BAC Information

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BAC

Clone NameB6Ng01-150C10
Chromosome11 (Build37)7 (Build37)
Map Location 101,838,643 - 101,838,828121,773,332 - 121,773,824
singlet/doubletsingletsinglet
Overlap geneDusp3
Upstream geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost
Downstream gene1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150C10.bB6Ng01-150C10.g
ACCDH946305DH946306
length823487
definitionDH946305|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C10, 5' end.DH946306|Mus musculus domesticus DNA, BAC clone: B6Ng01-150C10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,838,643 - 101,838,828)(121,773,332 - 121,773,824)
sequence
gaattcatctaagttgccctcctgtgtctatgtgtgggtttatctcccaa
cctgcacaagtgctgagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtctgtgtatgtttgtatgtgtgtgtctttaccagtctccagtctcatg
tcacatgaactttatttaaaataaaggaggtggagcttgagcatgggctc
agtgactcagttccaaagaaaatactagagaaggaaagagacaagtgatt
ctgtggtgaagactgacaccatatgacctggtgaccatggtcagcaacat
gaatgttagatcctgttgatagcccacatcctgtatgttaaggggaacac
atcagcactgtgggattctttctttaaaatacatgacttaatctcatgat
gaaaaagaatcagacaaatactaattatgggtttgtgctgcctagtttta
tgtcatcttgacacagctaaagtgcttttagaacagaggcactcagttga
gaaaacgctccccttagattggaatttggggaacctgtggtgcattttct
tgattgctggtgtggtagagctcagcccactgtgggtggtactacttcag
ggtaggtggtccagagggtaaaaaacaaaacaacatctgaacaagcaatg
aggaacaagccagtaagcaaccctcctctatggcctctgcttcagctcct
gccttccgattcctgtgtcaagttttctctggactctctttaatgatgca
atatgaaagtgtgagctaaagaaatctttttctcccaaattgcttttttt
ttccccaagacagggtttctctg
attatccaagagataactggggatatctcgggcaattaagattgaggaaa
accagacagaagaaagccgagacttgaccacaagcataaatggcaagatt
taactacatcactcactcaccagttcaatagctattagttgagtgctgtc
ttgctccagacacactagtttgtatcttgcataagagcaattaataaaat
ggacatattgctaaacgaccttggtttatggtgagtggcacaaacaataa
acaaagtaagaaaaaatacggtatggtaaaagttaaaagtggtaaggaga
acaccaataaaatagatgtgcaaagaggcatagggtgcaatttcagaaag
atgacccaagtaacatttgaatgaagttaagaagggggccactgggtaag
tgttctgcacagagtgacactagccattgtgtacttacagtggtgaatgc
tgcgatataggagtttagaaatactcaagccagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101838643_101838828
seq2: B6Ng01-150C10.b_116_284 (reverse)

seq1  TTTCCTTCTCTGGTATCCCTCCTCT---CCTCTCTCCCTGCATCCCACAC  47
      ||||||||||| ||||   | || |    ||   || ||| | ||||   
seq2  TTTCCTTCTCTAGTAT--TTTCTTTGGAACTGAGTCACTG-AGCCCA---  44

seq1  TGCCTCAGCCTACAGCTTATTCCTTCCTGCCCACCTTCCTGCAGACTATG  97
      || ||||  || || ||  ||  ||       |  ||| ||  ||| |||
seq2  TG-CTCAAGCTCCACCTCCTTTATTTTAAATAAAGTTCATG-TGAC-ATG  91

seq1  AGCCATTCCCACT-GACACACATACACACAAACACACACACACACATACA  146
      ||        ||| || ||   || | ||  ||||||| ||| |||||||
seq2  AG--------ACTGGAGACTGGTAAAGAC--ACACACATACAAACATACA  131

seq1  CACAAACACACACACACACACACACACACACACACACACA  186
      || | |||||||||||||||||||||||||||||||||  
seq2  CAGACACACACACACACACACACACACACACACACACA--  169

seq1: chr7_121773332_121773824
seq2: B6Ng01-150C10.g_66_558

seq1  GAATTCATTATCCAAGAGATAACTGGGGATATCTCGGGCAATTAAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCCAAGAGATAACTGGGGATATCTCGGGCAATTAAGATTG  50

seq1  AGGAAAACCAGACAGAAGAAAGCCGAGACTTGACCACAAGCATAAATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACCAGACAGAAGAAAGCCGAGACTTGACCACAAGCATAAATGGC  100

seq1  AAGATTTAACTACATCACTCACTCACCAGTTCAATAGCTATTAGTTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAACTACATCACTCACTCACCAGTTCAATAGCTATTAGTTGAGT  150

seq1  GCTGTCTTGCTCCAGACACACTAGTTTGTATCTTGCATAAGAGCAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGCTCCAGACACACTAGTTTGTATCTTGCATAAGAGCAATTAA  200

seq1  TAAAATGGACATATTGCTAAACGACCTTGGTTTATGGTGAGTGGCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGACATATTGCTAAACGACCTTGGTTTATGGTGAGTGGCACAAA  250

seq1  CAATAAACAAAGTAAGAAAAAATACGGTATGGTAAAAGTTAAAAGTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACAAAGTAAGAAAAAATACGGTATGGTAAAAGTTAAAAGTGGTA  300

seq1  AGGAGAACACCAATAAAATAGATGTGCAAAGAGGCATAGGGTGCAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACACCAATAAAATAGATGTGCAAAGAGGCATAGGGTGCAATTTC  350

seq1  AGAAAGATGACCCAAGTAACATTTGAATGAAGTTAAGAAGGGGGCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGACCCAAGTAACATTTGAATGAAGTTAAGAAGGGGGCCACTG  400

seq1  GGTAAGTGTTCTGCACAGAGTGACACTAGCCATTGTGTACTTACAGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGTTCTGCACAGAGTGACACTAGCCATTGTGTACTTACAGTGGT  450

seq1  GAATGCTGCGATATAGGAGTTGAGAAATACTCAAGCCAGTGTG  493
      ||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATGCTGCGATATAGGAGTTTAGAAATACTCAAGCCAGTGTG  493