BAC Information

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BAC

Clone NameB6Ng01-148E11
Chromosome7 (Build37)
Map Location 9,448,884 - 9,520,597
singlet/doubletdoublet
Overlap geneLOC100042803
Upstream geneLOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790
Downstream geneLOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148E11.bB6Ng01-148E11.g
ACCDH944935DH944936
length9991,105
definitionDH944935|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E11, 5' end.DH944936|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,448,884 - 9,449,885)(9,519,465 - 9,520,597)
sequence
gaattcaaattctaagcatcgtggttcctaaatagacactaaggattttc
tgcttacctaacttctaggccctgggacaattgatcctctttttgcttaa
ggtcccactgaccattgtgtttggcacagagcagcaaaaagaaagtggac
agatggactctgtcaaagcttgatgttgaacatagagagtctctcctttc
aaacagctaaattacatgaggctttctgtcttacttagggtttccattcc
tccgaagagacatcatgacaaagggaagtcttataaatagaaaacaatta
atcctggctggcttacactttcagaggttcagtccattatcattatggtg
gggagcatggcagcatcctggcagtcatggtgctataataagatctgaga
gctccacattttgatgcaaaggcagcagcaggatagtctctttttcaggc
agctaggaagagggtctcttctgcactttagtgtagattgagcacaggct
ctcaatgccagcctccacattgacacatttttgccaacaaggccacacct
attctaacaactacatgactcagaatagtgtcactcagtgtggactaagc
attcaaacacataagtatatgggggctcaaaccttttcaaaccattatag
tgtctttgcatttaaaggaacctatgataaaacaaggctctgaataacca
aagaccacccaggccctccctcatatgtgcaggctgatatagctgttata
ttttcctcaatcctcagtgaggcactgtgtgctttcaaacaaggcaacaa
actcttccacgctatcctatggaatatggggataaaaaatgttacccctc
ctcctaaagaatattaatgtgtcaaactcattcttacctgtcatgaactt
ggtaagtgagagaaaagataaataaaaagaaaagggcatgactgctgtta
gatatgtggagggaaagttttattgtagatatgagggaagagaatagcc
gaattctttgccagagatctaatgccaatttaaattctaactctaaatag
ttatacactcacaggtagtcaaatgtcgaactccacatactggattggag
tttttcatcctttctcgttgctaaaatgtcatgagtagccaggctaagaa
tggtatttcaagcctttgcaaaaaaaaaaaaaaaaactccagatatttaa
aagctgggttatagagaaatgttgataaaattcatttctgttccatcaca
gtttatctctgatgacaaaatttatatcacattattatttaccatgtttg
taaataataatgctgttatttcagtttaccaatgataatgtaaaattgtg
accaagatgaagatcacacctatctggggacagaaatattaagctctata
tcttggaacagcacaaacaaatctctgcttgctgagcttggtataaataa
tgaaacactctgactgacagtcagtcaaggctgtaagattttttcttcca
ccatgcccgaattaattctacattgccttctctattcctccatgaaagta
tctgtcaacttctggtggtagtccctagttgaaagcctatcatatttctg
aatagtaagtatcctggaacttcctagattgacataagcataagtccaac
cacatccattaactttcttaatagctatcaaagtcccccaaagagacatg
atgttaagaattcctggacgatgataactcacacgtggagataaaaagct
gtccaggtacttccagaaacttaaagatacctcccaatgggttcctgtaa
gcagaaggaacacatagtctcttcattacagaaatattagggataggact
ttttgtttttttatgaaataaatatggtgtaggtattacagttttcccat
cacaacggcccaaagtgtatcttatgatcaaagacatatttgtaaaagat
caggattcctgttgattcatccattgaaaagaccaatgccaaagcattat
ttgtggttttttagtgtttttctgtaaagagtacattgtttattatggac
gaatgaattatacatgaattaagtactccatggaagttctattctatact
ggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9448884_9449885
seq2: B6Ng01-148E11.b_43_1041

seq1  GAATTCAAATTCTAAGCATCGTGGTTCCTAAATAGACACTAAGGATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTCTAAGCATCGTGGTTCCTAAATAGACACTAAGGATTTTC  50

seq1  TGCTTACCTAACTTCTAGGCCCTGGGACAATTGATCCTCTTTTTGCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACCTAACTTCTAGGCCCTGGGACAATTGATCCTCTTTTTGCTTAA  100

seq1  GGTCCCACTGACCATTGTGTTTGGCACAGAGCAGCAAAAAGAAAGTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACTGACCATTGTGTTTGGCACAGAGCAGCAAAAAGAAAGTGGAC  150

seq1  AGATGGACTCTGTCAAAGCTTGATGTTGAACATAGAGAGTCTCTCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTCTGTCAAAGCTTGATGTTGAACATAGAGAGTCTCTCCTTTC  200

