BAC Information

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BAC

Clone NameB6Ng01-149M05
Chromosome7 (Build37)
Map Location 106,053,931 - 106,257,582
singlet/doubletdoublet
Overlap geneUvrag, EG666529
Upstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978
Downstream geneDgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149M05.bB6Ng01-149M05.g
ACCDH946015DH946016
length1,1871,069
definitionDH946015|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M05, 5' end.DH946016|Mus musculus domesticus DNA, BAC clone: B6Ng01-149M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,053,931 - 106,055,113)(106,256,511 - 106,257,582)
sequence
gaattccatgcctggaaggccgggctggagcactataccaccctccagag
agcctggctcagagttacagggaaggggacacacacacatctgcagttac
ttttgtcaacacaggtatggttattattttgcattaaactttgattcttt
gaccacatttgggcactggagtcaatatcaagatttgacattctgagcta
agacttggttaagaggggatctttgtaaaggaagatgtctaaaatctgtc
attctgagggtcatatgggacagaaataaatgccagagagcaaccagaga
tgtcattttttcattatccccagggtccgtcttcacggcacaagagagaa
tgaagctgatactagacttcccacctcgaacctcatcctcacagcaaact
gctaaggattaactgcagaggtcaacatgaggaaatcaagtttcagagag
gccggacttcaagcccacacattatacaagaacatctgggctcagaagcc
agagcgacttctcagagactggccactgccagctaccaccttctcaggct
gattcccacttacaagatttgctaagtcaccacccacgctccaggacaca
agcctcgggatccctgaatggcgcgagcacagactttccacttcctcaag
tcatgtgattcacttaatgctaaggctgtaatcagcagcccgcctgcacg
ggacagctcgtggtgaccaaacatgaggtacattttagtagcaaccctgg
ggctcagactctaactctggctgctggtcctggggctcccgttctttgct
tgttcttctaggagtcagaccggcctcacctgcctcagtagcacactcta
gggctccattagtacttgcctctcacccagagggtgctctgctgccttag
ccagagcagaggttacgtacacgttgagatggctgccttttatctctttg
gctatctccccggcagcagaaagccgagcaggcaggcacagagcaatgtt
gggggtctggcaagcttggcaaggcgtgttaccacacccggtgctgtggg
atgcaaggcaagcagatactcaccaccttgaacattcagtcgtgctccat
gaagttttccaggtatggaaagagttggcctcagtctggagtcccaggcc
atgcctgggtatccctaccgtcaccaaagaacggaat
gaattccttggtaagtttgtttcccaacaggtacatgtgacaccgcgtat
atccctgattcttaagatgtgagtggtttgcgttgaggtctggttctttg
gttatgtgtggttcatgcacagatctgttaatgttcagttgtttctgatt
ttttaaattgttgtaaactttaattttgcatcattttcatttataaaaaa
tttaatgatttttgattctgtatttatttgggtaaaattcataaaagtag
tttgtacaggcctctgtatacaggactaatttctgggtgataacagcctt
gctcagttagctggccgtgtctagctgggcatgggtacatacctgtaata
ctagggtttgggaggaaatagccaggagggttgtgagcctcagctacaca
gtgagaccctggcaccaagaaaccaaaaccaaaacaacgagctaccgagc
atcccacgtctctccatctggaaagggtcgttgtggaattgtgtgtatgt
gtgaggatgcacaacggtgctgctgggcagtttccctgattctgagtttt
gtgtgaatgaagtaatgcagtaagcccctggtgactggcgcccacctgtg
tgttggcttggttgtcaggatcagctggccctgtgtgctgtgtttgattt
gtttgtgtgtattctactgagtgaatataataggtgatcattttttcccc
tgttggtgagcatgtttgacttctggttcgagccagcgtgcatcctgctg
ctgtaaatactgccctgggtgtctgctggcgcatgcatgcttttctctgc
agcctgtagtcttcagtcctgtggatacacacccgatcagccagggcttc
tggctggttccacaccattgctattcatttctactcactgcattgctggg
agattctgatatattattatgaacacttgatgtttttaaaatttagggag
ctggagagatggctcagtggttaagaaccactgactgctccttttcgagg
tctgaagtccatttcctagcagcacaatggtggctcccaaccacctgtaa
tggaacccatgccctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_106053931_106055113
seq2: B6Ng01-149M05.b_43_1229

seq1  GAATTCCATGCCTGGAAGGCCGGGCTGGAGCACTATACCACCCTCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTGGAAGGCCGGGCTGGAGCACTATACCACCCTCCAGAG  50

seq1  AGCCTGGCTCAGAGTTACAGGGAAGGGGACACACACACATCTGCAGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCTCAGAGTTACAGGGAAGGGGACACACACACATCTGCAGTTAC  100

seq1  TTTTGTCAACACAGGTATGGTTATTATTTTGCATTAAACTTTGATTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAACACAGGTATGGTTATTATTTTGCATTAAACTTTGATTCTTT  150

seq1  GACCACATTTGGGCACTGGAGTCAATATCAAGATTTGACATTCTGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATTTGGGCACTGGAGTCAATATCAAGATTTGACATTCTGAGCTA  200

