BAC Information

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BAC

Clone NameB6Ng01-149C07
Chromosome7 (Build37)
Map Location 11,772,993 - 11,774,007
singlet/doubletsinglet
Overlap geneLOC628737
Upstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d
Downstream geneLOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149C07.bB6Ng01-149C07.g
ACCDH945561DH945562
length1,2541,002
definitionDH945561|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C07, 5' end.DH945562|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacataaacatgataaaagcaatgtacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacatggctgcccattttctccctacctattcaacaatg
tacttgaagtcctagccagaacatttcgacaacgaaaggagatcaagagg
atacaaattagaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaacctaaaaattccaccagagaactcctaaacc
tgataaacagcttcagtgaaggagctggatataaaattaacgcaaacaag
tcaagggcctttctctacacaaaggataaacaggctgagaaagaaattag
ggaaataacacccttcataatagtcacaaataatataaaatgccttggca
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaaaatctcagaagttggaaagatctcccatg
ctcatggattggcaggatcaatatagtaaaaatggctatcttgcagagaa
caatctacagattcaatgcaatccccatcaaaatttcaactcaattcttc
aatgaattagaaagggcaatctgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctaaatgataaaagaacctttttgggaatca
ccatgccggacctaaagctgtactacagagcagttgtgataaaaactgta
tggtactggtatagctacagaaaagtagaccaatggaatagaattgaaga
cccagaaatgaactcatacacctatgttcacttatctttgacaagggagc
taaaaccatccattggaaaaaaagacagcattttcaacaaatggaggtgg
cacaactggtggttatcatttagaggatgtgaattgatccattcctatct
ccttatactaagtcaaatttatgtggatcatgaccccacataaaaccaga
gacagtgaaactatagaggagaagtaaggaaaccctcgaaattgggcaca
gggaaattcctgaatagaacaaccatggctgggctgttaggatcgagaaa
tagacaaatgacctcataaattacaaggcttccgtaggacagactgatct
agacagcatgatgacctaccttaagtgaatataggccgttacctagaact
ccag
gaattcaggtcctgaggaattccccttgcaagtgctttgccccctgactc
acctcctatagcccctctggatcttgaaccatatgaacagttgctgttta
tgaacagttctccttgcctcaggcatgcacaggagtggacccttcaggat
gtccctgtgtctcccatttccttggaagctgaaaagggaagatttccctt
cttccggtttttgtttgttttgttttttgttttttgttttttttggagac
agggtatctctgtgtagttctggctgtcctaaaactcactttgtagacca
tgctggccttgaactcagaaatctgcctgcctctgcctcccaagtgctgg
gattaaaggcatgtgccaccactgcccattttttgtcattgttttttttt
ttttttttttttttttgtgatttcccttcttctgagcctacgcacagccc
aaccttctgtgttctgttctaggaaaaaaacaatgtgtgggacttaggac
tacttgcccacggaaacgatagagcagaaaccatacaatgagatggttga
tctgtggtgcagttgggtgctctgctatgagctgctggtgaggaaaccac
cctttgagagcaacacctccagtgagacacagagatgcatgcgccaggta
tggcgtgcatgagcacacacacacacatatgcatgacatttatcaggaag
ccagacagtgatgggtcctgggtgggcctttggggactagagtgtataca
aaagattatctgctaatagcaaaaaggtggcatgaggagactcatatcac
aagggagtagattaccaaagaagataactagattctatcctctttcccct
gggctcaatagggggatttagattccctctacagagcctgcaggagtcag
gactggatctccaagctcttaggacatcctcagagggctaagcctgccca
gtcttgaagacccctgggcaagaacctctctgaagggggcttccttgcta
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11772993_11774007
seq2: B6Ng01-149C07.g_68_1069

seq1  GAATTCAGGTCCTGAGGAATTCCCCTTGCAAGTGCTTTGCCCCCTGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCTGAGGAATTCCCCTTGCAAGTGCTTTGCCCCCTGACTC  50

seq1  ACCTCCTATAGCCCCTCTGGATCTTGAACCATATGAACAGTTGCTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTATAGCCCCTCTGGATCTTGAACCATATGAACAGTTGCTGTTTA  100

seq1  TGAACAGTTCTCCTTGCCTCAGGCATGCACAGGAGTGGACCCTTCAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTTCTCCTTGCCTCAGGCATGCACAGGAGTGGACCCTTCAGGAT  150