seq1  AAACAGCTAAATTACATGAGGCTTTCTGTCTTACTTAGGGTTTCCATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTAAATTACATGAGGCTTTCTGTCTTACTTAGGGTTTCCATTCC  250

seq1  TCCGAAGAGACATCATGACAAAGGGAAGTCTTATAAATAGAAAACAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAGAGACATCATGACAAAGGGAAGTCTTATAAATAGAAAACAATTA  300

seq1  ATCCTGGCTGGCTTACACTTTCAGAGGTTCAGTCCATTATCATTATGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCTGGCTTACACTTTCAGAGGTTCAGTCCATTATCATTATGGTG  350

seq1  GGGAGCATGGCAGCATCCAGGCAGTCATGGTGCTATAATAAGATCTGAGA  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGAGCATGGCAGCATCCTGGCAGTCATGGTGCTATAATAAGATCTGAGA  400

seq1  GCTCCACATTTTGATGCAAAGGCAGCAGCAGGATAGTCTCTTTTTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACATTTTGATGCAAAGGCAGCAGCAGGATAGTCTCTTTTTCAGGC  450

seq1  AGCTAGGAAGAGGGTCTCTTCTGCACTTTAGTGTAGATTGAGCACAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGAAGAGGGTCTCTTCTGCACTTTAGTGTAGATTGAGCACAGGCT  500

seq1  CTCAATGCCAGCCTCCACAGTGACACATTTTTGCCAACAAGGCCACACCT  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCAATGCCAGCCTCCACATTGACACATTTTTGCCAACAAGGCCACACCT  550

seq1  ATTCTAACAACTACATGACTCAGAATAGTGTCACTCAGTGTGGACTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACAACTACATGACTCAGAATAGTGTCACTCAGTGTGGACTAAGC  600

seq1  ATTCAAACACATAAGTATATGGGGGCTCAAACCTTTTCAAACCATTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACACATAAGTATATGGGGGCTCAAACCTTTTCAAACCATTATAG  650

seq1  TGTCTTTGCATTTAAAGGAACCTATGATAAAACAAGGCTCTGAATAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGCATTTAAAGGAACCTATGATAAAACAAGGCTCTGAATAACCA  700

seq1  AAGACCACCCAGGCCCTCCCTCATATGTGCAGGCTGATATAGCTGTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACCCAGGCCCTCCCTCATATGTGCAGGCTGATATAGCTGTTATA  750

seq1  TTTTCCTCAATCCTCAGTGAGGCACTGTGTGCTTTCAAACAAGGCAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCAATCCTCAGTGAGGCACTGTGTGCTTTCAAACAAGGCAACAA  800

seq1  ACTCTTCCACGCTATCCTATGGAATATGGGGATTAAAAAATGTTACCCCT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTCTTCCACGCTATCCTATGGAATATGGGGA-TAAAAAATGTTACCCCT  849

seq1  CCTCCTAAAGAAATATTAATGTGTCAAACTCATTCTTACCTGTCATGAAC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAAAG-AATATTAATGTGTCAAACTCATTCTTACCTGTCATGAAC  898

seq1  TTGGTAAGTGAGAGAAAAAGATAAATAAAAAGAAAAGGGCATGACTGCTG  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGTGAGAG-AAAAGATAAATAAAAAGAAAAGGGCATGACTGCTG  947

seq1  TTAGATATGGTGGAGGGAAAGTTTTATTGTAGATATGAGGG-AGAGAATA  999
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TTAGATAT-GTGGAGGGAAAGTTTTATTGTAGATATGAGGGAAGAGAATA  996

seq1  GCC  1002
      |||
seq2  GCC  999

seq1: chr7_9519465_9520597
seq2: B6Ng01-148E11.g_69_1173 (reverse)

seq1  TTTCCAGTATAGCATAGAACTTCCATTGAGTACTAATATTCATGTATAA-  49
      || ||||||||| ||||||||||||| ||||||| | |||||||||||| 
seq2  TTACCAGTATAGAATAGAACTTCCATGGAGTACTTA-ATTCATGTATAAT  49

seq1  TCATCTGTCCATAATAAACACTGTACTCTTTTACAGAAAAACAACTAAAA  99
      ||||  |||||||||||||| ||||||| ||||||||||||||   ||||
seq2  TCATTCGTCCATAATAAACAATGTACTC-TTTACAGAAAAACACTAAAAA  98

seq1  ACCACAAAT-ATGCTTTGGCATTGGTCTTTTCAATGGATGAAATCAACAG  148
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  ACCACAAATAATGCTTTGGCATTGGTCTTTTCAATGGATG-AATCAACAG  147

