BAC Information

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BAC

Clone NameB6Ng01-150A13
Chromosome7 (Build37)
Map Location 52,417,097 - 52,600,621
singlet/doubletdoublet
Overlap geneSlc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik
Upstream geneKlk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1
Downstream geneMtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150A13.bB6Ng01-150A13.g
ACCDH946216DH946217
length1,066550
definitionDH946216|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A13, 5' end.DH946217|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,417,097 - 52,418,165)(52,600,066 - 52,600,621)
sequence
gaattccaggacaggtaggactatgtagacaagacactgcttaaaaaaat
aaaaaattaaaaaataatccaaagttgagaacattgccatacaacttctg
agaaaagttggtaaagtcagaaggatgaccgttcagaagccagacatggt
gggtatgcctgcaataacattctctggaggcggaggcagtaggataagtt
ccacacaaagtctgtacaaccgccagacttgtgtatcctgctccaggatg
cgagcaagcaaactggagacccctgtccacgtgagggcgccaggaagctt
tagactctaaggcttcttagctaaaattgtatctcctagaacgggctaat
agaaacgtgcagtggtgaggagaacgagcctaacttccaagcgcaaaggc
cactggggcttgtagtccagactgagggcctccctgggcaacctaaggtc
tagtttctaggtcctaaaaaagctcgaagattgggtgcgttcttcctttc
tccgtcgccatggtgatggtgcgggcgacggcccgggatttggcagccgc
agggcccccttcccacaccctcctcctcaccatctgctcctccctcacac
ctggccgcgagccgcggacgccacctccgcacgcagtccgggactccatg
gccaccaggtggcgcgtctgcgcggctcagcctgctgccctcctccccgg
ggacttgtcaatcagagacagagctgagacccaccatccccgcccgccac
tcgatcggcttcgctggtcccctcctgggccgggtcatgaaaatttaatc
ccaaatgcatttgtagcctgacacggggagagagacggtgggaacaccaa
caccctgctaaggcatagaacttgggatgcactgggagaagcattggcgt
ggagtgcttcaggccattttagagttggggttacccccaagggatgggag
tggaatttacgggtggaaagaggacttagtgggtgggggacagatcgtgg
agcccgatggaagtcactgctgggaccacacatggaagaaggatctaact
caggggaggagcaggc
cagacaatggcaatgctgagtgagcccatacatagtctccttactttgag
acagtctctccctatgtagctctgacttgtcttgctcttgcagccctgcc
tctgcctccctagtgctgggattaaggcctgccccaccatgctaggctcc
cagggttacatatgttcactgtgtgctccggcacggtttccagcactcat
caggagccgaatggtctcactctatacagattttcatgatccgtaggcca
ggtatcggcaggggtcacccggcacagggtggcaaacctcttcctgatgg
cacactccctccctttgctgcatctgctatcaccttcttggtcctcactg
tgcatgacaccagagaggtggcattaaagacccccccaaaaaaagaaccc
aaattcctctttagaattttatgtgtatgaatgttttacctgcatggatg
agtaggagaatgcctggtgcccctggaggtcagaagagaagaggccatta
gatcctctggcagtgaagattcagatggctgtgaactgtcgtgtgtgtgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52417097_52418165
seq2: B6Ng01-150A13.b_45_1110

seq1  GAATTCCAGGACAGGTAGGACTATGTAGACAAGACACTGCTTAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGTAGGACTATGTAGACAAGACACTGCTTAAAAAAAT  50

seq1  AAAAAATTAAAAAATAATCCAAAGTTGAGAACATTGCCATACAACTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAAAATAATCCAAAGTTGAGAACATTGCCATACAACTTCTG  100

seq1  AGAAAAGTTGGTAAAGTCAGAAGGATGACCGTTCAGAAGCCAGACATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTGGTAAAGTCAGAAGGATGACCGTTCAGAAGCCAGACATGGT  150

seq1  GGGTATGCCTGCAATAACATTCTCTGGAGGCGGAGGCAGTAGGATAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGCCTGCAATAACATTCTCTGGAGGCGGAGGCAGTAGGATAAGTT  200

seq1  CCACACAAAGTCTGTACAACCGCCAGACTTGTGTATCCTGCTCCAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAAGTCTGTACAACCGCCAGACTTGTGTATCCTGCTCCAGGATG  250

seq1  CGAGCAAGCAAACTGGAGACCCCTGTCCACGTGAGGGCGCCAGGAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAAGCAAACTGGAGACCCCTGTCCACGTGAGGGCGCCAGGAAGCTT  300

seq1  TAGACTCTAAGGCTTCTTAGCTAAAATTGTATCTCCTAGAACGGGCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTAAGGCTTCTTAGCTAAAATTGTATCTCCTAGAACGGGCTAAT  350

seq1  AGAAACGTGCAGTGGTGAGGAGAACGAGCCTAACTTCCAAGCGCAAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGTGCAGTGGTGAGGAGAACGAGCCTAACTTCCAAGCGCAAAGGC  400

seq1  CACTGGGGCTTGTAGTCCAGACTGAGGGCCTCCCTGGGCAACCTAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGCTTGTAGTCCAGACTGAGGGCCTCCCTGGGCAACCTAAGGTC  450

seq1  TAGTTTCTAGGTCCTAAAAAAGCTCGAAGATTGGGTGCGTTCTTCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTAGGTCCTAAAAAAGCTCGAAGATTGGGTGCGTTCTTCCTTTC  500

