BAC Information

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BAC

Clone NameB6Ng01-145J19
Chromosome7 (Build37)
Map Location 67,004,419 - 67,010,216
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1
Downstream geneLOC664788, Snrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145J19.bB6Ng01-145J19.g
ACCDH942967DH942968
length1,138832
definitionDH942967|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J19, 5' end.DH942968|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,009,068 - 67,010,216)(67,004,419 - 67,007,775)
sequence
gaattctgaactctcagaggagtttgattttacctcatgcaaagacccag
aagtaatgatcagagaaggactggagccatgattgaaggctcaaaagttg
ttggcttagatatccttggaggcccaatattgctggtggagttattcaga
gctgcctcctccttcttcgactgcataggcaaggggaactatgattgccc
ttgttattggctttttctgactgcatgcttggagaagagccttcattccc
ttgaaaactatgctcaggacactggtggaggaagttgatggcaaagacct
aagagaaagtgttgagtacctgtattgcagctcacatatcatccttaagt
ccttagagtgagctgaggacccagcaagcacttgagacaaagggcatggc
atgttcacatccaaggcctgagagtaacagcaagtgagatctggaagggc
agtgtgaagaggttggtaagagcaggagtgttgagggtgcctgtgagata
tgagaagcccatagtacatggtaagcccataatccatgtggttttgcatt
ggtcccactgtaatcggggcatgttctttgtgttgtcttcacagggttgc
attccctttccagtatggtccatggaaaacatgcagaggaaatggcccca
cagcattggctgagtgtttatgtcgtccaactgagtctccatcgaactgt
tgtggtgttgctgacttgccctaggtcacctgagttaaatggtaaggaac
atgggaattgctgcatgaattctaggtgcccaggtcttggtggagcaggg
aacggctgccattgattatgtccaggcccttcgggacatggagcatgcct
agggcctctggtttctcccatgtttggagcttcggcccattgttccctgg
cagtgaatgtcagtgtcagcagtccattgctctccccaaagccagagcaa
tccagagtactggaaccacttgatgcaatgcactccaacgagcttggatc
taatgatgattcccagtcaaacatcctggaaaagctgacaaatggattga
aaacttgtaccgccactcctcatcggactgaagtccagccttctggacta
aggtgctatggggttaggaaaggctgccaaacactcca
gaattcatgcagcaattcccatgttccttaccatttaactcaggtgacct
agggcaagtcagcaacaccacaacagttcgatggagactcagttggacga
cataaacactcagccaatgctgtggggccatttcctctgcatgttttcat
ggaccatactggaaagggaatgcaaccctgtgaagacaacacaaagaaca
tgccccgattacagtgggaccaatgcaaaaccacatggattatgggctta
ccatgtactatgggcttctcatatctcaggcaccttcaacactcctgctc
ttaccaacctcttcatactgcccttccagatctcacttgctgttactctc
aggccttggatgtgaacatgccatgccctttgtctcaagtgcttgctggg
tcctcagctcactctaaggacttaaggatgatatgtgagctgcaatactg
gtactcaacactttctcttaggtccatgccatcaacttcctccaccagtg
tcctgagcatagttttcaagggaatgaaggctcttctccaagcatgcagt
cagaaaaagccaataacaagggcaatcataggtccccttgctatgcattc
gaagaaagaggaggcagctctgaataagtccaccagcaacatttggcctc
caagaatacctaagccaacaacttttgagccttcaatcatggctccagtc
cttctctgatcattacttctgggtctttgcatgaggtaaagtcaaactcc
tctgagagttcagaatactagctcatggagcagcttcatttttacagctg
aaggaagcacctctctctcttctctctgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_67009068_67010216
seq2: B6Ng01-145J19.b_48_1185 (reverse)

seq1  TGGAGTGGTTGGGCAGCCTGTGCCTGACGCCCATAGCACCTGGGAGACCC  50
      |||||| ||| |||||||| | ||| || ||||||||||||  |    ||
seq2  TGGAGT-GTTTGGCAGCCT-TTCCTAAC-CCCATAGCACCTTAG---TCC  44

