BAC Information

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BAC

Clone NameB6Ng01-146O11
Chromosome7 (Build37)
Map Location 96,339,419 - 96,477,936
singlet/doubletdoublet
Overlap geneTmem135, LOC100039969
Upstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneFzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O11.bB6Ng01-146O11.g
ACCDH943927DH943928
length1,1141,003
definitionDH943927|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O11, 5' end.DH943928|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,339,419 - 96,340,545)(96,477,410 - 96,477,936)
sequence
gaattcaggacatcagacttcatggcaaattccttcacctgctgagccac
ctcactggacccacagctaccatcaaagaaccctcagtagacaagtgcat
atatttataaagcagtcagttcctgatgaaaactggaagtgatcataaat
gtgtgccaatagtttttttttcctgaaaacatattgtgaaaaatagataa
ggcagtagtgacaaatcgaattaagttctagaatgttctcatgacacatc
tgtcacacttaaaatgacatggtggtcagtgaatgttagatgttacaatg
catcactggccatttctctgtggtttataaacaaagacagatgttttctc
taaacaccttgcaaagaagcttaccaacaataaatgaatgtgaatttttg
cacctcaaggggcatttttaatatatgaggaacaaacaaaatttgggata
gcattgtgcttccggtatgagggcccacgcttttatgaaccatcacagaa
atcaaacgtcagttccattgttttctgtcacctgagtattaatatcagtc
ttttgtggtatgtgactgagtcccagatcgtcaaggactgcatacatgct
tgtcacagcagaagcacaggggcagctaagacccagatctcctaagcatc
cccagagggcaaaatcgaaagctgtataaaacaaatggaaaatgagaata
atacttctttgtttgctattagctacttccagaacagaaaggtacgctag
tgaaaatgccttcattggagagacagtctgcagcaacatgctcctttaaa
tacaaacactaaatctatgccctgagaatgacaaaaacggcttcttatac
gtgcctgaccagaactcaacaaatggcagaaaaaataagaatacaaacag
acagaggacagagactagacacagaccgaccctcagacagacaccaccac
agtgtgtctcatatgattaccacttgtgtattgtagcacattctacatta
tggtgtggatgagtggcttatgccaagtttagctcctcaagctccacatc
taagcaaactgctgcctccctgtctgctccacagggggaaggaggaagga
ttcagcaggtagtc
gaattctctgtttagctctgcacccctatttttaatagggttatttgatt
tgctggtgtttaatttcttgtgttctttatatcttttagatattatccct
ctttcaaatgtagagttggtgaagatcttttccttctgtcctattgactg
tgttcctttgccttacaaaagcttttaagtttcaagaggttccattgatt
agttgtcagtcttagtccctgagctgctgttgttctgttcaggaagttgt
ctcctgcaccaatgtgttcaaggctattccccactttctgttctactaca
tttagtgtatatggttttatgttgagatctttgatcctcttggacttgag
ttttgtgcaggctgatggctatatctatttgttcttctacatgtaggcat
ccaattagaaaaacaccatttgttgaagatgctgtctttttttcctttgt
atggttttgacttcttggtcaaaaatcaagtgtctgtaggtgactttatt
tatggatcttcaattcaattccattgatcagtctgtctgcttttatgcca
ataccatgggttatttttgtttttaaaattacttttactctgtagtacag
cttgaaattaggaatggtaatacctccagaagttcttttattgtacagga
ttgttttactatcctgggtttttttgtttttccatatgaagttgtgaatt
gctattttaaagtctataaaaaagtgagttggaatttgatgagaattgca
ttgaatctgtagatttgcttttgctaagatggtcatttttactatgttaa
tcctgctgatccacgagggcgggagattgttccatcttttgatatcttct
tcagtttctttcttcagagacttgaagttcttgtcatacacttgcttgtt
tagagtacacagtgatactcaattttaaacattgactccctccaagatgg
cactggccacagccactaagctagggtatgcctgttcacttcgaacttgt
tcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_96339419_96340545
seq2: B6Ng01-146O11.b_46_1159