seq1  AGACTTGGTTAAGAGGGGATCTTTGTAAAGGAAGATGTCTAAAATCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGTTAAGAGGGGATCTTTGTAAAGGAAGATGTCTAAAATCTGTC  250

seq1  ATTCTGAGGGTCATATGGGACAGAAATAAATGCCAGAGAGCAACCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGGTCATATGGGACAGAAATAAATGCCAGAGAGCAACCAGAGA  300

seq1  TGTCATTTTTTCATTATCCCCAGGGTCCGTCTTCACGGCACAAGAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTTTCATTATCCCCAGGGTCCGTCTTCACGGCACAAGAGAGAA  350

seq1  TGAAGCTGATACTAGACTTCCCACCTCGAACCTCATCCTCACAGCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGATACTAGACTTCCCACCTCGAACCTCATCCTCACAGCAAACT  400

seq1  GCTAAGGATTAACTGCAGAGGTCAACATGAGGAAATCAAGTTTCAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGATTAACTGCAGAGGTCAACATGAGGAAATCAAGTTTCAGAGAG  450

seq1  GCCGGACTTCAAGCCCACACATTATACAAGAACATCTGGGCTCAGAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGACTTCAAGCCCACACATTATACAAGAACATCTGGGCTCAGAAGCC  500

seq1  AGAGCGACTTCTCAGAGACTGGCCACTGCCAGCTACCACCTTCTCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGACTTCTCAGAGACTGGCCACTGCCAGCTACCACCTTCTCAGGCT  550

seq1  GATTCCCACTTACAAGATTTGCTAAGTCACCACCCACGCTCCAGGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCACTTACAAGATTTGCTAAGTCACCACCCACGCTCCAGGACACA  600

seq1  AGCCTCGGGATCCCTGAATGGCGCGAGCACAGACTTTCCACTTCCTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGGGATCCCTGAATGGCGCGAGCACAGACTTTCCACTTCCTCAAG  650

seq1  TCATGTGATTCACTTAATGCTAAGGCTGTAATCAGCAGCCCGCCTGCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATTCACTTAATGCTAAGGCTGTAATCAGCAGCCCGCCTGCACG  700

seq1  GGACAGCTCGTGGTGACCAAACATGAGGTACATTTTAGTAGCAACCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTCGTGGTGACCAAACATGAGGTACATTTTAGTAGCAACCCTGG  750

seq1  GGCTCAGACTCTAACTCTGGCTGCTGGTCCTGGGGCTCCCGTTCTTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGACTCTAACTCTGGCTGCTGGTCCTGGGGCTCCCGTTCTTTGCT  800

seq1  TGTTCTTCTAGGAGTCAGACCGGCCTCACCTGCCTCAGTAGCACACTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCTAGGAGTCAGACCGGCCTCACCTGCCTCAGTAGCACACTCTA  850

seq1  GGGCTCCATTAGTACTTGCCTCTCACCCAGAGGGTGCTCTGCTGCCTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCATTAGTACTTGCCTCTCACCCAGAGGGTGCTCTGCTGCCTTAG  900

seq1  CCAGAGCAGAGGTTACGTTACACGTTGAGATGGCTGCCTTTTTATCTCTT  950
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CCAGAGCAGAGGTTACG-TACACGTTGAGATGGCTGCC-TTTTATCTCTT  948

seq1  TGGCTATCT-CACGGCAGCAGAAAGCCGAGCAGGCAGGCACAGAGCAATG  999
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCTCCCCGGCAGCAGAAAGCCGAGCAGGCAGGCACAGAGCAATG  998

seq1  -TGGGGGTCCGGCAAGCTTGGC-AGGCGTGTTACCCACACCC-GTGCTGT  1046
       |||||||| |||||||||||| |||||||||| |||||||| |||||||
seq2  TTGGGGGTCTGGCAAGCTTGGCAAGGCGTGTTA-CCACACCCGGTGCTGT  1047

seq1  GGGA-GTCAGGCAAGCAGATACTCACCACC-TGACCA-TCAGTCCGTGCT  1093
      |||| |  |||||||||||||||||||||| ||| || ||||| ||||||
seq2  GGGATGCAAGGCAAGCAGATACTCACCACCTTGAACATTCAGT-CGTGCT  1096

seq1  CCATGAAGTTTTTCAGGT-TAGGAAGAGTTTGCCTCAAGTCTGGAGTCCC  1142
      |||||||||||| ||||| | | ||||||| ||||| |||||||||| ||
seq2  CCATGAAGTTTTCCAGGTATGGAAAGAGTTGGCCTC-AGTCTGGAGT-CC  1144

seq1  CAGGCCATGC--TGGTATCTCAGCTGCAACGAAAGAACGGAAT  1183
      ||||||||||   |||||| |  | |  || ||||||||||||
seq2  CAGGCCATGCCTGGGTATCCCTACCGTCACCAAAGAACGGAAT  1187

seq1: chr7_106256511_106257582
seq2: B6Ng01-149M05.g_67_1135 (reverse)