seq1  AAGATGCTGGACCTCAGTTCCGATGA-GAGTGGCGGTACAGAGTTTCCAC  99
      |  | ||||||| |||| |||||||| ||||||||||||| ||||| || 
seq2  AGAAGGCTGGACTTCAG-TCCGATGAGGAGTGGCGGTACA-AGTTTTCAA  92

seq1  TCATTTTGTTCAGCTTTTCCAAGGAATGTTTGACTGGGAATCATCA-TAG  148
      ||  |||| ||||||||||||  | ||||||||||||||||||||| |||
seq2  TCCATTTG-TCAGCTTTTCCA--GGATGTTTGACTGGGAATCATCATTAG  139

seq1  ATCCAAGCTCGTTGGAGTGCATTGCATCAAGTGGTTCCAGTACTCTGGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCAAGCTCGTTGGAGTGCATTGCATCAAGTGGTTCCAGTACTCTGGAT  189

seq1  TGCTCTGGCTTTGGGGAGAGCAATGGACTGCTGGACACTGACAATCCACT  248
      |||||||||||||||||||||||||||||||| ||||||||| || ||||
seq2  TGCTCTGGCTTTGGGGAGAGCAATGGACTGCT-GACACTGAC-ATTCACT  237

seq1  GCCAGGGAACAATGGGCCAAAGCTCAAAACATGGGAGAAACCAGAGGCCC  298
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GCCAGGGAACAATGGGCCGAAGCTCCAAACATGGGAGAAACCAGAGGCCC  287

seq1  TAGGCATGCTCCATGTCCCGAAGGGCCTGGACATAATCAATGGCAGCTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGCATGCTCCATGTCCCGAAGGGCCTGGACATAATCAATGGCAGCCGT  337

seq1  TCCCTGCTCCACCAAGACCTGGGCACCTAGAATTCATGCAGCAATTCCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCCACCAAGACCTGGGCACCTAGAATTCATGCAGCAATTCCCA  387

seq1  TGTTCCTTACCATTTAACTCAGGTGACCTAGGGCAAGTCAGCAACACCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTACCATTTAACTCAGGTGACCTAGGGCAAGTCAGCAACACCAC  437

seq1  AACAGTTCGATGGAGACTCAGTTGGACGACATAAACACTCAGCCAATGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCGATGGAGACTCAGTTGGACGACATAAACACTCAGCCAATGCT  487

seq1  GTGGGGCCATTTCCTCTGCATGTTTTCCATGGACCATTCTGGAAAGGGAA  548
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGGGGCCATTTCCTCTGCATGTTTTCCATGGACCATACTGGAAAGGGAA  537

seq1  TGCAACCCTGTGAAGACAACACAAAGAACATGCCCTGATTACAGTGGGAC  598
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCAACCCTGTGAAGACAACACAAAGAACATGCCCCGATTACAGTGGGAC  587

seq1  CAATGCAAAACCACATGGATTATGGGCTTACCATGTACTATGGGCTTGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAATGCAAAACCACATGGATTATGGGCTTACCATGTACTATGGGCTTCTC  637

seq1  ATATCTCACAGGCACCCTCAACACTCCTGCTCTTACCAACCTCTTCACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCACAGGCACCCTCAACACTCCTGCTCTTACCAACCTCTTCACAC  687

seq1  TGCCCTTCCAGATCTCACTTGCTGTTACTCTCAGGCCTTGGATGTGAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCCAGATCTCACTTGCTGTTACTCTCAGGCCTTGGATGTGAACA  737

seq1  TGCCATGCCCTTTGTCTCAAGTGCTTGCTGGGTCCTCAGCTCACTCTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCCCTTTGTCTCAAGTGCTTGCTGGGTCCTCAGCTCACTCTAAG  787

seq1  GACTTAAGGATGATATGTGAGCTGCAATACTGGTACTCAACACTTTCTCT  848
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACTTAAGGATGATATGTGAGCTGCAATACAGGTACTCAACACTTTCTCT  837

seq1  TAGGTCTTTGCCATCAACTTCCTCCACCAGTGTCCTGAGCATAGTTTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTGCCATCAACTTCCTCCACCAGTGTCCTGAGCATAGTTTTCA  887

