BAC Information

Click to search

BAC

Clone NameB6Ng01-144D01
Chromosome7 (Build37)
Map Location 90,973,796 - 91,082,526
singlet/doubletdoublet
Overlap geneMesdc1, Mesdc2
Upstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
Downstream gene9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144D01.bB6Ng01-144D01.g
ACCDH941932DH941933
length5041,010
definitionDH941932|Mus musculus domesticus DNA, BAC clone: B6Ng01-144D01, 5' end.DH941933|Mus musculus domesticus DNA, BAC clone: B6Ng01-144D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,082,017 - 91,082,526)(90,973,796 - 90,974,824)
sequence
ttttggtgccaccttattccacagtggtgctggtatgcccaatgggtagc
atcaggatatgccaatgtgcttctgctgggccaattggctccttgtgggg
atctgagagtggttggctccagaccaggatctttcagcttatgttcactc
tgagcaaatagctccgatgcccagacgagtgaaaactatccatgtccaat
attcttcggagacatcagggtttctctgtgtttcatgaatgagattggtc
ccctttcctccacaaccacaacctttctttttcaaagaagatttgcttcg
gtcccctttgtccagtggtattaaggagccttagtcccagagtctactct
ccaggttgagccaactcgcagggggtctttcctactaatggatcttgcag
ctgctgggatgtgtctgtgggaccatgcctcttaagacatagtggctcca
gttgcgagtgtcagagaaaagacctcttctggggagatgagtgggagggg
gagg
gaattccaatctgagaaatcctgccattgacagtctctttccagccctcc
aatgctgtccctcagagtcctctcctgctttcctccctgggccttcctac
cttttctggtagactaaattcaaacctccatgccctgtctcttcagctag
tcacacccctcactgagctctgcagcttctcttgactggatttccttcca
cacatcctggagctcagcacccagctcactgtctccctgagagaagacag
tgctcatggaacccctggctatcccagctcctgcaccctcatcctgcacc
ctcatcttgcactctcatcctgcactctcatcctgcaccctcatcctgca
ccctcatcctgcaccctcatcctgcaccctcatcctgcaccctcatcctg
cactctcatcctgcactctcatcctgcaccctcatcctgcaccctcatcc
tgcaccctcatcttgcaccctcatcctgcactctcatcctgcaccctcat
cctgcactctcatcctgcaccctcatcctgcaccctcatcctgcaccctc
atcctgcaccctcatcctgcaccctcatcctgcaccctcatcctgcaccc
tcatcctgcaccctcatcctgcactctcatcctgcaccctcatcctgcac
cctcatcctgcactctcatcctgcactctcatcctgcactctcatcctgc
actctcatcctgcaccctcatcctgcactctcatcctgcaccctcatcct
gcaccctcatcctgcaccctcatcctgcaccctcatcctgcaccctcatc
ctgcaccctcatcctgcactctcatcctgcacctcatcctgcactctcat
ctgcactctcatcctgcactctcatctgcactctcatctgcactctcatc
tgcactctcatctgcactctcatctgcactctcatctgcactctcatctg
cacctcatctgcactctcatctaacctcatcctggacctcatctgacttc
atcctgactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_91082017_91082526
seq2: B6Ng01-144D01.b_46_555 (reverse)

seq1  CCTCCCCCTCCCACTCATCTCCCCAGAAGAGGTCTTTTCTCTGACACTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTCCCACTCATCTCCCCAGAAGAGGTCTTTTCTCTGACACTCG  50

seq1  CAACTGGAGCCACTATGTCTTAAGAGGCATGGTCCCACAGACACATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAGCCACTATGTCTTAAGAGGCATGGTCCCACAGACACATCCCA  100

seq1  GCAGCTGCAAGATCCATTAGTAGGAAAGACCCCCTGCGAGTTGGCTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCAAGATCCATTAGTAGGAAAGACCCCCTGCGAGTTGGCTCAAC  150

seq1  CTGGAGAGTAGACTCTGGGACTAAGGCTCCTTAATACCACTGGACAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGTAGACTCTGGGACTAAGGCTCCTTAATACCACTGGACAAAGG  200

seq1  GGACCGAAGCAAATCTTCTTTGAAAAAGAAAGGTTGTGGTTGTGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGAAGCAAATCTTCTTTGAAAAAGAAAGGTTGTGGTTGTGGAGGAA  250

seq1  AGGGGACCAATCTCATTCATGAAACACAGAGAAACCCTGATGTCTCCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCAATCTCATTCATGAAACACAGAGAAACCCTGATGTCTCCGAA  300