seq1  GTCCCTGTGTCTCCCATTTCCTTGGAAGCTGAAAAGGGAAGATTTCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGTCTCCCATTTCCTTGGAAGCTGAAAAGGGAAGATTTCCCTT  200

seq1  CTTCCGGTTTTTGTTTGTTTTGTTTTTTGTTTTTTGTTTTTTTTGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGTTTTTGTTTGTTTTGTTTTTTGTTTTTTGTTTTTTTTGGAGAC  250

seq1  AGGGTATCTCTGTGTAGTTCTGGCTGTCCTAAAACTCACTTTGTAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATCTCTGTGTAGTTCTGGCTGTCCTAAAACTCACTTTGTAGACCA  300

seq1  TGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGG  350

seq1  GATTAAAGGCATGTGCCACCACTGCCCATTTTTTGTCATTGTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGTGCCACCACTGCCCATTTTTTGTCATTGTTTTTTTTT  400

seq1  TTTTTTTTTTTTTTTTGTGATTTCCCTTCTTCTGAGCCTACGCACAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGTGATTTCCCTTCTTCTGAGCCTACGCACAGCCC  450

seq1  AACCTTCTGTGTTCTGTTCTAGGAGAAAGACAATGTGTGGGACTTAGGAC  500
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  AACCTTCTGTGTTCTGTTCTAGGAAAAAAACAATGTGTGGGACTTAGGAC  500

seq1  TACTTGCCCACGGAAACGATAGAGCAGAAACCATACAATGAGATGGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCCACGGAAACGATAGAGCAGAAACCATACAATGAGATGGTTGA  550

seq1  TCTGTGGTGCAGTTGGGTGCTCTGCTATGAGCTGCTGGTGAGGAAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGTGGTGCAGTTGGGTGCTCTGCTATGAGCTGCTGGTGAGGAAACCAC  600

seq1  CCTTTGAGAGCAACACCTCCAGTGAGACACAGAGATGCATGCGCCAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGAGCAACACCTCCAGTGAGACACAGAGATGCATGCGCCAGGTA  650

seq1  TGGCGTGCATGAGCACACACACACACATATGCATGACATTTATCAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGCATGAGCACACACACACACATATGCATGACATTTATCAGGAAG  700

seq1  CCAGACAGTGATGGGTCCTGGGTGGGCCTTTGGGGACTAGAGTGTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGTGATGGGTCCTGGGTGGGCCTTTGGGGACTAGAGTGTATACA  750

seq1  AAAGATTATCTGCTAATAGCAAAAAGGGTGCCATGAGGAGACTCATATCA  800
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  AAAGATTATCTGCTAATAGCAAAAA-GGTGGCATGAGGAGACTCATATCA  799

seq1  C-AGGGAGTAGATTACCCAAAGAGAATAACTAGATTCTATTCTTCTTCCC  849
      | ||||||||||||| |||||||  ||||||||||||||| ||  |||||
seq2  CAAGGGAGTAGATTA-CCAAAGAAGATAACTAGATTCTATCCTCTTTCCC  848

seq1  CT-GGCTCATTAGGTGGATTTTAAGTTTCCTTCATCAGTGCCTGCAGGAG  898
      || |||||| |||| ||||||  || |||| ||  ||| |||||||||||
seq2  CTGGGCTCAATAGGGGGATTT--AGATTCCCTCTACAGAGCCTGCAGGAG  896

seq1  TCCAGGACTTGATCTCCAAGCTTCTTAGGTACCATCCTTCAGAGTGGCTA  948
      | ||||||| ||||||||||| |||||||   ||||| |||||| |||||
seq2  T-CAGGACTGGATCTCCAAGC-TCTTAGG--ACATCC-TCAGAG-GGCTA  940

seq1  AGCCTGGCCCAGGTCCTGAAGCACCCCTGGGTCAGGGAACACTCTCGAAG  998
      ||||| ||||| ||| ||||| ||||||||| || | | | |||| ||||
seq2  AGCCT-GCCCA-GTCTTGAAG-ACCCCTGGG-CAAGAACCTCTCT-GAAG  985

seq1  GGTGCTTCCTTGCTAGT  1015
      || ||||||||||||||
seq2  GGGGCTTCCTTGCTAGT  1002