BAC Information

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BAC

Clone NameB6Ng01-144F13
Chromosome7 (Build37)11 (Build37)
Map Location 146,895,047 - 146,896,17455,441,741 - 55,441,946
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472
Downstream geneEG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144F13.bB6Ng01-144F13.g
ACCDH942049DH942050
length1,116949
definitionDH942049|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F13, 5' end.DH942050|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,895,047 - 146,896,174)(55,441,741 - 55,441,946)
sequence
gaattcccccacccacataagctcctgtgtttgaatacttagtcaccagt
gagtggaactgtttggcaaggattaggaagtgtgtccttattgaagatgt
gttactcaggagtaggctttgaggtttcaaaaatccatgctaggaccatt
ctttctgtctctctctctctctctgtctctgtctctgtctctgtctctcg
atcttgttctttctatctccccctgcctgctgcctgaaaatcaggagctc
tcagctactgctcctgatcatagactcactctttacactgagcaagccct
caattaaatgctttcctttatatgagttgccctggtcattgtatctctta
gcagcaatagaacagtgaccaagacaactttccccaatagcatggactgt
agcaggaatattaactgcagggggataacacattgttccttttataaagg
tgctaataaaagactcattgacagagtaaccaacccaatgtggctgcagg
tggctatgactgtggtatgatcctcagtttcttttatgactctaagtgtt
gagagtctcagtgtgtcaggggcatctcacagttgtcctcctctgacacc
ctctaatgtcaaacaagatgcaagttatttgtctgtttcattttttttta
aagtaagatcccaagaaagctgttaattttttaatgtttcttctgccagg
gcaggtgtgtgatctctttttgtttattaattaatttcttgttctgatta
gtttactgtgtataggttagaggcaattcaatttgatattttgacattta
gcctggtgggaaattggtgaaggttccctctacatctaattctaaagggt
tggatttatttcagagaatatgctcaggatagtctttcatcaacagaatg
aaatgtgggttgtgtaagctagggacttcatgtttggggcagctgagttg
gctgggcagcaggggcagctggagcagctggggcggctgggagctttggt
tctccatgagctcagagctccatatagtgagctcttaccctgcattgaag
caagcttctctaatgaatgatctggtgtgccaaaatttcaaagtccattt
ctgtcctatggtctaa
gaattccttctttttctgttctttggaaaagttcttgtaaactcatatta
tttccatctttaatggttggatagaatttttttgatgaagccatctggac
acttggactaagacactatttttcttaatgacaaagtttcaaactatgga
gtcatttcttgaatagttataaattgttaaactgtttttatattccctta
ggacacttttgttatattttttcctaggaattattctgtttcactccact
gttcaaacttgctggtgtatggttatgggtagtgtgcattctctttgtct
ctgccccttcttttttatctgtagcatctgtcatgatggcccctgtgact
cctggcatctatagcttgtgtttctttctttcttgatcagatttgccagg
gttattttaattaattaactaattaattatttttttccaagacagagtct
ttagtagccctggttatcctggaactcattatgtagatcagttggccaca
aactcacagagatctgcctgcctctgtctcctgaatgctgggattaaagt
tgtgtgccaaaacatctagccttattaatacttttaaacatatttttgta
acacatatttatatatgttatatgtaagtacatatacttatatttcattt
tctattttatactcttctttattatttaatttctcctaattttggttaat
tattatttttagaagttctttaaaaattaaaaaaataattttattttcaa
ttatgtgtatgtgtgttcctggttgtgaaccatgtgttcacaggtgccta
atggaagacagggacatgtgtcagagcccctggacacaagtataacttta
tcatgcatttctgtatctccatttcagccattccttgtctattactggtt
gcctaatgcatttaaaggcatatttattttattttatgtgtatgagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_146895047_146896174
seq2: B6Ng01-144F13.b_52_1167

seq1  GAATTCCCCCACCCACATAAGCTCCTGTGTTTGAATACTTAGTCACCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCACCCACATAAGCTCCTGTGTTTGAATACTTAGTCACCAGT  50

seq1  GAGTGGAACTGTTTGGCAAGGATTAGGAAGTGTGTCCTTATTGAAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAACTGTTTGGCAAGGATTAGGAAGTGTGTCCTTATTGAAGATGT  100

seq1  GTTACTCAGGAGTAGGCTTTGAGGTTTCAAAAATCCATGCTAGGACCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCAGGAGTAGGCTTTGAGGTTTCAAAAATCCATGCTAGGACCATT  150

seq1  CTTTCTGTCTCTCTCTCTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCTCTCTCTCTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCG  200

seq1  ATCTTGTTCTTTCTATCTCCCCCTGCCTGCTGCCTGAAAATCAGGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTCTTTCTATCTCCCCCTGCCTGCTGCCTGAAAATCAGGAGCTC  250

seq1  TCAGCTACTGCTCCTGATCATAGACTCACTCTTTACACTGAGCAAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACTGCTCCTGATCATAGACTCACTCTTTACACTGAGCAAGCCCT  300

seq1  CAATTAAATGCTTTCCTTTATATGAGTTGCCCTGGTCATTGTATCTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATGCTTTCCTTTATATGAGTTGCCCTGGTCATTGTATCTCTTA  350

seq1  GCAGCAATAGAACAGTGACCAAGACAACTTTCCCCAATAGCATGGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATAGAACAGTGACCAAGACAACTTTCCCCAATAGCATGGACTGT  400

