BAC Information

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BAC

Clone NameB6Ng01-147F09
Chromosome7 (Build37)
Map Location 17,399,013 - 17,544,412
singlet/doubletdoublet
Overlap geneFkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128
Upstream geneEG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5
Downstream gene0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147F09.bB6Ng01-147F09.g
ACCDH944247DH944248
length1,029702
definitionDH944247|Mus musculus domesticus DNA, BAC clone: B6Ng01-147F09, 5' end.DH944248|Mus musculus domesticus DNA, BAC clone: B6Ng01-147F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,399,013 - 17,400,050)(17,543,704 - 17,544,412)
sequence
gaattccagttctagggactctggtgccctttaactggcctctgtgggca
ttgtgggcaccaggcatgcacatggtgtgtagacatgcatgcaggtaaaa
cactcatactcttaatgaattgaggcactgagaggtgaaggcacttgctt
aaagccatacatctgaaaagagggacgcgggagttgatgcaagaagaagc
tggttactaatcctgcttcaaaccagtaagccaatggtacttgccttaat
cccagcattccagaggcagaaacaggggcatctccatgactccgacacca
gcctggtgtacagagaccttgtctcacaaccaaaaaactgttttgttttg
ttgagagggggtctcactaagtattgaagtctggctttgaactaagaacc
tcttgccttctgactgctgggattacaggcgtataccactgtccacccag
ctaattcttgtttgcaatcacatatcccaactcttacactacagctaagc
tgatgggtggtcttaaagctgaatatggcatgtgactttccagccgaaag
tcaccttatcaacaagtaggtactttgtgccagggtgttttgggtttgtt
tgtttttgagacagggtctcaatgtgggccaggttgaccttgcactaggt
atgtagctgagggatgacactgctacaaggcaaaggctgggctgggatca
caggcacacactaccattatccactagcgctctaccaaccgagctgtctc
ctcagctccaaccccagcctctgtgttctgcagatctgagaagacaggca
caccttagtggtaaggtaggagaccagccgggagcaggagtgagtaacat
tggggccttgcctaggaaaagtggtcagggaagagagtgaatctgagctc
atactagctttccatttcttccccacacatatatacgctgagtctgatgt
taaatgcttgtatcccagcatttgggagtgaagcaggagatgaaaatcaa
gtcatccttgacactgcttgagttgaggc
gaattccttatacaaagcaaatgtgtatcgtctgtacagctagagttcca
tggtcctcacgtccctttgtctgtattctctaacatggaaaaggtggatt
gggagcgatggggaggagagatgcctcacagggaccccgtggcttggagg
atgtatctatgggcaaggtcaagtgcagccaggaggaagggcagtgcagg
aagtcatctccctagataagtgggatcttgcagttctgtgtgctcttcaa
ggccatctgctgcaggatggatgtggctaaaccatggggacctctgggag
ccctgaacctccttcttgacttcacaactcctgggagggtgtgtggtcac
tccatggtatgtgaggtagtagcagggtggcattattcaaatcatctttc
accttcagattcattctcctatcaacaacaatctcaaaaaaaaaaaaaaa
gatggaaacaaatccttaggggtttgtttgtttgtttgttttaatgaatg
gcggctcttttccttcgtgacttagtaaaatagatgaccctttctataat
aacaaagccactagccttgggagaagagtaagttgggtcatgttgcctgg
gtgacttgcccaggaaacgggtccgtgaacacagcactagtgaagaaagg
gaagcttttccaggggattttttgtggtgtggaatggtgatgattggtga
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17399013_17400050
seq2: B6Ng01-147F09.b_50_1078

seq1  GAATTCCAGTTCTAGGGACTCTGGTGCCCTTT-TCTGGCCTCTGTGGGCA  49
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GAATTCCAGTTCTAGGGACTCTGGTGCCCTTTAACTGGCCTCTGTGGGCA  50

seq1  TTGTGGGCACCAGGCATGCACATGGTGTGTAGACATGCATGCAGGTAAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCACCAGGCATGCACATGGTGTGTAGACATGCATGCAGGTAAAA  100