seq1  GAATTCAGGACATCAGACTTCATGGCAAATTCCTTCACCTGCTGAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACATCAGACTTCATGGCAAATTCCTTCACCTGCTGAGCCAC  50

seq1  CTCACTGGACCCACAGCTACCATCAAAGAACCCTCAGTAGACAAGTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGACCCACAGCTACCATCAAAGAACCCTCAGTAGACAAGTGCAT  100

seq1  ATATTTATAAAGCAGTCAGTTCCTGATGAAAACTGGAAGTGATCATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAAAGCAGTCAGTTCCTGATGAAAACTGGAAGTGATCATAAAT  150

seq1  GTGTGCCAATAGTTTTTTTTTCCTGAAAACATATTGTGAAAAATAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAATAGTTTTTTTTTCCTGAAAACATATTGTGAAAAATAGATAA  200

seq1  GGCAGTAGTGACAAATCGAATTAAGTTCTAGAATGTTCTCATGACACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAGTGACAAATCGAATTAAGTTCTAGAATGTTCTCATGACACATC  250

seq1  TGTCACACTTAAAATGACATGGTGGTCAGTGAATGTTAGATGTTACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACTTAAAATGACATGGTGGTCAGTGAATGTTAGATGTTACAATG  300

seq1  CATCACTGGCCATTTCTCTGTGGTTTATAAACAAAGACAGATGTTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGCCATTTCTCTGTGGTTTATAAACAAAGACAGATGTTTTCTC  350

seq1  TAAACACCTTGCAAAGAAGCTTACCAACAATAAATGAATGTGAATTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCTTGCAAAGAAGCTTACCAACAATAAATGAATGTGAATTTTTG  400

seq1  CACCTCAAGGGGCATTTTTAATATATGAGGAACAAACAAAATTTGGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAAGGGGCATTTTTAATATATGAGGAACAAACAAAATTTGGGATA  450

seq1  GCATTGTGCTTCCGGTATGAGGGCCCACGCTTTTATGAACCATCACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGCTTCCGGTATGAGGGCCCACGCTTTTATGAACCATCACAGAA  500

seq1  ATCAAACGTCAGTTCCATTGTTTTCTGTCACCTGAGTATTAATATCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACGTCAGTTCCATTGTTTTCTGTCACCTGAGTATTAATATCAGTC  550

seq1  TTTTGTGGTATGTGACTGAGTCCCAGATCGTCAAGGACTGCATACATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTATGTGACTGAGTCCCAGATCGTCAAGGACTGCATACATGCT  600

seq1  TGTCACAGCAGAAGCACAGGGGCAGCTAAGACCCAGATCTCCTAAGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGCAGAAGCACAGGGGCAGCTAAGACCCAGATCTCCTAAGCATC  650

seq1  CCCAGAGGGCAAAATCGAAAGCTGTATAAAACAAATGGAAAATGAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGCAAAATCGAAAGCTGTATAAAACAAATGGAAAATGAGAATA  700

seq1  ATACTTCTTTGTTTGCTATTAGCTACTTCCAGAACAGAAAGGTACGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTTTGTTTGCTATTAGCTACTTCCAGAACAGAAAGGTACGCTAG  750

seq1  TGAAAATGCCTTCATTGGAGAGACAGTCTGCAGCAACATGCTCCTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGCCTTCATTGGAGAGACAGTCTGCAGCAACATGCTCCTTTAAA  800

seq1  TACAAACACTAAATCTATGCCCTGAGAATGACAAAAACGGCTTCTTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACTAAATCTATGCCCTGAGAATGACAAAAACGGCTTCTTATAC  850

seq1  GTGCCTGACCAGAACTCAACAAATGGCAGAAAAAAATAAGAAATACAAAC  900
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GTGCCTGACCAGAACTCAACAAATGGCAG-AAAAAATAAG-AATACAAAC  898