seq1  AGCAGGAATATTAACTGCAGGGGGATAACACATTGTTCCTTTTATAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAATATTAACTGCAGGGGGATAACACATTGTTCCTTTTATAAAGG  450

seq1  TGCTAATAAAAGACTCATTGACAGAGTAACCAACCCAATGTGGCTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATAAAAGACTCATTGACAGAGTAACCAACCCAATGTGGCTGCAGG  500

seq1  TGGCTATGACTGTGGTATGATCCTCAGTTTCTTTTATGACTCTAAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGACTGTGGTATGATCCTCAGTTTCTTTTATGACTCTAAGTGTT  550

seq1  GAGAGTCTCAGTGTGTCAGGGGCATCTCACAGTTGTCCTCCTCTGACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTCAGTGTGTCAGGGGCATCTCACAGTTGTCCTCCTCTGACACC  600

seq1  CTCTAATGTCAAACAAGATGCAAGTTATTTGTCTGTTTCATTTTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGTCAAACAAGATGCAAGTTATTTGTCTGTTTCATTTTTTTTTA  650

seq1  AAGTAAGATCCCAAGAAAGCTGTTAATTTTTTAATGTTTCTTCTGCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGATCCCAAGAAAGCTGTTAATTTTTTAATGTTTCTTCTGCCAGG  700

seq1  GCAGGTGTGTGATCTCTTTTTGTTTATTAATTAATTTCTTGTTCTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTGTGATCTCTTTTTGTTTATTAATTAATTTCTTGTTCTGATTA  750

seq1  GTTTACTGTGTATAGGTTAGAGGCAATTCAATTTGATATTTTGACATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGTGTATAGGTTAGAGGCAATTCAATTTGATATTTTGACATTTA  800

seq1  GCCTGGTGGGAAATTGGTGAAGGTTCCCTCTACATCTAATTCTAAA-GGT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTGGTGGGAAATTGGTGAAGGTTCCCTCTACATCTAATTCTAAAGGGT  850

seq1  TGGAATTATTTCAGAGAATATGCTCAGGATAGTC-TTCATCAACAGAATG  898
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGATTTATTTCAGAGAATATGCTCAGGATAGTCTTTCATCAACAGAATG  900

seq1  AAATGTGGGTTGTGTAAGCTAGGGACTTCATGTTTGGGGCAGCTGAGGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATGTGGGTTGTGTAAGCTAGGGACTTCATGTTTGGGGCAGCTGAGTTG  950

seq1  GCTGGGGCAGCAGGGGCAGCTGGAGCAGCTGGGGCGGCTGGGAGCTTTGG  998
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCT-GGGCAGCAGGGGCAGCTGGAGCAGCTGGGGCGGCTGGGAGCTTTGG  999

seq1  TTCTCCATGAGCTCAGAGCTCCCATATAGTTGGAGCTCTTACCCCTGCAT  1048
      |||||||||||||||||||| |||||||||  ||||||||| ||||||||
seq2  TTCTCCATGAGCTCAGAGCT-CCATATAGT--GAGCTCTTA-CCCTGCAT  1045

seq1  CTGAAGCAGGCTCTCCTAATGACTGATCTGTTGTGCCCCAAAATTTTCAC  1098
       ||||||| |||   ||||||| ||||||| ||||  |||||||||   |
seq2  -TGAAGCAAGCTTCTCTAATGAATGATCTGGTGTG--CCAAAATTT---C  1089

seq1  AAAGCCCCATTTCCTTGCCCTATGGTCTAA  1128
      ||||  |||||||  || ||||||||||||
seq2  AAAG-TCCATTTC--TGTCCTATGGTCTAA  1116

seq1: chr11_55441741_55441946
seq2: B6Ng01-144F13.g_573_829

seq1  CAGAGATATGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTG--  48
      ||||||| |||||||||||| ||||||| |||||||||||||| ||||  
seq2  CAGAGATCTGCCTGCCTCTGTCTCCTGAATGCTGGGATTAAAGTTGTGTG  50

seq1  ----------TAG---TATTATTGTTTGGCTTGAGATTTTTGTAAC----  81
                |||   ||||| |  ||      | |||||||||||    
seq2  CCAAAACATCTAGCCTTATTAATACTTTTAAACATATTTTTGTAACACAT  100

seq1  ----------------TTTCAGTAGTTCTGACTTGTGGTT---------T  106
                      | | ||||  | | |||| |  ||         |
seq2  ATTTATATATGTTATATGTAAGTACATAT-ACTTATATTTCATTTTCTAT  149

seq1  TTGAAAGACACCAGGTGTGCATTCATGTATGCTGATCTTG---------A  147
      || | |  |  |   | |   || || | | || || |||          
seq2  TTTATACTCTTC-TTTATTATTTAATTTCTCCTAATTTTGGTTAATTATT  198

seq1  CTCTTCATAACCTCTTTTCTCAAAAAACAGATGATTTTATTTTCAATTAT  197
       | || | ||  |||||    |  ||| | || |||||||||||||||||
seq2  ATTTTTAGAAGTTCTTTAAAAATTAAAAAAATAATTTTATTTTCAATTAT  248

seq1  GTGTATGTG  206
      |||||||||
seq2  GTGTATGTG  257