seq1  CACTCATACTCTTAATGAATTGAGGCACTGAGAGGTGAAGGCACTTGCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATACTCTTAATGAATTGAGGCACTGAGAGGTGAAGGCACTTGCTT  150

seq1  AAAGCCATACATCTGAAAAGAGGGACGCGGGAGTTGATGCAAGAAGAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATACATCTGAAAAGAGGGACGCGGGAGTTGATGCAAGAAGAAGC  200

seq1  TGGTTACTAATCCTGCTTCAAACCAGTAAGCCAATGGTACTTGCCTTAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTAATCCTGCTTCAAACCAGTAAGCCAATGGTACTTGCCTTAAT  250

seq1  CCCAGCATTCCAGAGGCAGAAACAGGGGCATCTCCATGACTCCGACACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATTCCAGAGGCAGAAACAGGGGCATCTCCATGACTCCGACACCA  300

seq1  GCCTGGTGTACAGAGACCTTGTCTCACAACCAAAAAACTGTTTTGTTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGTACAGAGACCTTGTCTCACAACCAAAAAACTGTTTTGTTTTG  350

seq1  TTGAGAGGGGGTCTCACTAAGTATTGAAGTCTGGCTTTGAACTAAGAACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGGGGTCTCACTAAGTATTGAAGTCTGGCTTTGAACTAAGAACC  400

seq1  TCTTGCCTTCTGACTGCTGGGATTACAGGCGTATACCACTGTCCACCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTTCTGACTGCTGGGATTACAGGCGTATACCACTGTCCACCCAG  450

seq1  CTAATTCTTGTTTGCAATCACATATCCCAACTCTTACACTACAGCTAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTTGTTTGCAATCACATATCCCAACTCTTACACTACAGCTAAGC  500

seq1  TGATGGGTGGTCTTAAAGCTGAATATGGCATGTGACTTTCCAGCCGAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTGGTCTTAAAGCTGAATATGGCATGTGACTTTCCAGCCGAAAG  550

seq1  TCACCTTATCAACAAGTAGGTACTTTGTGCCAGGGTGTTTTGGGTTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTATCAACAAGTAGGTACTTTGTGCCAGGGTGTTTTGGGTTTGTT  600

seq1  TGTTTTTGAGACAGGGTCTCAATGTGGGCCAGGTTGACCTTGCACTAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGAGACAGGGTCTCAATGTGGGCCAGGTTGACCTTGCACTAGGT  650

seq1  ATGTAGCTGAGGGATGACACTGCTACAAGGCAAAGGCTGGGCTGGGATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGAGGGATGACACTGCTACAAGGCAAAGGCTGGGCTGGGATCA  700

seq1  CAGGCACACACTACCATTATCCACTAGCGCTCTACCAACCGAGCTGTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACACTACCATTATCCACTAGCGCTCTACCAACCGAGCTGTCTC  750

seq1  CTCAGCTCCAACCCCAGCCTCTGTGTTCTGCAGATCTGAGAAGACAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCCAACCCCAGCCTCTGTGTTCTGCAGATCTGAGAAGACAGGCA  800

seq1  CACCTTAGTGGTAAGGTAGGAGACCAGCCGGGAGCAGGAGTGAGTAACA-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCTTAGTGGTAAGGTAGGAGACCAGCCGGGAGCAGGAGTGAGTAACAT  850

seq1  TGGGGCCTTGCCTAGGAAAAGTGGTCAGGGAAGAGAGTGAATCTGAGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTTGCCTAGGAAAAGTGGTCAGGGAAGAGAGTGAATCTGAGCTC  900

seq1  ATACTAGCTTTCCATTTCTTCCCCCACACATTATATACGCTGAGTCTGAT  948
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  ATACTAGCTTTCCATTTCTT-CCCCACACA-TATATACGCTGAGTCTGAT  948

