BAC Information

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BAC

Clone NameB6Ng01-144O06
Chromosome7 (Build37)
Map Location 50,084,321 - 50,085,285
singlet/doubletsinglet
Overlap geneLOC100039706
Upstream geneEG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964
Downstream geneEG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144O06.bB6Ng01-144O06.g
ACCDH942446DH942447
length1,143896
definitionDH942446|Mus musculus domesticus DNA, BAC clone: B6Ng01-144O06, 5' end.DH942447|Mus musculus domesticus DNA, BAC clone: B6Ng01-144O06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactaagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctagcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaaacaaccactctggaaatcagtctggcggttcctcagaaaat
tggacatagtactaccggaggaccccgcaatacctctcctgggcatatat
ccagaagatgtcccaactggtaagaagaacacatgctccactatgttcat
agcagccttgtttataatagccagaagctggaaagaacccagatgcccct
caacagaggaatggatacagaaaatgtgggacatttacacaatggaatac
tactcagctatttaaaaataatgaatttatgaaattcctaggcaaatgga
tggacctggaggatatcatcctgagtgaagtaacccaatcacaaaggaac
tcgcacaatatgtactcactgataagtggatattagcccagaaacttagg
atacccaagatataagatacaagttgccaaacgcatgaaattcaagaaga
acgaagaccaaagtgtggacactttaccctttcttagaaatgggaacaaa
acacccatggaaggagttacagagacaaaatttggagctgtgacgaaagg
atggaccatctagtgattgccatatgcagggattcatcccataatcagct
tccaattgctgacaccattgcatacactagcaagattttgctgaaaggac
ccagatatagctctctcttgtgagactatgccggggcctagcaaacacag
aagtggatgatcacagtcagctatggatgggtcacagggcccccatggag
gagctaaagaaataccaagagctaacggaactgcaatcctgtaggtggac
acatatgactacagtacccgggagctcttgtcttagctgcatatgtatca
aagatgctagtgcatcactgccaaagagaggtcattgactgcaactttat
tgcccaatacaggacgccaggcaaaagaaattgtggtaggtat
gaattctctgttcagttctatagctcatattttgattggtttgttcaggt
ttttggtggttagctttttgaattctttatatattttagatattagcctt
ctagtagatgtgggtgaagattttttctcaatctgtaggttgctgctttg
tactattgactatatccttgccttggagaagctttccagtttcatatggt
accatttatcagttctagatcttagagcatgagccattggaattattttt
aagaaatttcccgctgtagcaatgaatattaggctctttctcactttctc
ttctatttgattcattgtatctggttttatattgaggtcattgatctact
tggacttaagctttatgcaatgtgataagtatggatttataatcattttt
ccacatacagactaccagttagaccagcaccatctagtggcccaaagtac
ttaagtcctgtttcccctccttcaaaacctgatcatattctctacttctc
cttcctgtccccactccctctgccccttcccccaccttgatttctttgtt
ttccctcccaagtgggattgaggcaaccacacatgcacgcttcagctatt
tctcccacttgcaaaagcgcttcactctttaatgaggaacatgatgttgg
ggcacaaaggtccttgcacccacagatcaccagggaaaccaggaatctta
aatatacagaggcctgcactcaattgaagaaaataaagagctgaagagat
ggctcagtggttgagagcaccaactgctcttcctaaggtcctgagttcaa
atcccagcaaacacttggaggctcacaaccatctgtaatgagatttctgg
aagagagaggctaattagcattgctcagaccaaggtgtgggactcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50084321_50085285
seq2: B6Ng01-144O06.g_167_902

seq1  TACTAGATGTGGGTGAAGATTTTTTTCTCAATCTGTAGGTTGCTGCTTTG  50
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGTAGATGTGGGTGAAGA-TTTTTTCTCAATCTGTAGGTTGCTGCTTTG  49

seq1  TCATATTGACTATATCCTTGCCTTACAGGACCTTTCCAGTTTCATAAGGT  100
      |  |||||||||||||||||||||  || | ||||||||||||||| |||
seq2  TACTATTGACTATATCCTTGCCTTGGAGAAGCTTTCCAGTTTCATATGGT  99

seq1  ACCATTTATCAATTCTAGATCTTAGAACATGAGCCATTGGAATTCTGTTT  150
      ||||||||||| |||||||||||||| ||||||||||||||||| | |||
seq2  ACCATTTATCAGTTCTAGATCTTAGAGCATGAGCCATTGGAATTATTTTT  149

