BAC Information

Click to search

BAC

Clone NameB6Ng01-148E12
ChromosomeY (Build37)7 (Build37)
Map Location 1,120,555 - 1,120,78410,926,457 - 10,926,871
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148E12.bB6Ng01-148E12.g
ACCDH944937DH944938
length734409
definitionDH944937|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E12, 5' end.DH944938|Mus musculus domesticus DNA, BAC clone: B6Ng01-148E12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,555 - 1,120,784)(10,926,457 - 10,926,871)
sequence
gaattctctggaccatccttgcaagacaggctttattttattctattttc
cttccggttttctgtgagtacgcttttatacttacctagattttcttttt
ttttttttttttttcatttatttatttatttattacgtattttcctcaat
tacatttccaatgctatcccaaaagtcccccataccctccccccccactc
ccctacccacccactcccattttttttggccctggcgttcccctgtactg
gggcatataaagtttgcaagtccaatgggcctctctttccagtgatggcc
gactaggccatcttttttttttttttttttttcttttttttttttttttt
ccattttttattaggtatttccctcatttacatttgcaatgctataccaa
aagtcccccatagccacccaccccctctcccctacccacccactcccctt
ttatggccctggcgttcccctgtactggggcatataaagtttgcgtgtcc
aatgggcctctctttccagtgatggccgactaggccatcttttgatgcat
atgcagctagagtcaaaagctccggggtactggttagttcataatgttgt
tccacctatagggttgcagatccctttagcttctttggtactttctctag
ctccttcattgggggccatgtgatccatccaatagccgactgtgagcatc
cacttctatgtttgctaggcccaggcatactctg
aggtgaagggcttagacacaaatactaggtccatttctgcctacttctct
ggggttctcttaattctccatgtcacaaccataaatataaacataaatgc
atccataccctccatactttcaggtgtccaacccttatactgcttacaca
ttattattttctctttgtagctgggagggctcatgagctcctcctacaag
gtctccagcccaggtaacaatctcttgtggttgctctacttacttcaaag
tcagaaaaatccagataaagtcagtatgcttgtcgggagatacaggtaaa
ggaaattggaggatttggataagtaatgatttttgttttccttaaaaaaa
tcagaaagaaggaagggaaggaaaaggaagggaagggaagggaagggaag
ggaagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120555_1120784
seq2: B6Ng01-148E12.b_133_358

seq1  AGATTTTGTCATCTTTTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTTA  50
      ||||||  || | |||||||||||||||| |||| ||| |   || ||||
seq2  AGATTT--TCTTTTTTTTTTTTTTTTTTTCATTTATTTAT---TTATTTA  45

seq1  TTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA  100
      ||| ||||||  |||| |||||||||||||||||| ||||||||||||||
seq2  TTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCA  95

seq1  TATCCACCCACCCCCACTCCCCTGCCCACCCACTCCC--CCTTTTTGGCC  148
      || || ||| ||||||||||||| |||||||||||||    |||||||||
seq2  TACCCTCCC-CCCCCACTCCCCTACCCACCCACTCCCATTTTTTTTGGCC  144

seq1  CTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC  198
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC  194

seq1  TCTCTTTCCAGTGATGGCCGACTAGGCCATCT  230
      ||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCAGTGATGGCCGACTAGGCCATCT  226

seq1: chr7_10926457_10926871
seq2: B6Ng01-148E12.g_68_482

seq1  GAATTCAGGTGAAGGGCTTAGACACAAATACTAGGTCCATTTCTGCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGAAGGGCTTAGACACAAATACTAGGTCCATTTCTGCCTAC  50

seq1  TTCTCTGGGGTTCTCTTAATTCTCCATGTCACAACCATAAATATAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGGTTCTCTTAATTCTCCATGTCACAACCATAAATATAAACAT  100

seq1  AAATGCATCCATACCCTCCATACTTTCAGGTGTCCAACCCTTATACTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCCATACCCTCCATACTTTCAGGTGTCCAACCCTTATACTGCT  150

seq1  TACACATTATTATTTTCTCTTTGTAGCTGGGAGGGCTCATGAGCTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTATTATTTTCTCTTTGTAGCTGGGAGGGCTCATGAGCTCCTCC  200

seq1  TACAAGGTCTCCAGCCCAGGTAACAATCTCTTGTGGTTGCTCTACTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTCTCCAGCCCAGGTAACAATCTCTTGTGGTTGCTCTACTTACT  250

seq1  TCAAAGTCAGAAAAATCCAGATAAAGTCAGTATGCTTGTCGGGAGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAGAAAAATCCAGATAAAGTCAGTATGCTTGTCGGGAGATACA  300

seq1  GGTAAAGGAAATTGGAGGATTTGGATAAGTAATGATTTTTGTTTTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGAAATTGGAGGATTTGGATAAGTAATGATTTTTGTTTTCCTTA  350

seq1  AAAAAATCAGAAAGAAGGAAGGGAAGGAAAAGGAAGGGAAGGGAAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGAAAGAAGGAAGGGAAGGAAAAGGAAGGGAAGGGAAGGGAA  400

seq1  GGGAAGGGAAGGGAA  415
      |||||||||||||||
seq2  GGGAAGGGAAGGGAA  415