seq1  GTTAAATGCTTGTATTCCCAGCACTTGGGAGGTGGAGGCAGGAGGATTGA  998
      |||||||||||||| |||||||| |||||||   || |||||||   |||
seq2  GTTAAATGCTTGTA-TCCCAGCATTTGGGAG--TGAAGCAGGAG--ATGA  993

seq1  AAATTCAAGGTCATCCTTGACCACTGCTTGAGTTTGAGGC  1038
      ||| |||| ||||||||||| ||||||||||| |||||||
seq2  AAA-TCAA-GTCATCCTTGA-CACTGCTTGAG-TTGAGGC  1029

seq1: chr7_17543704_17544412
seq2: B6Ng01-147F09.g_70_771 (reverse)

seq1  CATCACCAACATCACC-ATCATCACCATTCCACACCACAAAAAGTCCCCT  49
               ||||||| |||||||||||||||||||||||||| ||||||
seq2  ---------CATCACCAATCATCACCATTCCACACCACAAAAAATCCCCT  41

seq1  GGAAAAGCTTCCC-TTCTTCACTAGTGCTGTGTTCACGGACCCGTTTCCT  98
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCTTCCCTTTCTTCACTAGTGCTGTGTTCACGGACCCGTTTCCT  91

seq1  GGGCAAGTCACCCAGGCAACATGACCCAACTTACTCTTCTCCCAAGGCTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTCACCCAGGCAACATGACCCAACTTACTCTTCTCCCAAGGCTA  141

seq1  GTGGCTTTGTTATTATAGAAAGGGTCATCTATTTTACTAAGTCACGAAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTGTTATTATAGAAAGGGTCATCTATTTTACTAAGTCACGAAGG  191

seq1  AAAAGAGCCGCCATTCATTAAAACAAACAAACAAACAAACCCCTAAGGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCCGCCATTCATTAAAACAAACAAACAAACAAACCCCTAAGGAT  241

seq1  TTGTTTCCATCTTTTTTTTTTTTTTTGAGATTGTTGTTGATAGGAGAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCATCTTTTTTTTTTTTTTTGAGATTGTTGTTGATAGGAGAATG  291

seq1  AATCTGAAGGTGAAAGATGATTTGAATAATGCCACCCTGCTACTACCTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAGGTGAAAGATGATTTGAATAATGCCACCCTGCTACTACCTCA  341

seq1  CATACCATGGAGTGACCACACACCCTCCCAGGAGTTGTGAAGTCAAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATGGAGTGACCACACACCCTCCCAGGAGTTGTGAAGTCAAGAAG  391

seq1  GAGGTTCAGGGCTCCCAGAGGTCCCCATGGTTTAGCCACATCCATCCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCAGGGCTCCCAGAGGTCCCCATGGTTTAGCCACATCCATCCTGC  441

seq1  AGCAGATGGCCTTGAAGAGCACACAGAACTGCAAGATCCCACTTATCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGCCTTGAAGAGCACACAGAACTGCAAGATCCCACTTATCTAG  491

seq1  GGAGATGACTTCCTGCACTGCCCTTCCTCCTGGCTGCACTTGACCTTGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACTTCCTGCACTGCCCTTCCTCCTGGCTGCACTTGACCTTGCC  541

seq1  CATAGATACATCCTCCAAGCCACGGGGTCCCTGTGAGGCATCTCTCCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATACATCCTCCAAGCCACGGGGTCCCTGTGAGGCATCTCTCCTCC  591

seq1  CCATCGCTCCCAATCCACCTTTTCCATGTTAGAGAATACAGACAAAGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGCTCCCAATCCACCTTTTCCATGTTAGAGAATACAGACAAAGGGA  641

seq1  CGTGAGGACCATGGAACTCTAGCTGTACAGACGATACACATTTGCTTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGACCATGGAACTCTAGCTGTACAGACGATACACATTTGCTTTGT  691

seq1  ATAAGGAATTC  709
      |||||||||||
seq2  ATAAGGAATTC  702