BAC Information

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BAC

Clone NameB6Ng01-144M02
Chromosome7 (Build37)
Map Location 49,897,875 - 49,898,920
singlet/doubletsinglet
Overlap geneC330019L16Rik
Upstream gene2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776
Downstream geneEG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M02.bB6Ng01-144M02.g
ACCDH942345DH942346
length6331,031
definitionDH942345|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M02, 5' end.DH942346|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaacagagtgaggtaactcagattcaaaaggtattactcacta
atcattagatattaaccaaaatacagaatacccaagacacaacacacagg
actcaaaaggttaacaagcataagcacccaagtgagtttgcctcaaactc
actagggtgggaaaagaaagccattataggggtaagggtaagggaatgac
ctggttgggagagggcacagtgaggggaagtagggaaaatgatcaggtat
tgggtttggggaacaggactgaagccctgagggccaggagaaaggatcga
aacagctaacctctggtggtaggggcatactctagaatgtactggtgaca
tggaagttgaaaaactctcatgattcaaagagagagatcttggatgaagt
gctctacaatggggagtggttatttgtagagtccacttccagtagaagga
catgacatcaagtggagggatggggtttccttcccacagtcaaaagctct
gacccaggattgttcctgtctgatgaaactgcagggacaaaatgatgaag
aagagcatgagagaaagaaatctagtgacaggtccaaattggggtccagc
tcaagggggtctagggtcctgacattgttaata
gaattcccctcacagcacccagcagtagcacacagagcaggacacacaaa
ccacaccacactcctcagatatagtttggaaccggcagcatagcaccggg
aagcacccgcctccacttctgactggcaggtcagactggaggccgtgatt
ggccagcgagtcttgaatgacataagcaactcccttaaggttagtgtgtg
atgaagggactcagtttaatgattcctggcccacgttgctgttccagggc
cgaccgttttccagataatagggtgagagtgcactgatgggataaagcaa
aggggttgtgctaggaccccaggggcccaaatgttgagaacgcgacccct
agagacacagcttgacaatagatcgctgcaatggcaagacaggtttttat
tccaatgcgcacagggttgctcagcctcgcagggagagtaaatcccaact
gcttaaactacagttttttgttttttttaactactctttatttgtggggc
atggagggagggttacacaactttatcaatgttggccagcaaagtaacag
ttatgttttttacttttggtgtcagccagcgatgtcagaaactttgtcag
caaggtcggtttatcttagaattcaaactgaggccggggtcccagggacc
gtttttattgttatagcaaatttttgagaacagctagtcttgctatggca
gttgtggtcattttgaccattagacagtcccctcagatggggaagggggc
aggcagtcttgagcttctttacactggcagggaaaggcttgtttatatca
gcagggaaagggcaaggagcaggggaagggaaaggcttctgcaaactgag
aattcctcagcagcagggggaggaaagtctttgcttctggcttccagcac
tccccttctccttctgtaatcaaagcaagatagcttgcaggccattattt
actgcagttgtataaccatccagtcatagggtagggcacccatgatattg
acattgaggaattttagaaccctaagatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49897875_49898920
seq2: B6Ng01-144M02.g_69_1099

seq1  GAATTCCCCTCACAGCACCCAGCAGTAGCACACAGAGCAGGACACACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCACAGCACCCAGCAGTAGCACACAGAGCAGGACACACAAA  50

seq1  CCACACCACACTCCTCAGATATAGTTTGGAACCGGCAGCATAGCACCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCACACTCCTCAGATATAGTTTGGAACCGGCAGCATAGCACCGGG  100

seq1  AAGCACCCGCCTCCACTTCTGACTGGCAGGTCAGACTGGAGGCCGTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCGCCTCCACTTCTGACTGGCAGGTCAGACTGGAGGCCGTGATT  150

seq1  GGCCAGCGAGTCTTGAATGACATAAGCAACTCCCTTAAGGTTAGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCGAGTCTTGAATGACATAAGCAACTCCCTTAAGGTTAGTGTGTG  200

seq1  ATGAAGGGACTCAGTTTAATGATTCCTGGCCCACGTTGCTGTTCCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGACTCAGTTTAATGATTCCTGGCCCACGTTGCTGTTCCAGGGC  250