seq1  CGGGAATGAAGGCTCTTCTCCAAGCATGCAGTCAGAAAAAGCCAATAACA  948
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGAAGGCTCTTCTCCAAGCATGCAGTCAGAAAAAGCCAATAACA  937

seq1  AGGGCAATCATAGGTCCCCTTGCCTATGCAGTCGAAGAAGGAGGAGGCAG  998
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGGCAATCATAGTTCCCCTTGCCTATGCAGTCGAAGAAGGAGGAGGCAG  987

seq1  CTCTGAATAACTCCACCAGCAAAATTGGGCCTCCAAGGATATCTAAGCCA  1048
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTGAATAACTCCACCAGCAATATTGGGCCTCCAAGGATATCTAAGCCA  1037

seq1  ACAACTTTTGAGCCTTCAATCATGGCTCCAGTCCTTCTCTGATCATTGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACAACTTTTGAGCCTTCAATCATGGCTCCAGTCCTTCTCTGATCATTACT  1087

seq1  TCTGGGACTTTGCATGAGGTAAAATCAAACTCCTCTGAGAGTTCAGAATT  1148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCTTTGCATGAGGTAAAATCAAACTCCTCTGAGAGTTCAGAATT  1137

seq1  C  1149
      |
seq2  C  1138

seq1: chr7_67004419_67007775
seq2: B6Ng01-145J19.g_66_896

seq1  GAATTCATGCAGCAATTCCCATGTTCCTTACCATTTAACTCAGGTGACCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGGCAAGTCAGCAACACCACAACAGTTCGATGGAGACTCAGTTGGACGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATAAACACTCAGCCAATGCTGTGGGGCCATTTCCTCTGCATGTTTTCCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGACCATACTGGAAAGGGAATGCAACCCTGTGAAGACAACACAAAGAAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCCCCGATTACAGTGGGACCAATGCAAAACCACATGGATTATGGGCTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACCATGTACTATGGGCTTGTCATATCTCACAGGCACCCTCAACACTCCTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTTACCAACCTCTTCACACTGCCCTTCCAGATCTCACTTGCTGTTACT  350
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGGCCTTGGATGTGAACATGCCATGCCCTTTGCTCTCAAGTGCTTGC  400
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTCCTCAGCTCACTCTAAGGACTTAAGGATGATATGTGAGCTGCAAT  450
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGTACTCAACACTTTCTCTTAGGTCCATGCCATCAACTTCTTCCACC  500
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTCCTGAGCAAAGTTTCAAGGGAATGAAGGCTCTTCTCCAAGCATCC  550
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCAGAAAAAGCCAATAACAAGGGCAATCATAGGTCCCCTTGCCTATGC  600
                                                        
seq2  --------------------------------------------------  0

seq1  TGACGAAGAAGGAGGCAGCTCTGAATAACTCCACCAGCAATATTGGGCCT  650
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAGGATATCTAAGCCAACAACTTTTGAGCCTTCAATCATGGCTCCAGT  700
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCTCTGATCATTACTTCTGGGTCTTTGCATGAGGTAAAATCAAGCTC  750
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGAGAGTTCAGAACTCCAGGTCATGGGAAGCAGGCTTCATTTTCACA  800
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGAAAGGAACCCCCCTCTCTCTCCCTCTCTCTGTGTTAGTGTGTGTGT  850
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTTACCCTGAGACATTCCTT  900
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGTGGCAGCCAGGCTCTATTTCTGTCTACCTATCCAGTGCTCATTTTG  950
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTTGTGAAGACTTCCACCTCTCTCATGAGATTGCTTTTGGCCATCCA  1000
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCTGCTTTGATCTCTTCTGGTGAAAAGTTCTCAGGCTATACTGCTCAG  1050
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTCACACTAATGAAAATCCCATTGTGCAGAACTATCACAGGCCAGGA  1100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCGACTTGACTCAAGTTATCTTAGTGTGTCAAATGCAGTCTGCATCCAA  1150
                                                        
seq2  --------------------------------------------------  0

seq1  GAACTTATTTTCTCCCTGATGATTCCCATGAGCATGGCTCTCAAGGTGGA  1200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGCAAAACACGATGTGCCCTGTTGAAACCTCCTTCCTATGCACACTAG  1250
                                                        
