BAC Information

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BAC

Clone NameB6Ng01-145M06
Chromosome7 (Build37)
Map Location 5,379,365 - 5,380,442
singlet/doubletsinglet
Overlap genenone
Upstream geneRdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163
Downstream geneV1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M06.bB6Ng01-145M06.g
ACCDH943082DH943083
length1,2321,072
definitionDH943082|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M06, 5' end.DH943083|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcacaattggtgctggc
acactggttgttatcgtgtagaagaatgcgatcgatcatactatctcttg
tactaagtcaaatctagtggatcagacttcacataaaacagagaaactga
aactatagaggagaaagtggggaaagcctgagatatgggcacaggaaatt
ctgaacagaagcatggctggccttagatccgaaatgcaatggacctatgg
aattccaggtctgcagcaaaaatccgcttagacaaagccacagattaaga
cttaccatctctaatcggaggggacatctaac
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccacctgttgagttctttatatacattggatattagtcccc
tatctgatttatgataggtaaagactcttcctctgagcatgactctgctc
catttaccaggaagaagtatgacaaactggtaggtgctcaagacacaggt
ggaagacaagtttgtgcttagagccaccaggcaaatgaagtaccaaattt
acaagagaggtcactgggggccttctatggaagaaatactgtactgctgt
ttggaattgccaagaggatgagattgaatgcactggccaccgctaagttt
gttactaagtcctgtatgggtgtgggttgacagtcaaaattacagggaaa
ttctggatgaacagaaggaagtttgccacagtcccaaccccaacttgaca
aagcaaaaatatatttatagccatttcctcctcggttttcagggttttat
tatgggacagcatggagatggcttcattagacaatggaataatgattaag
tttgacaatcctgtcttcaattgtctcctcaattatctaagtctttgaac
tgatttggagtccttttcccaaagaaatgtggaacaactatatgacactg
caggagctatgtctggaagacaatttgtagacattgatctagattaccaa
ttttacacttatctcactttaaattcctttatgaaggagatgtatatatg
atgcaactccatctctgttggtcaacaacatgacataaatttttatggtc
tctgcatattgatacatgaacatttatagacagaagtgcatttttgcttc
attagcattcaacatctttcctcatgtaaaacagtatattaagaaaaaca
aattagttgttggagaaatgttctggagataatgtcttcttctcatgttg
tgaccctgaattcatatatttcaatcaaacatggcagaaaaacatcatcc
acatgaattaaatgagcacattgtaaaataagcctgggtcctggagataa
tggtgctgggctccctacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5379365_5380442
seq2: B6Ng01-145M06.g_69_1140

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCTGTTGAGTTCTTTATATACATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTGTTGAGTTCTTTATATACATTGGATATTAGTCCCC  100

seq1  TATCTGATTTATGATAGGTAAAGACTCTTCCTCTGAGCATGACTCTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTATGATAGGTAAAGACTCTTCCTCTGAGCATGACTCTGCTC  150

seq1  CATTTACCAGGAAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCAGGAAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGT  200

seq1  GGAAGACAAGTTTGTGCTTAGAGCCACCAGGCAAATGAAGTACCAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAAGTTTGTGCTTAGAGCCACCAGGCAAATGAAGTACCAAATTT  250

seq1  ACAAGAGAGGTCACTGGGGGCCTTCTATGGAAGAAATACTGTACTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGGTCACTGGGGGCCTTCTATGGAAGAAATACTGTACTGCTGT  300

seq1  TTGGAATTGCCAAGAGGATGAGATTGAATGCACTGGCCACCGCTAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTGCCAAGAGGATGAGATTGAATGCACTGGCCACCGCTAAGTTT  350

seq1  GTTACTAAGTCCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAAGTCCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAA  400

seq1  TTCTGGATGAACAGAAGGAAGTTTGCCACAGTCCCAACCCCAACTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATGAACAGAAGGAAGTTTGCCACAGTCCCAACCCCAACTTGACA  450

seq1  AAGCAAAAATATATTTATAGCCATTTCCTCCTCGGTTTTCAGGGTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAATATATTTATAGCCATTTCCTCCTCGGTTTTCAGGGTTTTAT  500

seq1  TATGGGACAGCATGGAGATGGCTTCATTAGACAATGGAATAATGATTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGACAGCATGGAGATGGCTTCATTAGACAATGGAATAATGATTAAG  550

seq1  TTTGACAATCCTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAATCCTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAAC  600

seq1  TGATTTGGAGTCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGAGTCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTG  650

seq1  CAGGAGCTATGTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTATGTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAA  700

seq1  TTTTACACTTATCTCACTTTAAATTCCTTTATGAAGGAGATGTATATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTTATCTCACTTTAAATTCCTTTATGAAGGAGATGTATATATG  750

seq1  ATGCAACTCCATCTCTGTTGGTCAACAACATGACATAAA-TTTTATGGTC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGCAACTCCATCTCTGTTGGTCAACAACATGACATAAATTTTTATGGTC  800

seq1  TCTGCATATTGATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATATTGATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTC  850

seq1  ATTAGCATTCAACATCTTTCCTCATGTTATAACAGTATATTAAGAAATAC  899
      |||||||||||||||||||||||||| || ||||||||||||||||| ||
seq2  ATTAGCATTCAACATCTTTCCTCATG-TAAAACAGTATATTAAGAAAAAC  899

seq1  AAATTAGTTGTTGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AAATTAGTTGTTGGAGAAATG-TTCTGGAGATAATGTCTTCTTCTCATG-  947

seq1  TTGTGACACTGAATTCATATATTCCAATCATACATGCAAGAAAAACAATC  999
      ||||||| ||||||||||||||| |||||| |||||  |||||||| |||
seq2  TTGTGACCCTGAATTCATATATTTCAATCAAACATGGCAGAAAAAC-ATC  996

seq1  ATACACATGAAATAAAATGAGCACATTGTTAAAAATAAAGCCTGGGT-CT  1048
      || |||||| ||| |||||||||||||||  ||||| |||||||||| ||
seq2  ATCCACATG-AATTAAATGAGCACATTGT--AAAAT-AAGCCTGGGTCCT  1042

seq1  GGAG-TAATGGTGCTGGCTGCT-CTTACAGAA  1078
      |||| ||||||||||||  ||| | |||||||
seq2  GGAGATAATGGTGCTGG--GCTCCCTACAGAA  1072