BAC Information

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BAC

Clone NameB6Ng01-144C08
Chromosome7 (Build37)
Map Location 52,924,641 - 53,070,557
singlet/doubletdoublet
Overlap geneSec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2
Upstream gene1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2
Downstream geneKcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144C08.bB6Ng01-144C08.g
ACCDH941898DH941899
length1,135568
definitionDH941898|Mus musculus domesticus DNA, BAC clone: B6Ng01-144C08, 5' end.DH941899|Mus musculus domesticus DNA, BAC clone: B6Ng01-144C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,924,641 - 52,925,298)(53,069,984 - 53,070,557)
sequence
gaattcctagcaagttcctacagctaggaatacacaaagaaaccctatct
caaaaaaataaaaagaaatgaaacaaaattaattaattaacaccaaactc
aaagcaaaaaatcaaaaacaaaacaaaaacaaaaacaaaactcccaggaa
caaatgcaataatatataagtataaaattattttagacggtaacctaaac
aattaattttaaaaaatttctggagggcctgaaaagatggctcgggggat
taagaacatgaccacagttcagtaaccagcttttacattgggctgctcac
aactggaactcaggatacagaggatctggtgccctctgctggtcttcaca
ggcacctgcactcatgtgtacataacatacacacaaacatatgtacgtgt
aatttaaaataataaaaatagggattggagagcaatacgtgcacttacgg
ctcttatggaggaccagggttcagttccgagcaccgacttcaggtggttc
acaccgctccgtagctccagcttcaggggaatccaactcctcacccctct
atgtgtgtgcgctcaggtgcacatagccacagcaggcacatagttaaaaa
tcataaaaattaatgttttgaaagtatggcctggggagatagctcagttg
gtaaagcattcactgcacagacatgcaggtctgagttcagtcctcagcac
ccacacaaaggccaggcatggcagtgtgtgcctgcagtcctagtgcgggg
gatacagaatcagagagatgcttgggcctcaatggccagctgtgtagcct
aactggcttctgagggcctgccccagctggaatgggtgggagtgaaacac
agcatccgatgcaggccaaaagactgatgatctctggccctgcaactgtc
tctagttgtgtaggatgctagtatgtgattggctcatggagacacaacac
tctcttgctgctttctgtggctgaaaactgctacttttaaattttacctt
tctgtgctttattttactttataatctctgtgctttctagatgctgaaaa
cgtactcttatgacttcactctttatgtttatttactttatgatctctgt
attattcaagctgatcttattttaaacattactgt
caggacagagaaaccctgtctcgaaaagaaaaaaaaaaggggggggggca
ggagtgtgggaactgaaaaggttgggtggaaggaggactttaagcacagg
gtcttggagagttgacagagtgccaggcagaagattctgaggaaaaaggg
gtgtcttgggagaatgcctggggaaggcaggattttaggaagaggaagct
aagagggagagtttaggaggaagagtcaccgcgcattcacggtacccaat
accataacatttggaagaaagaatgcttttatttaccatcctttgattct
gaggagatttgaggtatgtaggaaagtctcatgtagaggtatgaaaaggg
ttcagagatagcgacctgcagagaattaccctgagaaaggaggcaaaaag
accgacctgtgtggctcgcagttgcttggcaaccactgcggtcaaaagct
agcgtggagggccaggaggtgtggctcgagctgcaacccaaggttgagac
cccgcccttgacaacaaaactaacaaagcaccgccccctaacaacgaatg
cctgttgggggggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52924641_52925298
seq2: B6Ng01-144C08.b_539_1178

seq1  GGTTCACACCGCTCCGTAGCTCCAGCTTCAGGGGAATCCAACTCCTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACACCGCTCCGTAGCTCCAGCTTCAGGGGAATCCAACTCCTCACC  50

seq1  CCTCTATGTGTGTGCGCTCAGGTGCACATAGCCACAGCAGGCACATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGTGTGTGCGCTCAGGTGCACATAGCCACAGCAGGCACATAGTT  100

seq1  AAAAATCATAAAAATTAATGTTTTGAAAGTATGGCCTGGGGAGATAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATAAAAATTAATGTTTTGAAAGTATGGCCTGGGGAGATAGCTC  150

seq1  AGTTGGTAAAGCATTCACTGCACAGACATGCAGGTCTGAGTTCAGTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAAAGCATTCACTGCACAGACATGCAGGTCTGAGTTCAGTCCTC  200

seq1  AGCACCCACACAAAGGCCAGGCATGGCAGTGTGTGCCTGCAGTCCTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCACACAAAGGCCAGGCATGGCAGTGTGTGCCTGCAGTCCTAGTG  250

seq1  CGGGGGATACAGAATCAGAGAGATGCTTGGGCCTCAATGGCCAGCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGATACAGAATCAGAGAGATGCTTGGGCCTCAATGGCCAGCTGTGT  300