seq2  --------------------------------------------------  0

seq1  CAACTTGTCTTTCCAGAAGAGTTAGGCCAAAACATCGAAAAGAAAGGTCC  1300
                                                        
seq2  --------------------------------------------------  0

seq1  CATGACACCTTGGTCTCTAATTTAGAGGGTCCCTCACCAAGATGGTTCTC  1350
                                                        
seq2  --------------------------------------------------  0

seq1  CTAAGGCTGTAAGTGCAAGAACTGTTCCTAGACTTTCCCTTTGACCTTGC  1400
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGCAGGCTGACAACAAGGTCCAAATATACCAAGGATATCCCTTCCACA  1450
                                                        
seq2  --------------------------------------------------  0

seq1  ACATCCAAAGCAACAGCACCTACCAAAGAGGAGATTCCTTCAAAAATTAT  1500
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAACAAATCTATGGAGACACAGGTCTGCAAGTCTCATGCTGCCAGCGA  1550
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCATCAAAGTTTCATCGGTCTACAGACACAGGTAAGTGTGTAAATGTG  1600
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCAAACTGACCCGTGAGGTGCCTGCCATCACTTCCAAGACTTAGCTCC  1650
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTATTTCCTAGCCTATCCCCCGGGAAACTTCCAAGCTGCCAGGGAC  1700
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAGCTTTCTGTTCACCAACTGAACTGACAACAGTCACACAGTCCCAT  1750
                                                        
seq2  --------------------------------------------------  0

seq1  TTACATGCTAATGGGTCAAGCTACACTCTACCAGCAGCCTGCATTCTATT  1800
                                                        
seq2  --------------------------------------------------  0

seq1  GATTATGTAAAGCAATGCAACAGGGTTAAAATTCATATAAGTGCTTCTGA  1850
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGCCGGAGTCCACTGCTTGATATTCCCCTGTGAAAAGCCATGTTATGG  1900
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCACTGCCACTGCTACTTTTGCCTCACAGTCTACTTTCCACAATGGCT  1950
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGCCCTCTCCTTGGACCTAGCATGACTATCCACTGAGTATCTGCCAAG  2000
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTCCACTACAGCAAAGGGAGCAAGCCACCAGAGCTTAAGGACCTGCT  2050
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTCCTACGCCATGGATTTTTGGCAGAGTAGGCCAAGCACACACCTGTC  2100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGGAGAGTCTGGCTAGAGCCAGAAGAAGTCAAGAACAATGGAGTGGTT  2150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCAGCCTGTGCCTGACGCCCATAGCACCTGGGAGACCCAAGATGCTGG  2200
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTCAGTTCCGATGAGAGTGGCGGTACAGAGTTTTCACTCATTTTGTTC  2250
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTTTTCCAAGGAATGTTTGACTGGGAATCATCATAGATCCAAGCTCGT  2300
                                                        
seq2  --------------------------------------------------  0

seq1  TGGAGTGCATTGCATCAAGTGGTTCCAGTACTCTGGATTGCTCTGGCTTT  2350
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGAGAGAAATGGACTGCTGGACACTGACAATCCACTGCCAGGGAACAA  2400
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGCCGAAGCTCCAAACATGGGAGAAACCAGAGGCCCTAGGCATGCTCC  2450
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTCCCGAAGGGCCTGGACATAATCAATGGCAGCCGTTCCCTGCTCCAC  2500
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGACCTGGGCACCTAGAATTCATGCAGCAATTCCCATGTTCCTTACCA  2550
                       |||||||||||||||||||||||||||||||||
seq2  -----------------GAATTCATGCAGCAATTCCCATGTTCCTTACCA  33

seq1  TTTAACTCAGGTAACCTAGGGCCAGTCAGCAACACCACAACAGTTCGATG  2600
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  TTTAACTCAGGTGACCTAGGGCAAGTCAGCAACACCACAACAGTTCGATG  83

seq1  GAGACTCGGTTGGACGACATAAACTCTCAGCCAATGCTGTGGGGCCATTT  2650
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  GAGACTCAGTTGGACGACATAAACACTCAGCCAATGCTGTGGGGCCATTT  133