seq1  AGGAAATTTCCTTCTGTGGCAATAAATATTAGGTTCTTTCTCACTTTCTC  200
      | |||||||||  |||| ||||| ||||||||| ||||||||||||||||
seq2  AAGAAATTTCCCGCTGTAGCAATGAATATTAGGCTCTTTCTCACTTTCTC  199

seq1  TTCTATTTAATTCATTGTATCTGGTTTTATATTGAGGTCATTGATCCACT  250
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTATTTGATTCATTGTATCTGGTTTTATATTGAGGTCATTGATCTACT  249

seq1  TGGACTTAAGCTTTGTGCAATGTGATAAGAATGGATCTATATTCATTTTT  300
      |||||||||||||| |||||||||||||| |||||| |||| ||||||||
seq2  TGGACTTAAGCTTTATGCAATGTGATAAGTATGGATTTATAATCATTTTT  299

seq1  CCACATACAGACTACCAGTTAGACCAGCACCATCTAGTGGTCCTCAGGAC  350
      |||||||||||||||||||||||||||||||||||||||| ||  || ||
seq2  CCACATACAGACTACCAGTTAGACCAGCACCATCTAGTGGCCCAAAGTAC  349

seq1  TTAAGTCCTGTTTCCCCTCTCTCAAAACCTGATCATGTTCCCTACTTCCC  400
      |||||||||||||||||||  ||||||||||||||| ||| ||||||| |
seq2  TTAAGTCCTGTTTCCCCTCCTTCAAAACCTGATCATATTCTCTACTTCTC  399

seq1  CTTCCTGTCCCCACTCCCTCTGCCCCTTCCCCCACTGTGATTGCTTTCTT  450
      |||||||||||||||||||||||||||||||||||  ||||| |||| ||
seq2  CTTCCTGTCCCCACTCCCTCTGCCCCTTCCCCCACCTTGATTTCTTTGTT  449

seq1  TTCCCTCCCAAGTAGGATTGAGGCAACCAAACATGCACTCTTCAGCTACT  500
      ||||||||||||| ||||||||||||||| |||||||| ||||||||| |
seq2  TTCCCTCCCAAGTGGGATTGAGGCAACCACACATGCACGCTTCAGCTATT  499

seq1  TCTCCCACTTGCAAAAGAGCTTCACGCTTTAATGAGGAACATGATGTTGG  550
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TCTCCCACTTGCAAAAGCGCTTCACTCTTTAATGAGGAACATGATGTTGG  549

seq1  GGCACAAAGGTCCTTGCATCCAAAGATCACCAGGGAAACCAGGAATCTTA  600
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  GGCACAAAGGTCCTTGCACCCACAGATCACCAGGGAAACCAGGAATCTTA  599

seq1  AATATACAGAGGCCTGCACTCAATTGAAGAAAATAAAGGGCTGGAGATAT  650
      |||||||||||||||||||||||||||||||||||||| |||| ||| ||
seq2  AATATACAGAGGCCTGCACTCAATTGAAGAAAATAAAGAGCTGAAGAGAT  649

seq1  AACTCAGTGGTTAAGAGCACCAACTGTTGTTCCGAAGGTCCTGAGTTCAA  700
        |||||||||| ||||||||||||| | |||| ||||||||||||||||
seq2  GGCTCAGTGGTTGAGAGCACCAACTGCTCTTCCTAAGGTCCTGAGTTCAA  699

seq1  ATCCCAGCAAACACATAATGGCTCACAACCATCCATAATGAGATCTGATG  750
      |||||||||||||| |   ||||||||||||||  ||             
seq2  ATCCCAGCAAACACTTGGAGGCTCACAACCATCTGTA-------------  736

seq1  CCCTCTTCTAGTGCATCTGAAGACAGTTACAGTGTACTTACATATAATAA  800
                                                        
seq2  --------------------------------------------------  736

seq1  TAAATAAATCTTGAAAAAGAACAAGAAAAAGAAATGAAAATACCTACATA  850
                                                        
seq2  --------------------------------------------------  736

seq1  CAACCTAAAAGTCTGGAAGTGGATTTTCTTTCTTTTCAGAGCAAGCAGGG  900
                                                        
seq2  --------------------------------------------------  736

seq1  CTAGAGCAAGCAGAGGTCCTGAGTTCAATTCCCAGCAATCACATGGTAGC  950
                                                        
seq2  --------------------------------------------------  736

seq1  TCACAACCATCTGTA  965
                     
seq2  ---------------  736