seq1  AGCCTAACTGGCTTCTGAGGGCCTGCCCCAGCTGGAATGGGTGGGAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACTGGCTTCTGAGGGCCTGCCCCAGCTGGAATGGGTGGGAGTGA  350

seq1  AACACAGCATCCGATGCAGGCCAAAAGACTGATGATCTCTGGCCCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCATCCGATGCAGGCCAAAAGACTGATGATCTCTGGCCCTGCAA  400

seq1  CTGTCTCTAGTTGTGTAGGATGCTAGTATGTGA-TGGCTCATGGAGACAC  449
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTCTCTAGTTGTGTAGGATGCTAGTATGTGATTGGCTCATGGAGACAC  450

seq1  AACACTCTCTTGCTGC-TTCTGTGGCTGAAAACTGCTAACTTTTTAAATT  498
      |||||||||||||||| |||||||||||||||||||| ||||||  || |
seq2  AACACTCTCTTGCTGCTTTCTGTGGCTGAAAACTGCT-ACTTTT--AAAT  497

seq1  TTTACCTTTCTGTGCTTTATTTTTACTTTATAAATCTCTGTGCTTTCTTA  548
      ||||||||||||||||||| ||||||||||| ||||||||||||||| ||
seq2  TTTACCTTTCTGTGCTTTA-TTTTACTTTAT-AATCTCTGTGCTTTC-TA  544

seq1  GATGCTGAAAACGTAACTCTTTATTAACTCCAACTCTTTATGTTTTATTT  598
      |||||||||||||| ||||||   | ||| | |||||||||||||   ||
seq2  GATGCTGAAAACGT-ACTCTT--ATGACTTC-ACTCTTTATGTTT--ATT  588

seq1  TACTTTATGAATCTCTGTAATTTATTCAATGCTGTATCTTTATTTTATAA  648
      ||||||||| |||||||||  |||||||| |||| ||| |||||||| ||
seq2  TACTTTATG-ATCTCTGTA--TTATTCAA-GCTG-ATC-TTATTTTA-AA  631

seq1  CTATTACTGT  658
      | ||||||||
seq2  C-ATTACTGT  640

seq1: chr7_53069984_53070557
seq2: B6Ng01-144C08.g_68_641 (reverse)

seq1  CCACCCCCCCCCAACAGGCATTCGTTGTTAGGGGGCGGTGCTTTGTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCCCCAACAGGCATTCGTTGTTAGGGGGCGGTGCTTTGTTAGT  50

seq1  TTTGTTGTCAAGGGCGGGGTCTCAACCTTGGGTTGCAGCTCGAGCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTCAAGGGCGGGGTCTCAACCTTGGGTTGCAGCTCGAGCCACAC  100

seq1  CTCCTGGCCCTCCACGCTAGCTTTTGACCGCAGTGGTTGCCAAGCAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCCTCCACGCTAGCTTTTGACCGCAGTGGTTGCCAAGCAACTG  150

seq1  CGAGCCACACAGGTCGGTCTTTTTGCCTCCTTTCTCAGGGTAATTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCACACAGGTCGGTCTTTTTGCCTCCTTTCTCAGGGTAATTCTCTG  200

seq1  CAGGTCGCTATCTCTGAACCCTTTTCATACCTCTACATGAGACTTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCGCTATCTCTGAACCCTTTTCATACCTCTACATGAGACTTTCCTA  250

seq1  CATACCTCAAATCTCCTCAGAATCAAAGGATGGTAAATAAAAGCATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCAAATCTCCTCAGAATCAAAGGATGGTAAATAAAAGCATTCTT  300

seq1  TCTTCCAAATGTTATGGTATTGGGTACCGTGAATGCGCGGTGACTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAAATGTTATGGTATTGGGTACCGTGAATGCGCGGTGACTCTTCC  350

seq1  TCCTAAACTCTCCCTCTTAGCTTCCTCTTCCTAAAATCCTGCCTTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACTCTCCCTCTTAGCTTCCTCTTCCTAAAATCCTGCCTTCCCCA  400

seq1  GGCATTCTCCCAAGACACCCCTTTTTCCTCAGAATCTTCTGCCTGGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTCCCAAGACACCCCTTTTTCCTCAGAATCTTCTGCCTGGCACT  450

seq1  CTGTCAACTCTCCAAGACCCTGTGCTTAAAGTCCTCCTTCCACCCAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACTCTCCAAGACCCTGTGCTTAAAGTCCTCCTTCCACCCAACCT  500

seq1  TTTCAGTTCCCACACTCCTGCCCCCCCCCCTTTTTTTTTTCTTTTCGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCCCACACTCCTGCCCCCCCCCCTTTTTTTTTTCTTTTCGAGA  550

seq1  CAGGGTTTCTCTGTCCTGGAATTC  574
      ||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTCCTGGAATTC  574