seq1  AGACAGAGGACAGAGACAGAGACACAGACACAGACACACACAGACAGACA  950
      |||||||||||||||||  ||||||||||      || | ||||||||||
seq2  AGACAGAGGACAGAGAC-TAGACACAGAC----CGACCCTCAGACAGACA  943

seq1  CACACACACAGTGTGTCCTCATATGATTTACCACTTGTGTATTGTAGCAC  1000
      | ||| |||||||||| ||||||||| |||||||||||||||||||||||
seq2  C-CAC-CACAGTGTGT-CTCATATGA-TTACCACTTGTGTATTGTAGCAC  989

seq1  AATTCTACATAAT-GTGTGGATGAGGTGC-TATGCCAAGTCTAAGCCTCT  1048
       ||||||||| || |||||||||||  || |||||||||| | |||  ||
seq2  -ATTCTACATTATGGTGTGGATGAGTGGCTTATGCCAAGT-TTAGCTCCT  1037

seq1  CAGGCTCCACATCTAAGCAAACTGCTGCCCTCCCTG-CTGCCTCCACAGG  1097
      || |||||||||||||||||||||||| |||||||| ||| |||||||||
seq2  CAAGCTCCACATCTAAGCAAACTGCTG-CCTCCCTGTCTG-CTCCACAGG  1085

seq1  GGAAGGTAGGAAGGATTCCAGCAAGTAGTC  1127
      || | | |||||||||| ||||| ||||||
seq2  GGGAAGGAGGAAGGATT-CAGCAGGTAGTC  1114

seq1: chr7_96477410_96477936
seq2: B6Ng01-146O11.g_549_1071 (reverse)

seq1  GGAACAAGTCAGAAGTGAACAGGCATACCACTAGCTAAGTGGCATGTGGC  50
      |||||||||  |||||||||||||||||| |||||| |||||| ||||||
seq2  GGAACAAGTTCGAAGTGAACAGGCATACC-CTAGCTTAGTGGC-TGTGGC  48

seq1  CAGGTGCCATCTTGGAGGGAGTCAATTGTTTAAAATTGAGTATCACTGTG  100
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CA-GTGCCATCTTGGAGGGAGTCAA-TGTTTAAAATTGAGTATCACTGTG  96

seq1  TAACTCTAAACAAGCAAGTGTATGACAAGAACTTCAAGTCTCTGAAGAAA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACTCTAAACAAGCAAGTGTATGACAAGAACTTCAAGTCTCTGAAGAAA  145

seq1  GAAACTGAAGAAGATATCAAAAGATGGAACAATCTCCCGCCCTCGTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAGAAGATATCAAAAGATGGAACAATCTCCCGCCCTCGTGGAT  195

seq1  CAGCAGGATTAACATAGTAAAAATGACCATCTTAGCAAAAGC-AATCTAC  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGCAGGATTAACATAGTAAAAATGACCATCTTAGCAAAAGCAAATCTAC  245

seq1  AGATTCAATGCAATTCTCATCAAATTCCAACTCACTTTTTTATAGACTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGCAATTCTCATCAAATTCCAACTCACTTTTTTATAGACTTT  295

seq1  AAAATAGCAATTCACAACTTCATATGGAAAAACAAAAAAACCCAGGATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAATTCACAACTTCATATGGAAAAACAAAAAAACCCAGGATAG  345

seq1  TAAAACAATCCTGTACAATAAAAGAACTTCTGGAGGTATTACCATTCCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATCCTGTACAATAAAAGAACTTCTGGAGGTATTACCATTCCTA  395

seq1  ATTTCAAGCTGTACTACAGAGTAAAAGTAATTTTAAAAACAAAAATAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGCTGTACTACAGAGTAAAAGTAATTTTAAAAACAAAAATAACC  445

seq1  CATGGTATTGGCATAAAAGCAGACAGACTGATCAATGGAATTGAATTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATTGGCATAAAAGCAGACAGACTGATCAATGGAATTGAATTGAA  495

seq1  GATCCATAAATAAAGTCACCTACAGACA  527
      ||||||||||||||||||||||||||||
seq2  GATCCATAAATAAAGTCACCTACAGACA  523