seq1  CGACCGTTTTCCAGATAATAGGGTGAGAGTGCACTGATGGGATAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCGTTTTCCAGATAATAGGGTGAGAGTGCACTGATGGGATAAAGCAA  300

seq1  AGGGGTTGTGCTAGGACCCCAGGGGCCCAAATGTTGAGAACGCGACCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGTGCTAGGACCCCAGGGGCCCAAATGTTGAGAACGCGACCCCT  350

seq1  AGAGACACAGCTTGACAATAGATCGCTGCAATGGCAAGACAGGTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACAGCTTGACAATAGATCGCTGCAATGGCAAGACAGGTTTTTAT  400

seq1  TCCAATGCGCACAGGGTTGCTCAGCCTCGCAGGGAGAGTAAATCCCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCGCACAGGGTTGCTCAGCCTCGCAGGGAGAGTAAATCCCAACT  450

seq1  GCTTAAACTACAGTTTTTTGTTTTTTTTAACTACTCTTTATTTGTGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACTACAGTTTTTTGTTTTTTTTAACTACTCTTTATTTGTGGGGC  500

seq1  ATGGAGGGAGGGTTACACAACTTTATCAATGTTGGCCAGCAAAGTAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGAGGGTTACACAACTTTATCAATGTTGGCCAGCAAAGTAACAG  550

seq1  TTATGTTTTTTACTTTTGGTGTCAGCCAGCGATGTCAGAAACTTTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTTACTTTTGGTGTCAGCCAGCGATGTCAGAAACTTTGTCAG  600

seq1  CAAGGTCGGTTTATCTTAGAATTCAAACTGAGGCCGGGGTCCCAGGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCGGTTTATCTTAGAATTCAAACTGAGGCCGGGGTCCCAGGGACC  650

seq1  GTTTTTATTGTTATAGCAAATTTTTGAGAACAGCTAGTCTTGCTATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTGTTATAGCAAATTTTTGAGAACAGCTAGTCTTGCTATGGCA  700

seq1  GTTGTGGTCATTTTGACCATTAGACAGTCCCCTCAGATGGGGAAGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTCATTTTGACCATTAGACAGTCCCCTCAGATGGGGAAGGGGGC  750

seq1  AGGCAGTCTTGAGCTTCTTTACACTGGCAGGGAAAGGCTTGTTTATATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCTTGAGCTTCTTTACACTGGCAGGGAAAGGCTTGTTTATATCA  800

seq1  GCAGGGAAAGGGCAAGGAGCAGGGGGAAGGGAAAGGCTTCTGCAAACTGA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGGGAAAGGGCAAGGAGCA-GGGGAAGGGAAAGGCTTCTGCAAACTGA  849

seq1  GAATTCCTCAAGCAGCAGGGGGGAGGGAAAGTC-TTGCTTCTGGCTTCCA  899
      ||||||||| ||||||||||||   |||||||| ||||||||||||||||
seq2  GAATTCCTC-AGCAGCAGGGGG--AGGAAAGTCTTTGCTTCTGGCTTCCA  896

seq1  GCACTCCCCTTCTCCCTCCTGTAATCAAGGC-AGATAGCTTGCAGGGCCC  948
      ||||||||||||| ||| |||||||||| || ||||||||||||||  ||
seq2  GCACTCCCCTTCT-CCTTCTGTAATCAAAGCAAGATAGCTTGCAGG--CC  943

seq1  ATTATTTAACTTGCAGTGTAATAAACAATCCAGTCCATAGGGGAAGGGCA  998
      ||||||||   ||||||   || ||| ||||||| |||| ||| ||||||
seq2  ATTATTTA--CTGCAGTTGTAT-AACCATCCAGT-CATA-GGGTAGGGCA  988

seq1  CCCAGAATATTGACAATTGAGGAGATTTTTAGGAAACACTAAGATTTT  1046
      ||||  |||||||| ||||||  || ||||||  ||| ||||||||||
seq2  CCCATGATATTGAC-ATTGAG--GAATTTTAG--AACCCTAAGATTTT  1031