seq1  GAAGAGGGCATTGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGCT  50
      |||||||||| ||| | ||||||||| |||||| ||||||||||   |||
seq2  GAAGAGGGCA-TGGGTTCCATTACAGGTGGTTGGGAGCCACCATTGTGCT  49

seq1  GCTAGGAATTGAACTCAGGACCTCGAAAA-GAGCAGTCAGT-GCTCTTAA  98
      |||||||| || |||   ||||||||||| ||||||||||| | ||||||
seq2  GCTAGGAAATGGACTTCAGACCTCGAAAAGGAGCAGTCAGTGGTTCTTAA  99

seq1  CCACTGAGCCATCTCTCCAGCTCCCTAAATTTTTAAAAACATCAAGTGTT  148
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCACTGAGCCATCTCTCCAGCTCCCTAAA-TTTTAAAAACATCAAGTGTT  148

seq1  CATAATAATATAATCAGAATTCTCCCAGCAATGCAGTGAGTAGAAATGAA  198
      ||||||||||| ||||||| |||||||||||||||||||||||||||| |
seq2  CATAATAATAT-ATCAGAA-TCTCCCAGCAATGCAGTGAGTAGAAATG-A  195

seq1  ATAGCAATGGTGTGGAACCAGCCAGAAGCCCTGGCTGATCGGGTGTGTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATGGTGTGGAACCAGCCAGAAGCCCTGGCTGATCGGGTGTGTAT  245

seq1  CCACAGGACTGAAGACTACAGGCTGCAGAGAAAAGCATGCATGCGCCAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGACTGAAGACTACAGGCTGCAGAGAAAAGCATGCATGCGCCAGC  295

seq1  AGACACCCAGGGCAGTATTTACAGCAGCAGGATGCACGCTGGCTCGAACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCAGGGCAGTATTTACAGCAGCAGGATGCACGCTGGCTCGAACC  345

seq1  AGAAGTCAAACATGCTCACCAACAGGGGAAAAAATGATCACCTATTATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCAAACATGCTCACCAACAGGGGAAAAAATGATCACCTATTATAT  395

seq1  TCACTCAGTAGAATACACACAAACAAATCAAACACAGCACACAGGGCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGTAGAATACACACAAACAAATCAAACACAGCACACAGGGCCAG  445

seq1  CTGATCCTGACAACCAAGCCAACACACAGGTGGGCGCCAGTCACCAGGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTGACAACCAAGCCAACACACAGGTGGGCGCCAGTCACCAGGGG  495

seq1  CTTACTGCATTACTTCATTCACACAAAACTCAGAATCAGGGAAACTGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCATTACTTCATTCACACAAAACTCAGAATCAGGGAAACTGCCC  545

seq1  AGCAGCACCGTTGTGCATCCTCACACATACACACAATTCCACAACGACCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACCGTTGTGCATCCTCACACATACACACAATTCCACAACGACCC  595

seq1  TTTCCAGATGGAGAGACGTGGGATGCTCGGTAGCTCGTTGTTTTGGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATGGAGAGACGTGGGATGCTCGGTAGCTCGTTGTTTTGGTTTT  645

seq1  GGTTTCTTGGTGCCAGGGTCTCACTGTGTAGCTGAGGCTCACAACCCTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTGGTGCCAGGGTCTCACTGTGTAGCTGAGGCTCACAACCCTCC  695

seq1  TGGCTATTTCCTCCCAAACCCTAGTATTACAGGTATGTACCCATGCCCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTTCCTCCCAAACCCTAGTATTACAGGTATGTACCCATGCCCAG  745

seq1  CTAGACACGGCCAGCTAACTGAGCAAGGCTGTTATCACCCAGAAATTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACGGCCAGCTAACTGAGCAAGGCTGTTATCACCCAGAAATTAGT  795

seq1  CCTGTATACAGAGGCCTGTACAAACTACTTTTATGAATTTTACCCAAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATACAGAGGCCTGTACAAACTACTTTTATGAATTTTACCCAAATA  845

seq1  AATACAGAATCAAAAATCATTAAATTTTTTATAAATGAAAATGATGCAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAATCAAAAATCATTAAATTTTTTATAAATGAAAATGATGCAAA  895

seq1  ATTAAAGTTTACAACAATTTAAAAAATCAGAAACAACTGAACATTAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTTTACAACAATTTAAAAAATCAGAAACAACTGAACATTAACAG  945

seq1  ATCTGTGCATGAACCACACATAACCAAAGAACCAGACCTCAACGCAAACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCATGAACCACACATAACCAAAGAACCAGACCTCAACGCAAACC  995

seq1  ACTCACATCTTAAGAATCAGGGATATACGCGGTGTCACATGTACCTGTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATCTTAAGAATCAGGGATATACGCGGTGTCACATGTACCTGTTG  1045

seq1  GGAAACAAACTTACCAAGGAATTC  1072
      ||||||||||||||||||||||||
seq2  GGAAACAAACTTACCAAGGAATTC  1069