seq1  TCCGTCGCCATGGTGATGGTGCGGGCGACGGCCCGGGATTTGGCAGCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCGCCATGGTGATGGTGCGGGCGACGGCCCGGGATTTGGCAGCCGC  550

seq1  AGGGCCCCCTTCCCACACCCTCCTCCTCACCATCTGCTCCTCCCTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCCCTTCCCACACCCTCCTCCTCACCATCTGCTCCTCCCTCACAC  600

seq1  CTGGCCGCGAGCCGCGGACGCCACCTCCGCACGCAGTCCGGGACTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCGCGAGCCGCGGACGCCACCTCCGCACGCAGTCCGGGACTCCATG  650

seq1  GCCACCAGGTGGCGCGTCTGCGCGGCTCAGCCTGCTGCCCTCCTCCCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAGGTGGCGCGTCTGCGCGGCTCAGCCTGCTGCCCTCCTCCCCGG  700

seq1  GGACTTGTCAATCAGAGACAGAGCTGAGACCCACCATCCCCGCCCGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTCAATCAGAGACAGAGCTGAGACCCACCATCCCCGCCCGCCAC  750

seq1  TCGATCGGCTTCGCTGGTCCCCTCCTGGGCCGGGTCATGAAAATTTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCGGCTTCGCTGGTCCCCTCCTGGGCCGGGTCATGAAAATTTAATC  800

seq1  CCAAATGCATTTGTAGCCTGACACGGGGAGAGAGACGGTGGGAACACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCATTTGTAGCCTGACACGGGGAGAGAGACGGTGGGAACACCAA  850

seq1  CACCCTGCTAAGGCATAGAACTTGGGATGCACTGGGAGAAGCATTGGCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGCTAAGGCATAGAACTTGGGATGCACTGGGAGAAGCATTGGCGT  900

seq1  GGAGTGCTTCAGGGCCATTTTAGAGTTGGGGTTACCCCCAAGGGATGGGA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCTTCA-GGCCATTTTAGAGTTGGGGTTACCCCCAAGGGATGGGA  949

seq1  GTGGAATTTACGGGTGGAAAGAGGACTTAGTGGGT-GGGGACAGATCGTG  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGAATTTACGGGTGGAAAGAGGACTTAGTGGGTGGGGGACAGATCGTG  999

seq1  GAGCCCGAGTGGAAGTCACTGCTGGGA-CACACATGGAGGAAGGAGTCAG  1048
      |||||||| |||||||||||||||||| |||||||||| |||||| ||  
seq2  GAGCCCGA-TGGAAGTCACTGCTGGGACCACACATGGAAGAAGGA-TCTA  1047

seq1  ACTCAAGGGGAGGAGCCAGGC  1069
      |||| |||||||||| |||||
seq2  ACTC-AGGGGAGGAG-CAGGC  1066

seq1: chr7_52600066_52600621
seq2: B6Ng01-150A13.g_69_624 (reverse)

seq1  ACACACACACGACAGTTCACAGCCATCTGAATCTTCACTGCCAGAGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGACAGTTCACAGCCATCTGAATCTTCACTGCCAGAGGATC  50

seq1  TAATGGCCTCTTCTCTTCTGACCTCCAGGGGCACCAGGCATTCTCCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCCTCTTCTCTTCTGACCTCCAGGGGCACCAGGCATTCTCCTACT  100

seq1  CATCCATGCAGGTAAAACATTCATACACATAAAATTCTAAAGAGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGCAGGTAAAACATTCATACACATAAAATTCTAAAGAGGAATTT  150

seq1  GGGTTCTTTTTTTGGGGGGGTCTTTAATGCCACCTCTCTGGTGTCATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTTTTTTGGGGGGGTCTTTAATGCCACCTCTCTGGTGTCATGCA  200

seq1  CAGTGAGGACCAAGAAGGTGATAGCAGATGCAGCAAAGGGAGGGAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGACCAAGAAGGTGATAGCAGATGCAGCAAAGGGAGGGAGTGTG  250

seq1  CCATCAGGAAGAGGTTTGCCACCCTGTGCCGGGTGACCCCTGCCGATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGAAGAGGTTTGCCACCCTGTGCCGGGTGACCCCTGCCGATACC  300

seq1  TGGCCTACGGATCATGAAAATCTGTATAGAGTGAGACCATTCGGCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACGGATCATGAAAATCTGTATAGAGTGAGACCATTCGGCTCCTG  350

seq1  ATGAGTGCTGGAAACCGTGCCGGAGCACACAGTGAACATATGTAACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGCTGGAAACCGTGCCGGAGCACACAGTGAACATATGTAACCCTG  400

seq1  GGAGCCTAGCATGGTGGGGCAGGCCTTAATCCCAGCACTAGGGAGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGCATGGTGGGGCAGGCCTTAATCCCAGCACTAGGGAGGCAGA  450

seq1  GGCAGGGCTGCAAGAGCAAGACAAGTCAGAGCTACATAGGGAGAGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCTGCAAGAGCAAGACAAGTCAGAGCTACATAGGGAGAGACTGT  500

seq1  CTCAAAGTAAGGAGACTATGTATGGGCTCACTCAGCATTGCCATTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTAAGGAGACTATGTATGGGCTCACTCAGCATTGCCATTGTCTG  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556