTATCGGAGCACCAAAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCCTCTAGACTGAAGAGCACACCTCCTATCGGAGCACCAAAGGCC  600

seq1  ACAGAGACACCAGCAGCAGCTGCAGCTGAAAGCACCTGCAAATGGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACCAGCAGCAGCTGCAGCTGAAAGCACCTGCAAATGGAGACA  650

seq1  TTAAAAGTGAGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGAGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGA  700

seq1  TACAAGATGCAATCTGCAAAACACATGAAACTCAAGAAAAACGAAGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATGCAATCTGCAAAACACATGAAACTCAAGAAAAACGAAGACCA  750

seq1  AAATGTGGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATG  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATGTGGGACACTTTGCCCCTTCTTAGAATT-GGAACAAAACACCCATG  799

seq1  G-AAGGAGTTACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGA  849
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAAGGAGTTACAAAGTTTGGAGCTGAGAC-AAAGGATGGACCATCTAGA  848

seq1  GACTGCCATACCCGGGGATCCATCCCATAATCAGCCTCCAAACACTGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATACCCGGGGATCCATCCCATAATCAGCCTCCAAACACTGACA  898

seq1  CCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCACATATAGCTGT  949
       |||||||||||||||||||| |||||||||||   ||||||||||||||
seq2  -CATTGCATACACTAGCAAGA-TTTGCTGAAAG--ACCACATATAGCTGT  944

seq1  CCCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCAC  999
      ||| |||||||||||||||||  |||||||||||||||   |||||||||
seq2  CCC-TGTGAGACTATGCCGGG--CTAGCAAACACAGAA--TGATGCTCAC  989

seq1  AGTCAGCTATTGGATGGATCACATGGCCCCCAATGGAGGAGCTAGAGAAA  1049
      ||||||||||| |||| ||||||| |||||  |||   ||||||||||||
seq2  AGTCAGCTATT-GATGAATCACATTGCCCC--ATG--AGAGCTAGAGAAA  1034

seq1  GTACCCAAGGAGCTAAAGGGGTCTGCAATCCTATAGGTGGAACAACAATA  1099
      |||||||| |||||||   | ||||||   ||| ||   |||| |||| |
seq2  GTACCCAA-GAGCTAA---GATCTGCA--TCTAAAG--TGAAC-ACAA-A  1074

seq1  TGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAA  1149
      || ||||||  || |||  ||||   ||||| |||||||||||||||  |
seq2  TG-ACTAAC--GTTCCC--GAGCCTCTGACT-TAGCTGCATATGTATTCA  1118

seq1  AAGATG  1155
      ||||||
seq2  AAGATG  1124