seq1  GAATCCTGATCTTTTACCAAATATGTCTTTGATCATAAGATACACTTTGG  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATCCTGATCTTTTA-CAAATATGTCTTTGATCATAAGATACACTTTGG  196

seq1  GCCGTTGTGATGGGAAAACTGTAATACCTACACCATATTTATTACATAAA  248
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCGTTGTGATGGGAAAACTGTAATACCTACACCATATTTATTTCATAAA  246

seq1  AAAAAAAAACAAAGCCCTATCCCAAACTATTTCTGTAATGAAGAGAGTAT  298
      |||| ||   |||| |||||||| || ||||||||||||||||||| |||
seq2  AAAACAA---AAAGTCCTATCCCTAA-TATTTCTGTAATGAAGAGACTAT  292

seq1  GTGTTCGTTTCTGCTTACAGGACCCAATTGGGAGGTATCTTTAAATTTCT  348
      ||||||  |||||||||||||| || |||||||||||||||||| |||||
seq2  GTGTTC-CTTCTGCTTACAGGAACCCATTGGGAGGTATCTTTAAGTTTCT  341

seq1  GGATGTACCTGGACAGCTTCTTATCTCCACGTGTGAG---TCATCGTCCA  395
      ||| ||||||||||||||| |||||||||||||||||   ||||||||||
seq2  GGAAGTACCTGGACAGCTTTTTATCTCCACGTGTGAGTTATCATCGTCCA  391

seq1  GGAATTCTTAACATCATGTCTCTTTGGGGGACTTTGATAGCTATTAAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTAACATCATGTCTCTTTGGGGGACTTTGATAGCTATTAAGAA  441

seq1  AGTTAATGGATGTGGTTGGACTTATGCTTATGTCAATCTAGGAAGTTCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGGATGTGGTTGGACTTATGCTTATGTCAATCTAGGAAGTTCCA  491

seq1  GGATACTTACTATTCAGAAATATGATAGGCTTTCAACTAGGGACTACCAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTACTATTCAGAAATATGATAGGCTTTCAACTAGGGACTACCAC  541

seq1  CAGAAGTTGACAGATACTTTCATGGAGGAATAGAGAAGGCAATGTAGAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTGACAGATACTTTCATGGAGGAATAGAGAAGGCAATGTAGAAT  591

seq1  TAATTCGGGCATGGTGGAAGAAAAAATCTTACAGCCTTGACTGACTGTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCGGGCATGGTGGAAGAAAAAATCTTACAGCCTTGACTGACTGTCA  641

seq1  GTCAGAGTGTTTCATTATTTATACCAAGCTCAGCAAGCAGAGATTTGTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTGTTTCATTATTTATACCAAGCTCAGCAAGCAGAGATTTGTTT  691

seq1  GTGCTGTTCCAAGATATAGAGCTTAATATTTCTGTCCCCAGATAGGTGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCCAAGATATAGAGCTTAATATTTCTGTCCCCAGATAGGTGTG  741

seq1  ATCTTCATCTTGGTCACAATTTTACATTATCATTGGTAAACTGAAATAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATCTTGGTCACAATTTTACATTATCATTGGTAAACTGAAATAAC  791

seq1  AGCATTATTATTTACAAACATGGTAAATAATAATGTGATATAAATTTTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTATTTACAAACATGGTAAATAATAATGTGATATAAATTTTGT  841

seq1  CATCAGAGATAAACTGTGATGGAACAGAAATGAATTTTATCAACATTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGATAAACTGTGATGGAACAGAAATGAATTTTATCAACATTTCT  891

seq1  CTATAACCCAGCTTTTAAATATCTGGAGTTTTTTTTTTTTTTTTTTTTTT  945
      ||||||||||||||||||||||||||||                      
seq2  CTATAACCCAGCTTTTAAATATCTGGAG----------------------  919

seq1  TTTTTTTTTTTTTTTTTTTGCAAAGGCTTGAAATACCATTCTTAGCCTGG  995
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TTTTTTTTTTTTTTTTTGCAAAGGCTTGAAATACCATTCTTAGCCTGG  967

seq1  CTACTCATGACATTTTAGCAACGAGAAAGGATGAAAAACTCCAATCCAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATGACATTTTAGCAACGAGAAAGGATGAAAAACTCCAATCCAGT  1017

seq1  ATGTGGAGTTCGACATTTGACTACCTGTGAGTGTATAACTATTTAGAGTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGTGGAGTTCGACATTTGACTACCTGTGAGTGTATAACTATTTAGAGTT  1067

seq1  AGAATTTAAATTGGCATTAGATCTCTGGCAAAGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAAATTGGCATTAGATCTCTGGCAAAGAATTC  1105