seq1  CCTCTGCATGTTTTCTATGGATCATACTGGAAAGGGAATGCAACCCTGTG  2700
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CCTCTGCATGTTTTC-ATGGACCATACTGGAAAGGGAATGCAACCCTGTG  182

seq1  AAGACAACACAGAGAACATGCCCCGATTACAGTGGGACCAATGCAAAACC  2750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACACAAAGAACATGCCCCGATTACAGTGGGACCAATGCAAAACC  232

seq1  ACATGGATTATGGGCTTACCATGTACTATGGGCTTGTCATATCTCACAGG  2800
      ||||||||||||||||||||||||||||||||||| ||||||||  ||||
seq2  ACATGGATTATGGGCTTACCATGTACTATGGGCTTCTCATATCT--CAGG  280

seq1  CACCCTCAACACTCCTGCTCTTACCAACCTCTTCACACTGCTCTTCCAGA  2850
      |||| |||||||||||||||||||||||||||||| ||||| ||||||||
seq2  CACCTTCAACACTCCTGCTCTTACCAACCTCTTCATACTGCCCTTCCAGA  330

seq1  TCTCACTTGCTGTTACTCTCAGGCCTTGGATGTGAACATGCCATGCCCTT  2900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTGCTGTTACTCTCAGGCCTTGGATGTGAACATGCCATGCCCTT  380

seq1  TGTCTCAAGTGCTTGCTGGGTCCTGAGCTCACTCTAAGGACTTAAGGATG  2950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTCTCAAGTGCTTGCTGGGTCCTCAGCTCACTCTAAGGACTTAAGGATG  430

seq1  ATATGTGAGCTGCAATACAGGTACTCAACACTTTCTCTTAGGTCTTTGCC  3000
      |||||||||||||||||| |||||||||||||||||||||||||  ||||
seq2  ATATGTGAGCTGCAATACTGGTACTCAACACTTTCTCTTAGGTCCATGCC  480

seq1  ATCAACTTCCTCCACCAGTGTCCTGAGCATAGTTTTCAAGGGAATGGAGG  3050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCAACTTCCTCCACCAGTGTCCTGAGCATAGTTTTCAAGGGAATGAAGG  530

seq1  CTCTTCTCCAAGCATGCAGTCAGAAAAAGCCAATAACACGGGCAATTATA  3100
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CTCTTCTCCAAGCATGCAGTCAGAAAAAGCCAATAACAAGGGCAATCATA  580

seq1  GGTCCCCTTGCCTATGCAGTCGAAGAAGGAGGAGGCAGCTCTGAATAACT  3150
      |||||||||| ||||||| |||||||| |||||||||||||||||||| |
seq2  GGTCCCCTTG-CTATGCATTCGAAGAAAGAGGAGGCAGCTCTGAATAAGT  629

seq1  CCACCAGCAATATTGGGCCTCCAAGGATATCTAAGCCAACAACTTTTGAG  3200
      |||||||||| ||| |||||||||| ||| ||||||||||||||||||||
seq2  CCACCAGCAACATTTGGCCTCCAAGAATACCTAAGCCAACAACTTTTGAG  679

seq1  CCTTCAATCATGGCTCCAGTCCTTCTCTGATCATTACTTCTGGGTCTTTG  3250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATCATGGCTCCAGTCCTTCTCTGATCATTACTTCTGGGTCTTTG  729

seq1  CATGAGGTAAAATCAAACTCCTCTGAGAGTTCAGAATTCCAGCTCATGGG  3300
      ||||||||||| ||||||||||||||||||||||||| | ||||||||| 
seq2  CATGAGGTAAAGTCAAACTCCTCTGAGAGTTCAGAATACTAGCTCATGG-  778

seq1  AAGCAGGCTTCATTTTCACAGCTGAAAGGAACCCCCTCTCTCTCCCTCTC  3350
       |||| |||||||||| ||||||| |||||| | ||||||||| | ||||
seq2  -AGCA-GCTTCATTTTTACAGCTG-AAGGAAGCACCTCTCTCT-CTTCTC  824

seq1  TCTGTGT  3357
      |||||||
seq2  TCTGTGT  831