seq1  GAATATTGGACATGGATAGTTTTCACTCGTCTGGGCATCGGAGCTATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGGACATGGATAGTTTTCACTCGTCTGGGCATCGGAGCTATTTG  350

seq1  CTCAGAGTGAACATAAGCTGAAAGATCCTGGTCTGGAGCCAACCACTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTGAACATAAGCTGAAAGATCCTGGTCTGGAGCCAACCACTCTC  400

seq1  AGATCCCCACAAGGAGCCAATTGGCCCAGCAGAAGCACATTGGCATATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCCACAAGGAGCCAATTGGCCCAGCAGAAGCACATTGGCATATCC  450

seq1  TGATGCTACCCATTGGGCATACCAGCACCACTGTGGAATAAGGTGGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTACCCATTGGGCATACCAGCACCACTGTGGAATAAGGTGGCACC  500

seq1  AAAAGAATTC  510
      ||||||||||
seq2  AAAAGAATTC  510

seq1: chr7_90973796_90974824
seq2: B6Ng01-144D01.g_66_1075

seq1  GAATTCCAATCTGAGAAATCCTGCCATTGACAGTCTCTTTCCAGCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTGAGAAATCCTGCCATTGACAGTCTCTTTCCAGCCCTCC  50

seq1  AATGCTGTCCCTCAGAGTCCTCTCCTGCTTTCCTCCCTGGGCCTTCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTCCCTCAGAGTCCTCTCCTGCTTTCCTCCCTGGGCCTTCCTAC  100

seq1  CTTTTCTGGTAGACTAAATTCAAACCTCCATGCCCTGTCTCTTCAGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGTAGACTAAATTCAAACCTCCATGCCCTGTCTCTTCAGCTAG  150

seq1  TCACACCCCTCACTGAGCTCTGCAGCTTCTCTTGACTGGATTTCCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCCTCACTGAGCTCTGCAGCTTCTCTTGACTGGATTTCCTTCCA  200

seq1  CACATCCTGGAGCTCAGCACCCAGCTCACTGTCTCCCTGAGAGAAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTGGAGCTCAGCACCCAGCTCACTGTCTCCCTGAGAGAAGACAG  250

seq1  TGCTCATGGAACCCCTGGCTATCCCAGCTCCTGCACCCTCATCCTGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGAACCCCTGGCTATCCCAGCTCCTGCACCCTCATCCTGCACC  300

seq1  CTCATCTTGCACTCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTGCACTCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCA  350

seq1  CCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTG  400

seq1  CACTCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCACCCTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCACCCTCATCC  450

seq1  TGCACCCTCATCTTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCTCATCTTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCAT  500

seq1  CCTGCACTCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTC  550

seq1  ATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCC  600

seq1  TCATCCTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCAC  650

seq1  CCTCATCCTGCACTCTCATCCTGCACTCTCATCCTGCACTCTCATCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCTGCACTCTCATCCTGCACTCTCATCCTGCACTCTCATCCTGC  700

seq1  ACTCTCATCCTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATCCTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCATCCT  750

seq1  GCACCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCATCCTGCACCCTCATCCTGCACCCTCATCCTGCACCCTCATC  800

seq1  CTGCACCCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCACTCTCA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGCACCCTCATCCTGCACTCTCATCCTGCA-CCTCATCCTGCACTCTCA  849

seq1  TCCTGCACTCTCATCCTGCACTCTCATCCTGCACTCTCATCCTGCACTCT  900
      | ||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  T-CTGCACTCTCATCCTGCACTCTCAT-CTGCACTCTCAT-CTGCACTCT  896

seq1  CATCCTGCACTCTCATCCTGCACTCTCATCCTGCACCCTCATCCTGCACT  950
      ||| |||||||||||| |||||||||||| |||||| ||||| |||||||
seq2  CAT-CTGCACTCTCAT-CTGCACTCTCAT-CTGCACTCTCAT-CTGCACT  942

seq1  CTCATCCTGCACCCTCATCCTGCACTCTCATCCTACACCCTCATCCTGCA  1000
      ||||| ||||| |||||| |||||||||||||    | |||||||||| |
seq2  CTCAT-CTGCA-CCTCAT-CTGCACTCTCATC---TAACCTCATCCTGGA  986

seq1  CCCTCATCCTGCACTCTCATCCTGCACTC  1029
       |||||| ||| ||| |||||||| ||||
seq2  -CCTCAT-CTG-ACT-TCATCCTG-ACTC  1010